Wall clock time and date at job start Tue Mar 31 2020 05:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00435 * 2 1 4 4 H 1.48500 * 109.47229 * 274.65038 * 3 2 1 5 5 H 1.48498 * 109.46605 * 34.65320 * 3 2 1 6 6 H 1.48500 * 109.46874 * 154.64920 * 3 2 1 7 7 C 1.37882 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00021 * 173.97170 * 7 2 1 9 9 C 1.50699 * 119.99644 * 354.24410 * 7 2 1 10 10 O 1.42906 * 110.64137 * 299.93814 * 9 7 2 11 11 C 1.55154 * 110.72353 * 63.27648 * 9 7 2 12 12 C 1.54905 * 101.58384 * 153.86450 * 11 9 7 13 13 N 1.47428 * 104.83378 * 322.99298 * 12 11 9 14 14 C 1.34775 * 125.64748 * 204.09546 * 13 12 11 15 15 O 1.21281 * 119.99535 * 180.02562 * 14 13 12 16 16 C 1.50698 * 120.00167 * 0.03687 * 14 13 12 17 17 C 1.52995 * 109.47252 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47423 * 180.02562 * 17 16 14 19 19 H 1.09007 * 110.79935 * 308.62524 * 18 17 16 20 20 C 1.54817 * 110.90957 * 184.99973 * 18 17 16 21 21 C 1.54101 * 104.18493 * 220.91785 * 20 18 17 22 22 O 1.43736 * 107.29780 * 357.96922 * 21 20 18 23 23 C 1.44386 * 106.97556 * 26.51253 * 22 21 20 24 24 C 1.47017 * 108.70037 * 24.12516 * 13 12 11 25 25 H 0.97000 * 119.99427 * 359.97438 * 1 2 3 26 26 H 0.96694 * 113.99941 * 59.30045 * 10 9 7 27 27 H 1.09001 * 111.00180 * 271.93870 * 11 9 7 28 28 H 1.09001 * 111.00395 * 35.78786 * 11 9 7 29 29 H 1.09004 * 110.36998 * 204.15077 * 12 11 9 30 30 H 1.09003 * 110.36945 * 81.82857 * 12 11 9 31 31 H 1.08997 * 109.47256 * 300.00115 * 16 14 13 32 32 H 1.08997 * 109.47301 * 60.00082 * 16 14 13 33 33 H 1.09006 * 109.47038 * 300.00296 * 17 16 14 34 34 H 1.09001 * 109.47471 * 60.00021 * 17 16 14 35 35 H 1.09001 * 110.48723 * 339.59468 * 20 18 17 36 36 H 1.09003 * 110.48701 * 102.10541 * 20 18 17 37 37 H 1.08999 * 109.87388 * 117.39847 * 21 20 18 38 38 H 1.09007 * 109.87401 * 238.39343 * 21 20 18 39 39 H 1.09001 * 110.61991 * 201.43934 * 23 22 21 40 40 H 1.08998 * 110.61330 * 78.43970 * 23 22 21 41 41 H 1.09000 * 109.88433 * 239.52459 * 24 13 12 42 42 H 1.09006 * 109.88106 * 118.36168 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.3985 2.1031 -1.3955 5 1 1.4993 2.6222 0.7961 6 1 3.5925 1.4136 0.5995 7 6 2.0045 -1.1941 -0.0005 8 1 3.0800 -1.1967 -0.0988 9 6 1.2566 -2.4959 0.1298 10 8 0.5307 -2.5389 1.3600 11 6 0.3079 -2.7074 -1.0795 12 6 0.1996 -4.2521 -1.1234 13 7 1.5444 -4.7352 -0.7608 14 6 2.0648 -5.9331 -1.0934 15 8 3.1870 -6.2262 -0.7388 16 6 1.2525 -6.9082 -1.9060 17 6 2.0694 -8.1800 -2.1424 18 6 1.2449 -9.1697 -2.9680 19 1 0.2605 -9.3183 -2.5241 20 6 1.9911 -10.5175 -3.1213 21 6 1.7389 -10.9243 -4.5861 22 8 0.8903 -9.9208 -5.1683 23 6 1.1235 -8.6967 -4.4390 24 6 2.2235 -3.6941 0.0242 25 1 -0.4849 0.8401 0.0004 26 1 -0.1176 -1.8284 1.4591 27 1 -0.6657 -2.2526 -0.8966 28 1 0.7519 -2.3207 -1.9968 29 1 -0.0656 -4.5855 -2.1268 30 1 -0.5369 -4.6015 -0.3997 31 1 0.3391 -7.1585 -1.3664 32 1 0.9961 -6.4572 -2.8647 33 1 2.9830 -7.9300 -2.6819 34 1 2.3254 -8.6309 -1.1837 35 1 3.0578 -10.3858 -2.9401 36 1 1.5784 -11.2617 -2.4401 37 1 2.6846 -10.9689 -5.1263 38 1 1.2459 -11.8958 -4.6213 39 1 0.2811 -8.0146 -4.5545 40 1 2.0491 -8.2243 -4.7680 41 1 3.1397 -3.3876 -0.4804 42 1 2.4550 -4.0724 1.0199 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118213954.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:53 Heat of formation + Delta-G solvation = -145.949772 kcal Electronic energy + Delta-G solvation = -22681.717995 eV Core-core repulsion = 19240.003266 eV Total energy + Delta-G solvation = -3441.714729 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.88884 -39.29888 -37.36518 -34.56314 -34.34648 -32.25384 -31.15315 -29.80589 -28.83521 -28.11935 -25.49335 -24.07863 -22.67114 -21.99985 -20.55902 -19.71954 -18.66714 -17.30471 -16.81495 -16.61173 -15.89234 -15.62270 -15.25632 -15.00011 -14.96253 -14.22972 -14.20211 -13.76436 -13.22881 -13.07596 -12.94804 -12.34518 -12.19455 -12.10803 -11.75956 -11.55379 -11.44358 -11.40350 -11.34878 -11.14357 -10.92285 -10.86572 -10.67049 -10.59952 -10.51635 -10.15391 -9.89349 -9.47967 -9.29213 -8.75074 -8.24845 -8.03192 -6.31971 -4.39365 3.04914 3.17402 3.25767 3.30665 3.49088 3.74786 4.24454 4.29562 4.52036 4.64666 4.83086 4.87572 4.95901 5.04636 5.16624 5.20959 5.40050 5.48913 5.51025 5.53569 5.57087 5.63023 5.70103 5.75068 5.81518 5.89807 5.99337 6.06478 6.20051 6.22220 6.42991 6.63444 6.67140 6.88445 6.95136 7.27169 7.33363 7.69924 7.97952 8.10478 8.60093 8.64146 9.26383 9.32922 10.74799 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.036477 B = 0.003139 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.415417 B = 8917.060125 C = 9044.565046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.902 3.098 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.246 3.754 10 O -0.585 6.585 11 C -0.133 4.133 12 C 0.094 3.906 13 N -0.609 5.609 14 C 0.519 3.481 15 O -0.558 6.558 16 C -0.136 4.136 17 C -0.092 4.092 18 C -0.122 4.122 19 H 0.087 0.913 20 C -0.153 4.153 21 C 0.047 3.953 22 O -0.382 6.382 23 C 0.048 3.952 24 C 0.122 3.878 25 H 0.268 0.732 26 H 0.381 0.619 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.552 -15.016 -6.864 16.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.729 3.271 4 H -0.206 1.206 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.206 3.794 10 O -0.393 6.393 11 C -0.172 4.172 12 C -0.029 4.029 13 N -0.342 5.342 14 C 0.308 3.692 15 O -0.438 6.438 16 C -0.176 4.176 17 C -0.130 4.130 18 C -0.141 4.141 19 H 0.105 0.895 20 C -0.191 4.191 21 C -0.030 4.030 22 O -0.301 6.301 23 C -0.028 4.028 24 C 0.001 3.999 25 H 0.078 0.922 26 H 0.231 0.769 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.850 -15.677 -6.770 17.098 hybrid contribution 0.099 1.533 0.052 1.538 sum -0.751 -14.144 -6.718 15.676 Atomic orbital electron populations 1.69749 1.05919 1.27605 1.50084 1.24992 0.95036 0.99550 0.93461 0.86416 0.80065 0.82496 0.78105 1.20571 1.20922 1.19632 1.21516 0.94171 0.90384 1.51343 0.91765 1.19455 0.87529 0.90908 0.81531 1.86136 1.57279 1.55504 1.40415 1.23296 1.02839 0.89897 1.01153 1.22533 0.83697 0.97994 0.98663 1.48695 1.17077 1.15388 1.53011 1.20232 0.86967 0.81360 0.80659 1.90656 1.19978 1.76796 1.56324 1.21660 0.99712 0.95395 1.00857 1.21300 0.97878 0.93130 1.00703 1.22803 1.00187 0.94765 0.96331 0.89478 1.23001 1.01798 0.97345 0.96929 1.23136 0.94670 0.92592 0.92640 1.88858 1.63836 1.19843 1.57525 1.23724 1.01842 0.87586 0.89688 1.22054 0.96075 0.87248 0.94567 0.92246 0.76893 0.89282 0.91457 0.92143 0.91953 0.89121 0.89201 0.90860 0.90697 0.90292 0.90447 0.92515 0.90070 0.88801 0.91846 0.91065 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.52 10.70 55.43 0.59 -21.93 16 2 C 0.07 1.83 5.26 -17.82 -0.09 1.74 16 3 Si 0.90 20.03 29.54 -169.99 -5.02 15.00 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -13.84 8.21 -34.44 -0.28 -14.12 16 8 H 0.06 1.67 7.56 -52.49 -0.40 1.28 16 9 C 0.25 5.83 0.85 -89.94 -0.08 5.75 16 10 O -0.58 -14.38 13.08 -35.23 -0.46 -14.84 16 11 C -0.13 -2.80 5.46 -24.59 -0.13 -2.93 16 12 C 0.09 1.63 6.68 -2.53 -0.02 1.61 16 13 N -0.61 -11.73 3.33 -170.52 -0.57 -12.30 16 14 C 0.52 9.29 7.85 -10.99 -0.09 9.21 16 15 O -0.56 -11.79 16.31 5.56 0.09 -11.70 16 16 C -0.14 -1.69 4.60 -27.89 -0.13 -1.82 16 17 C -0.09 -1.03 3.90 -26.74 -0.10 -1.14 16 18 C -0.12 -1.12 3.09 -88.61 -0.27 -1.40 16 19 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 20 C -0.15 -1.26 6.60 -25.20 -0.17 -1.42 16 21 C 0.05 0.40 7.70 37.73 0.29 0.69 16 22 O -0.38 -4.30 11.52 -35.23 -0.41 -4.71 16 23 C 0.05 0.47 6.63 38.21 0.25 0.72 16 24 C 0.12 2.74 6.22 -3.07 -0.02 2.72 16 25 H 0.27 6.47 8.31 -40.82 -0.34 6.14 16 26 H 0.38 9.33 7.50 45.56 0.34 9.67 16 27 H 0.09 1.95 7.51 -51.93 -0.39 1.56 16 28 H 0.07 1.46 8.04 -51.93 -0.42 1.05 16 29 H 0.06 0.86 7.48 -51.93 -0.39 0.47 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.09 0.98 7.43 -51.93 -0.39 0.59 16 33 H 0.07 0.89 7.94 -51.93 -0.41 0.48 16 34 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 35 H 0.08 0.63 7.86 -51.93 -0.41 0.23 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.61 7.93 -51.93 -0.41 0.20 16 41 H 0.07 1.63 7.65 -51.93 -0.40 1.23 16 42 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 LS Contribution 337.22 15.07 5.08 5.08 Total: -1.00 -28.78 337.22 -7.73 -36.51 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -6.20 Total: 9.29 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -0.84 Total: -0.40 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.03 Total: -34.23 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.78 Total: -31.25 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.78 -7.73 -36.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118213954.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.444 kcal (2) G-P(sol) polarization free energy of solvation -28.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds