Wall clock time and date at job start Tue Mar 31 2020 06:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47362 * 2 1 4 4 C 1.53004 * 109.47046 * 240.00292 * 2 1 3 5 5 C 1.50692 * 109.47339 * 60.00140 * 4 2 1 6 6 H 1.08005 * 120.00131 * 0.02562 * 5 4 2 7 7 C 1.37884 * 120.00198 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99406 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00086 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47150 * 59.99545 * 9 7 5 11 11 H 1.48498 * 109.46813 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47138 * 299.99653 * 9 7 5 13 13 C 1.52998 * 109.47284 * 120.00412 * 2 1 3 14 14 N 1.46504 * 109.46651 * 300.00013 * 13 2 1 15 15 C 1.34776 * 119.99952 * 179.97438 * 14 13 2 16 16 O 1.21288 * 120.00155 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00342 * 179.97438 * 15 14 13 18 18 C 1.53000 * 109.47554 * 180.02562 * 17 15 14 19 19 H 1.09005 * 110.74612 * 51.52920 * 18 17 15 20 20 C 1.54262 * 110.84598 * 287.84261 * 18 17 15 21 21 O 1.45370 * 106.62999 * 226.61517 * 20 18 17 22 22 C 1.34251 * 111.58121 * 357.88425 * 21 20 18 23 23 O 1.20825 * 125.82859 * 199.57532 * 22 21 20 24 24 C 1.51664 * 108.47383 * 19.38468 * 22 21 20 25 25 H 1.09003 * 109.47325 * 300.00309 * 1 2 3 26 26 H 1.09007 * 109.46974 * 59.99849 * 1 2 3 27 27 H 1.08996 * 109.47720 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47008 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.46991 * 300.00001 * 3 2 1 30 30 H 1.08998 * 109.46930 * 59.99989 * 3 2 1 31 31 H 1.08998 * 109.47142 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.46724 * 300.00061 * 4 2 1 33 33 H 0.97003 * 119.99569 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47542 * 179.97438 * 13 2 1 35 35 H 1.09004 * 109.47288 * 59.99448 * 13 2 1 36 36 H 0.97002 * 120.00181 * 359.97438 * 14 13 2 37 37 H 1.08998 * 109.47009 * 59.99840 * 17 15 14 38 38 H 1.09004 * 109.46797 * 300.00190 * 17 15 14 39 39 H 1.09000 * 110.02485 * 345.90355 * 20 18 17 40 40 H 1.09001 * 110.02665 * 107.32200 * 20 18 17 41 41 H 1.09002 * 110.70856 * 213.24956 * 24 22 21 42 42 H 1.08995 * 110.70636 * 90.18454 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8703 -0.4821 -3.7321 8 7 2.6264 -1.5514 -3.8526 9 14 1.2483 0.3990 -5.2572 10 1 1.7443 1.7987 -5.2572 11 1 1.7432 -0.3011 -6.4697 12 1 -0.2368 0.4001 -5.2572 13 6 2.0400 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8767 -0.4915 3.6695 16 8 2.5740 -1.4776 3.7808 17 6 1.3749 0.2192 4.8999 18 6 1.8848 -0.5021 6.1492 19 1 2.9640 -0.6466 6.0982 20 6 1.1550 -1.8474 6.3426 21 8 0.7645 -1.9115 7.7414 22 6 1.1877 -0.8345 8.4221 23 8 1.3093 -0.7590 9.6219 24 6 1.4927 0.2716 7.4303 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1299 -0.7216 -1.2491 32 1 1.6765 -1.7489 -1.2493 33 1 2.8607 -1.8828 -4.7337 34 1 3.1299 -0.7217 1.2490 35 1 1.6766 -1.7490 1.2492 36 1 0.9942 0.7582 2.3564 37 1 0.2849 0.2200 4.8999 38 1 1.7390 1.2466 4.9000 39 1 0.2710 -1.8874 5.7061 40 1 1.8251 -2.6733 6.1039 41 1 2.3235 0.8845 7.7799 42 1 0.6096 0.8858 7.2545 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117672005.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:16 Heat of formation + Delta-G solvation = -145.401266 kcal Electronic energy + Delta-G solvation = -22227.096431 eV Core-core repulsion = 18785.405487 eV Total energy + Delta-G solvation = -3441.690944 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.31033 -39.75021 -37.83295 -37.21666 -34.54119 -33.73856 -32.17417 -29.51045 -27.87311 -27.09993 -26.60900 -25.87897 -23.07723 -21.80885 -21.52150 -20.21750 -18.46943 -17.70725 -17.05823 -16.87744 -16.45964 -16.30124 -15.63585 -15.43487 -14.61342 -14.56583 -14.16922 -13.96578 -13.56995 -13.54567 -13.16032 -12.89565 -12.82951 -12.39789 -12.18849 -12.10964 -11.81217 -11.57217 -11.24120 -11.07156 -10.93142 -10.78517 -10.70642 -10.50935 -10.49276 -10.33804 -9.96365 -9.93506 -9.24815 -9.00712 -8.88148 -8.41363 -6.05501 -4.07244 1.73129 2.60094 2.94554 3.16861 3.27659 3.33674 3.34554 3.58372 3.85526 4.20684 4.31092 4.40256 4.69795 4.87939 4.92163 5.05737 5.14700 5.22771 5.29853 5.39537 5.42635 5.52462 5.62372 5.65056 6.06132 6.11538 6.17652 6.28557 6.43354 6.48965 6.53871 6.64500 6.97007 6.98677 7.03647 7.14061 7.55412 7.58052 7.68544 7.92527 8.22757 8.34288 8.97270 9.56179 11.05866 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.053054 B = 0.002654 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.638933 B =10548.751731 C =10714.897930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.127 3.873 14 N -0.719 5.719 15 C 0.503 3.497 16 O -0.545 6.545 17 C -0.134 4.134 18 C -0.105 4.105 19 H 0.110 0.890 20 C 0.064 3.936 21 O -0.353 6.353 22 C 0.487 3.513 23 O -0.458 6.458 24 C -0.185 4.185 25 H 0.028 0.972 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.028 0.972 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.261 0.739 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.399 0.601 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.113 0.887 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.013 6.013 17.380 18.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.004 3.996 14 N -0.371 5.371 15 C 0.289 3.711 16 O -0.423 6.423 17 C -0.174 4.174 18 C -0.124 4.124 19 H 0.128 0.872 20 C -0.010 4.010 21 O -0.270 6.270 22 C 0.328 3.672 23 O -0.342 6.342 24 C -0.224 4.224 25 H 0.047 0.953 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.234 0.766 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.124 0.876 41 H 0.131 0.869 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.482 5.029 17.941 18.955 hybrid contribution -0.523 0.924 -1.262 1.649 sum -4.005 5.952 16.680 18.157 Atomic orbital electron populations 1.21763 0.95247 1.01180 1.00250 1.20908 0.95471 0.95853 0.95079 1.21764 1.00553 0.95875 1.00246 1.19087 0.96356 0.95226 0.89475 1.21129 1.31392 1.12105 0.90515 0.92326 1.25017 0.95278 0.95067 0.99112 1.69952 1.36782 1.22970 1.23626 0.86705 0.79143 0.79764 0.82648 1.20322 1.21370 1.20313 1.21655 0.98972 0.96045 0.82888 1.46232 1.52973 1.31886 1.05968 1.20489 0.80835 0.84952 0.84833 1.90718 1.38170 1.26514 1.86899 1.21730 1.02864 1.01092 0.91742 1.22242 1.03079 0.94099 0.93020 0.87215 1.24097 1.00749 0.99121 0.77020 1.86831 1.70837 1.44936 1.24361 1.23176 0.72318 0.83451 0.88302 1.90725 1.47421 1.82155 1.13922 1.23171 1.05700 0.98764 0.94746 0.95277 0.91396 0.93348 0.93362 0.91390 0.95282 0.96358 0.96349 0.92928 0.91736 0.91720 0.76555 0.88199 0.87776 0.88597 0.87625 0.86856 0.86463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 8.05 37.15 0.30 -1.73 16 2 C -0.07 -1.26 0.54 -154.51 -0.08 -1.35 16 3 C -0.13 -2.03 8.05 37.16 0.30 -1.73 16 4 C 0.04 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.13 7.65 -34.44 -0.26 -13.39 16 6 H 0.06 1.43 5.68 -52.48 -0.30 1.14 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 9 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 C 0.13 2.00 4.56 -4.04 -0.02 1.98 16 14 N -0.72 -8.39 4.96 -60.29 -0.30 -8.69 16 15 C 0.50 5.59 7.67 -10.99 -0.08 5.51 16 16 O -0.54 -8.15 15.36 5.55 0.09 -8.07 16 17 C -0.13 -0.83 4.99 -27.88 -0.14 -0.97 16 18 C -0.11 -0.73 2.66 -89.06 -0.24 -0.96 16 19 H 0.11 0.85 7.88 -51.93 -0.41 0.45 16 20 C 0.06 0.53 6.82 37.82 0.26 0.79 16 21 O -0.35 -3.75 10.96 -38.91 -0.43 -4.17 16 22 C 0.49 5.04 8.65 36.48 0.32 5.35 16 23 O -0.46 -6.37 18.00 -18.35 -0.33 -6.70 16 24 C -0.19 -1.11 6.50 -26.51 -0.17 -1.28 16 25 H 0.03 0.36 6.86 -51.93 -0.36 0.00 16 26 H 0.07 1.19 6.62 -51.92 -0.34 0.85 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.20 6.62 -51.93 -0.34 0.85 16 30 H 0.03 0.36 6.86 -51.93 -0.36 0.00 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.40 3.75 6.16 -40.82 -0.25 3.49 16 37 H 0.10 0.43 7.96 -51.93 -0.41 0.01 16 38 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.69 7.65 -51.93 -0.40 0.30 16 40 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.12 0.46 7.91 -51.93 -0.41 0.05 16 LS Contribution 340.83 15.07 5.14 5.14 Total: -1.00 -32.20 340.83 -6.67 -38.88 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -6.52 Total: -1.32 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -0.04 Total: -5.63 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.44 Total: -33.75 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.67 Total: -18.94 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.20 -6.67 -38.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117672005.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.523 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds