Wall clock time and date at job start Tue Mar 31 2020 05:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00079 * 2 1 4 4 H 1.48496 * 109.47210 * 264.90813 * 3 2 1 5 5 H 1.48507 * 109.46908 * 24.91064 * 3 2 1 6 6 H 1.48502 * 109.46923 * 144.90429 * 3 2 1 7 7 C 1.37873 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00009 * 185.84552 * 7 2 1 9 9 C 1.50698 * 120.00074 * 5.84454 * 7 2 1 10 10 O 1.42901 * 110.77831 * 59.30796 * 9 7 2 11 11 C 1.55158 * 110.71787 * 296.07258 * 9 7 2 12 12 C 1.55129 * 101.48390 * 205.96811 * 11 9 7 13 13 N 1.47428 * 104.72474 * 37.29564 * 12 11 9 14 14 C 1.34771 * 125.65059 * 155.81837 * 13 12 11 15 15 O 1.21279 * 120.00198 * 179.68815 * 14 13 12 16 16 C 1.50705 * 120.00186 * 359.69241 * 14 13 12 17 17 C 1.52992 * 109.47071 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.47012 * 179.97438 * 17 16 14 19 19 H 1.08997 * 110.45483 * 54.29842 * 18 17 16 20 20 C 1.54511 * 110.51053 * 176.90241 * 18 17 16 21 21 C 1.54485 * 104.06099 * 118.64670 * 20 18 17 22 22 O 1.44423 * 104.80114 * 23.97803 * 21 20 18 23 23 C 1.44644 * 105.37103 * 319.56164 * 22 21 20 24 24 C 1.47024 * 108.69869 * 335.55162 * 13 12 11 25 25 H 0.96998 * 119.99754 * 359.97438 * 1 2 3 26 26 H 0.96697 * 114.00313 * 297.61844 * 10 9 7 27 27 H 1.08994 * 111.00303 * 324.20111 * 11 9 7 28 28 H 1.08994 * 111.00576 * 88.02475 * 11 9 7 29 29 H 1.09001 * 110.50162 * 278.45533 * 12 11 9 30 30 H 1.08999 * 110.34406 * 156.05557 * 12 11 9 31 31 H 1.08997 * 109.47166 * 59.99888 * 16 14 13 32 32 H 1.08996 * 109.46661 * 299.99856 * 16 14 13 33 33 H 1.09002 * 109.47744 * 59.99535 * 17 16 14 34 34 H 1.09002 * 109.47441 * 299.99664 * 17 16 14 35 35 H 1.08997 * 110.51155 * 237.29071 * 20 18 17 36 36 H 1.08997 * 110.51154 * 359.97438 * 20 18 17 37 37 H 1.09001 * 110.36913 * 142.81233 * 21 20 18 38 38 H 1.09004 * 110.36674 * 265.14220 * 21 20 18 39 39 H 1.09004 * 110.34456 * 281.60007 * 23 22 21 40 40 H 1.08997 * 110.50530 * 159.18528 * 23 22 21 41 41 H 1.08995 * 109.88006 * 120.70691 * 24 13 12 42 42 H 1.09002 * 109.88395 * 241.71134 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6043 1.9843 -1.3945 5 1 1.3969 2.6814 0.5898 6 1 3.4888 1.4736 0.8050 7 6 2.0045 -1.1940 -0.0005 8 1 3.0803 -1.1965 0.0947 9 6 1.2570 -2.4957 -0.1340 10 8 0.5177 -2.5327 -1.3564 11 6 0.3188 -2.7170 1.0818 12 6 0.2104 -4.2642 1.1107 13 7 1.5547 -4.7410 0.7379 14 6 2.0791 -5.9408 1.0571 15 8 3.1984 -6.2302 0.6907 16 6 1.2747 -6.9227 1.8695 17 6 2.0955 -8.1948 2.0906 18 6 1.2791 -9.1915 2.9159 19 1 0.3126 -9.3736 2.4461 20 6 2.0556 -10.5161 3.0881 21 6 2.2473 -10.6430 4.6158 22 8 1.1811 -9.8546 5.1881 23 6 1.0903 -8.6730 4.3588 24 6 2.2260 -3.6934 -0.0454 25 1 -0.4850 0.8401 0.0004 26 1 -0.1655 -1.8517 -1.4237 27 1 0.7702 -2.3365 1.9980 28 1 -0.6565 -2.2614 0.9108 29 1 -0.5284 -4.6087 0.3871 30 1 -0.0495 -4.6073 2.1121 31 1 0.3571 -7.1701 1.3359 32 1 1.0261 -6.4790 2.8335 33 1 3.0130 -7.9471 2.6244 34 1 2.3445 -8.6387 1.1267 35 1 1.4720 -11.3534 2.7056 36 1 3.0209 -10.4611 2.5849 37 1 2.1569 -11.6845 4.9243 38 1 3.2168 -10.2416 4.9111 39 1 1.8815 -7.9683 4.6153 40 1 0.1127 -8.2037 4.4685 41 1 3.1461 -3.3897 0.4536 42 1 2.4519 -4.0652 -1.0449 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118213952.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:50 Heat of formation + Delta-G solvation = -145.495608 kcal Electronic energy + Delta-G solvation = -22721.967952 eV Core-core repulsion = 19280.272917 eV Total energy + Delta-G solvation = -3441.695035 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.90366 -39.28223 -37.36238 -34.54613 -34.33859 -32.25156 -31.10587 -29.77896 -28.79826 -28.10341 -25.47952 -24.08649 -22.82181 -22.04352 -20.42118 -19.72447 -18.66822 -17.29252 -16.76354 -16.54204 -15.91996 -15.65105 -15.31273 -14.98459 -14.93715 -14.26162 -14.22800 -13.77348 -13.16673 -13.05938 -12.79161 -12.43379 -12.20926 -12.11404 -11.69584 -11.56779 -11.46880 -11.40037 -11.36071 -11.07413 -10.92308 -10.82628 -10.67743 -10.60683 -10.50602 -10.15157 -9.99036 -9.48932 -9.30653 -8.73135 -8.25587 -8.03482 -6.31679 -4.38739 3.04647 3.19350 3.26112 3.29074 3.49821 3.77651 4.24846 4.33758 4.51354 4.66004 4.85390 4.89878 4.96408 5.05516 5.16549 5.20091 5.38942 5.48216 5.49929 5.53617 5.58635 5.64380 5.70931 5.75072 5.80380 5.89185 5.98252 6.07009 6.19676 6.22060 6.42409 6.57022 6.66877 6.87565 6.94252 7.25741 7.32136 7.70283 7.99067 8.10114 8.59987 8.64336 9.26582 9.33511 10.75515 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.035729 B = 0.003172 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.487782 B = 8823.770256 C = 8925.757192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.246 3.754 10 O -0.584 6.584 11 C -0.134 4.134 12 C 0.094 3.906 13 N -0.609 5.609 14 C 0.519 3.481 15 O -0.558 6.558 16 C -0.137 4.137 17 C -0.094 4.094 18 C -0.123 4.123 19 H 0.084 0.916 20 C -0.152 4.152 21 C 0.044 3.956 22 O -0.380 6.380 23 C 0.046 3.954 24 C 0.122 3.878 25 H 0.268 0.732 26 H 0.381 0.619 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.441 -14.984 6.881 16.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.206 3.794 10 O -0.393 6.393 11 C -0.173 4.173 12 C -0.029 4.029 13 N -0.342 5.342 14 C 0.308 3.692 15 O -0.437 6.437 16 C -0.177 4.177 17 C -0.132 4.132 18 C -0.141 4.141 19 H 0.103 0.897 20 C -0.190 4.190 21 C -0.033 4.033 22 O -0.299 6.299 23 C -0.031 4.031 24 C 0.001 3.999 25 H 0.078 0.922 26 H 0.231 0.769 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.110 0.890 41 H 0.089 0.911 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.705 -15.637 6.779 17.058 hybrid contribution 0.046 1.564 -0.077 1.566 sum -0.660 -14.073 6.701 15.601 Atomic orbital electron populations 1.69732 1.05933 1.27651 1.50077 1.24982 0.95031 0.99530 0.93427 0.86440 0.79761 0.82299 0.78532 1.20286 1.21115 1.19787 1.21495 0.94134 0.90414 1.51337 0.91786 1.19454 0.87467 0.90870 0.81581 1.86142 1.53839 1.58855 1.40470 1.23352 1.02794 0.89882 1.01236 1.22573 0.83715 0.98013 0.98598 1.48697 1.17256 1.15127 1.53102 1.20235 0.86880 0.81395 0.80714 1.90656 1.20116 1.77047 1.55922 1.21667 0.99779 0.95369 1.00863 1.21397 0.97920 0.93146 1.00695 1.22605 1.00034 0.95004 0.96499 0.89724 1.23007 1.01447 0.97672 0.96828 1.23411 0.91102 0.96485 0.92289 1.89135 1.54532 1.33320 1.52885 1.23638 1.02464 0.88376 0.88581 1.22056 0.96189 0.87086 0.94616 0.92226 0.76931 0.91391 0.89341 0.91928 0.92137 0.89121 0.89224 0.90922 0.90729 0.90691 0.90097 0.89315 0.92280 0.91852 0.88957 0.91080 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.57 10.72 55.43 0.59 -21.97 16 2 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 3 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.54 -13.86 8.21 -34.44 -0.28 -14.14 16 8 H 0.06 1.67 7.56 -52.49 -0.40 1.27 16 9 C 0.25 5.84 0.84 -89.94 -0.08 5.76 16 10 O -0.58 -14.37 13.06 -35.23 -0.46 -14.83 16 11 C -0.13 -2.81 5.49 -24.46 -0.13 -2.94 16 12 C 0.09 1.62 6.69 -2.41 -0.02 1.61 16 13 N -0.61 -11.73 3.32 -170.38 -0.57 -12.29 16 14 C 0.52 9.30 7.85 -10.99 -0.09 9.21 16 15 O -0.56 -11.81 16.31 5.56 0.09 -11.71 16 16 C -0.14 -1.70 4.56 -27.88 -0.13 -1.83 16 17 C -0.09 -1.06 3.71 -26.73 -0.10 -1.16 16 18 C -0.12 -1.13 3.13 -89.05 -0.28 -1.41 16 19 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 20 C -0.15 -1.26 6.74 -25.16 -0.17 -1.43 16 21 C 0.04 0.38 7.64 37.94 0.29 0.67 16 22 O -0.38 -4.30 11.65 -35.23 -0.41 -4.71 16 23 C 0.05 0.45 6.43 37.93 0.24 0.69 16 24 C 0.12 2.74 6.21 -3.06 -0.02 2.72 16 25 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 26 H 0.38 9.30 7.52 45.56 0.34 9.64 16 27 H 0.07 1.47 8.04 -51.93 -0.42 1.06 16 28 H 0.09 1.92 7.53 -51.93 -0.39 1.53 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.86 7.48 -51.93 -0.39 0.47 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 0.98 7.26 -51.93 -0.38 0.60 16 33 H 0.07 0.89 7.97 -51.93 -0.41 0.48 16 34 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.65 7.73 -51.93 -0.40 0.25 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.62 7.78 -51.93 -0.40 0.22 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 1.63 7.64 -51.93 -0.40 1.23 16 42 H 0.06 1.39 8.07 -51.93 -0.42 0.97 16 LS Contribution 336.72 15.07 5.07 5.07 Total: -1.00 -28.88 336.72 -7.73 -36.60 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -6.18 Total: 9.27 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -0.85 Total: -0.48 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.03 Total: -34.27 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.78 Total: -31.26 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.88 -7.73 -36.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118213952.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.892 kcal (2) G-P(sol) polarization free energy of solvation -28.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds