Wall clock time and date at job start Tue Mar 31 2020 05:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37100 * 120.00040 * 2 1 4 4 H 1.07991 * 120.00171 * 184.94144 * 3 2 1 5 5 C 1.38952 * 119.99745 * 4.94945 * 3 2 1 6 6 N 1.31409 * 120.00368 * 5.59531 * 5 3 2 7 7 Si 1.86806 * 119.99957 * 185.60602 * 5 3 2 8 8 H 1.48505 * 109.46918 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47250 * 119.99446 * 7 5 3 10 10 H 1.48498 * 109.46796 * 239.99601 * 7 5 3 11 11 C 1.34778 * 120.00129 * 180.02562 * 2 1 3 12 12 O 1.21293 * 119.99978 * 5.26072 * 11 2 1 13 13 C 1.50695 * 119.99850 * 185.26943 * 11 2 1 14 14 C 1.52998 * 109.46029 * 53.64087 * 13 11 2 15 15 C 1.52998 * 109.46155 * 173.61895 * 13 11 2 16 16 C 1.53025 * 109.46441 * 180.15206 * 15 13 11 17 17 C 1.52961 * 109.43701 * 300.20585 * 16 15 13 18 18 C 1.52982 * 109.80467 * 59.69682 * 17 16 15 19 19 C 1.52996 * 109.46088 * 293.66507 * 13 11 2 20 20 O 1.43710 * 109.40846 * 299.61511 * 17 16 15 21 21 C 1.44801 * 104.78897 * 215.86415 * 20 17 16 22 22 C 1.54918 * 101.72510 * 36.05915 * 21 20 17 23 23 O 1.43292 * 109.67262 * 180.27397 * 17 16 15 24 24 H 1.08997 * 109.47248 * 174.74813 * 1 2 3 25 25 H 1.09005 * 109.47400 * 294.74575 * 1 2 3 26 26 H 1.08999 * 109.47578 * 54.74611 * 1 2 3 27 27 H 0.96998 * 120.00019 * 180.02562 * 6 5 3 28 28 H 1.08998 * 109.46990 * 185.39463 * 14 13 11 29 29 H 1.08998 * 109.47006 * 305.38997 * 14 13 11 30 30 H 1.09000 * 109.46749 * 65.38907 * 14 13 11 31 31 H 1.09007 * 109.47096 * 60.15775 * 15 13 11 32 32 H 1.08994 * 109.47446 * 300.14939 * 15 13 11 33 33 H 1.08992 * 109.47878 * 60.19508 * 16 15 13 34 34 H 1.08998 * 109.47804 * 180.21722 * 16 15 13 35 35 H 1.09006 * 109.46905 * 180.31475 * 18 17 16 36 36 H 1.09004 * 109.48003 * 60.30163 * 18 17 16 37 37 H 1.09001 * 109.47321 * 299.84611 * 19 13 11 38 38 H 1.08992 * 109.47173 * 59.84772 * 19 13 11 39 39 H 1.09004 * 110.97364 * 277.95191 * 21 20 17 40 40 H 1.08992 * 111.00751 * 154.18386 * 21 20 17 41 41 H 1.09000 * 110.68941 * 206.07713 * 22 21 20 42 42 H 1.08998 * 110.83846 * 82.94672 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.2273 1.1891 -0.0806 5 6 1.4595 2.3884 0.1038 6 7 0.1621 2.3842 0.3123 7 14 2.3750 4.0092 -0.0533 8 1 3.8177 3.7425 -0.2831 9 1 1.8252 4.7794 -1.1977 10 1 2.2100 4.7939 1.1965 11 6 2.1389 -1.1672 -0.0005 12 8 1.5362 -2.2154 -0.0973 13 6 3.6410 -1.1699 0.1193 14 6 4.0551 -0.3704 1.3563 15 6 4.1391 -2.6104 0.2531 16 6 5.6642 -2.6130 0.3786 17 6 6.2784 -1.9695 -0.8657 18 6 5.7783 -0.5305 -1.0057 19 6 4.2531 -0.5312 -1.1289 20 8 5.8986 -2.7222 -2.0295 21 6 7.0565 -2.6702 -2.8975 22 6 8.2191 -2.7272 -1.8753 23 8 7.7072 -1.9751 -0.7563 24 1 -0.3633 -1.0233 -0.0941 25 1 -0.3634 0.4302 0.9333 26 1 -0.3634 0.5931 -0.8392 27 1 -0.3202 3.2227 0.3844 28 1 5.1417 -0.2911 1.3907 29 1 3.6194 0.6274 1.3066 30 1 3.6993 -0.8780 2.2529 31 1 3.8462 -3.1795 -0.6293 32 1 3.7007 -3.0655 1.1411 33 1 5.9571 -2.0468 1.2627 34 1 6.0196 -3.6393 0.4700 35 1 6.2148 -0.0792 -1.8967 36 1 6.0717 0.0434 -0.1266 37 1 3.9601 -1.1020 -2.0101 38 1 3.8959 0.4940 -1.2248 39 1 7.0790 -1.7382 -3.4625 40 1 7.0824 -3.5303 -3.5664 41 1 9.1127 -2.2533 -2.2815 42 1 8.4291 -3.7563 -1.5839 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931239583.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:00 Heat of formation + Delta-G solvation = -103.109083 kcal Electronic energy + Delta-G solvation = -24648.999494 eV Core-core repulsion = 21209.142477 eV Total energy + Delta-G solvation = -3439.857017 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.91065 -39.19041 -36.35359 -34.88023 -34.82242 -31.65230 -31.05011 -30.50054 -28.55177 -26.21310 -25.94603 -24.53394 -23.28427 -22.37609 -21.66718 -19.39114 -18.23720 -17.44543 -17.03089 -16.42564 -15.77201 -15.39417 -14.82216 -14.43854 -14.23972 -14.12142 -13.63153 -13.52483 -13.14828 -12.95692 -12.68676 -12.59427 -12.30649 -11.93219 -11.73872 -11.54398 -11.44335 -11.28877 -11.03853 -10.97858 -10.81443 -10.76856 -10.46717 -10.32331 -10.21238 -10.15473 -9.89577 -9.53050 -9.05483 -8.94983 -8.13227 -7.83004 -6.26733 -3.85197 3.07701 3.17841 3.20056 3.44625 3.96683 4.04314 4.04987 4.53417 4.78596 4.85371 4.89798 5.00989 5.09418 5.17961 5.31861 5.47885 5.56924 5.64556 5.68681 5.75944 5.81187 5.87746 5.98486 6.11746 6.17288 6.24593 6.38178 6.53278 6.57994 6.64913 6.70655 6.88575 6.97029 7.02224 7.20024 7.24460 7.30985 7.45533 7.54587 7.79139 8.42407 9.08856 9.60747 10.00274 10.66408 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021941 B = 0.006004 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.842598 B = 4662.316699 C = 5363.211753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.445 5.445 3 C -0.335 4.335 4 H 0.123 0.877 5 C 0.031 3.969 6 N -0.874 5.874 7 Si 0.918 3.082 8 H -0.267 1.267 9 H -0.280 1.280 10 H -0.280 1.280 11 C 0.461 3.539 12 O -0.614 6.614 13 C -0.055 4.055 14 C -0.166 4.166 15 C -0.084 4.084 16 C -0.117 4.117 17 C 0.259 3.741 18 C -0.133 4.133 19 C -0.112 4.112 20 O -0.360 6.360 21 C 0.013 3.987 22 C 0.021 3.979 23 O -0.382 6.382 24 H 0.033 0.967 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.265 0.735 28 H 0.050 0.950 29 H 0.102 0.898 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.591 -4.402 -3.278 14.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.162 5.162 3 C -0.463 4.463 4 H 0.140 0.860 5 C -0.173 4.173 6 N -0.514 5.514 7 Si 0.745 3.255 8 H -0.191 1.191 9 H -0.206 1.206 10 H -0.206 1.206 11 C 0.249 3.751 12 O -0.501 6.501 13 C -0.058 4.058 14 C -0.223 4.223 15 C -0.122 4.122 16 C -0.155 4.155 17 C 0.183 3.817 18 C -0.171 4.171 19 C -0.149 4.149 20 O -0.280 6.280 21 C -0.064 4.064 22 C -0.056 4.056 23 O -0.303 6.303 24 H 0.051 0.949 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.120 0.880 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.122 0.878 41 H 0.113 0.887 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.993 -4.725 -3.164 14.183 hybrid contribution 0.481 1.002 -0.244 1.138 sum 13.474 -3.723 -3.408 14.388 Atomic orbital electron populations 1.21501 0.80099 0.97318 1.03147 1.43660 1.06041 1.04724 1.61804 1.20258 0.93485 0.82799 1.49710 0.86038 1.25334 0.95748 0.99653 0.96569 1.70227 1.06964 1.26928 1.47237 0.85988 0.79565 0.81874 0.78103 1.19099 1.20586 1.20609 1.19833 0.88743 0.83557 0.82940 1.90498 1.70110 1.31796 1.57731 1.20337 0.93535 0.95575 0.96378 1.22379 1.00259 1.03764 0.95908 1.21235 0.91876 0.96037 1.03062 1.21893 0.96986 1.00780 0.95859 1.23462 0.78972 0.92288 0.87026 1.22152 0.97587 0.94511 1.02886 1.21738 0.92213 1.03600 0.97397 1.89345 1.35728 1.73985 1.28973 1.24333 0.84430 1.03264 0.94400 1.24127 0.97767 0.97307 0.86391 1.88876 1.20148 1.74279 1.47030 0.94867 0.91405 0.92468 0.92396 0.93120 0.87999 0.93455 0.90906 0.91547 0.89967 0.91513 0.91782 0.89907 0.91638 0.88354 0.90868 0.87754 0.88749 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.14 8.87 59.84 0.53 3.67 16 2 N -0.45 -11.38 3.02 -122.20 -0.37 -11.75 16 3 C -0.34 -8.19 6.78 -14.93 -0.10 -8.29 16 4 H 0.12 2.74 3.03 -52.49 -0.16 2.58 16 5 C 0.03 0.75 5.42 -17.47 -0.09 0.66 16 6 N -0.87 -22.56 9.53 55.50 0.53 -22.04 16 7 Si 0.92 19.02 29.56 -169.99 -5.02 13.99 16 8 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 9 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 10 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 11 C 0.46 11.42 6.46 -10.99 -0.07 11.35 16 12 O -0.61 -16.85 15.33 5.55 0.09 -16.77 16 13 C -0.06 -1.11 0.49 -155.67 -0.08 -1.18 16 14 C -0.17 -3.10 7.38 37.16 0.27 -2.82 16 15 C -0.08 -1.57 3.90 -26.72 -0.10 -1.67 16 16 C -0.12 -1.84 5.06 -26.74 -0.14 -1.97 16 17 C 0.26 3.96 1.03 -26.76 -0.03 3.93 16 18 C -0.13 -2.10 5.00 -26.73 -0.13 -2.24 16 19 C -0.11 -2.09 4.30 -26.73 -0.12 -2.20 16 20 O -0.36 -5.57 9.66 -59.04 -0.57 -6.14 16 21 C 0.01 0.14 7.91 38.17 0.30 0.44 16 22 C 0.02 0.21 8.07 38.17 0.31 0.52 16 23 O -0.38 -5.42 10.87 -59.04 -0.64 -6.06 16 24 H 0.03 0.84 6.91 -51.93 -0.36 0.48 16 25 H 0.07 1.79 6.92 -51.93 -0.36 1.43 16 26 H 0.06 1.49 7.21 -51.93 -0.37 1.12 16 27 H 0.27 6.50 8.31 -40.82 -0.34 6.17 16 28 H 0.05 0.81 4.83 -51.93 -0.25 0.56 16 29 H 0.10 2.08 4.49 -51.93 -0.23 1.85 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.48 7.58 -51.93 -0.39 1.09 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.08 1.22 6.56 -51.93 -0.34 0.88 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 1.27 6.32 -51.93 -0.33 0.94 16 37 H 0.06 1.29 7.69 -51.93 -0.40 0.89 16 38 H 0.10 1.95 4.98 -51.93 -0.26 1.69 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 309.94 15.07 4.67 4.67 Total: -1.00 -29.61 309.94 -6.74 -36.35 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -5.97 Total: 7.56 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 0.56 Total: 0.18 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: 0.16 Total: -33.78 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -1.13 Total: -28.97 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.61 -6.74 -36.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931239583.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.760 kcal (2) G-P(sol) polarization free energy of solvation -29.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds