Wall clock time and date at job start Tue Mar 31 2020 05:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86797 * 119.99459 * 2 1 4 4 H 1.48504 * 109.47246 * 239.99332 * 3 2 1 5 5 H 1.48501 * 109.47578 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47245 * 119.99920 * 3 2 1 7 7 C 1.40045 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99612 * 180.02562 * 7 2 1 9 9 C 1.46374 * 120.00158 * 0.02562 * 7 2 1 10 10 O 1.21679 * 119.99916 * 5.04163 * 9 7 2 11 11 N 1.34774 * 119.99654 * 185.04944 * 9 7 2 12 12 C 1.46941 * 120.64625 * 4.31330 * 11 9 7 13 13 C 1.53108 * 108.76603 * 233.53184 * 12 11 9 14 14 C 1.53066 * 109.49167 * 185.28236 * 13 12 11 15 15 C 1.53115 * 109.15969 * 297.00668 * 14 13 12 16 16 O 1.42901 * 109.40932 * 302.52527 * 15 14 13 17 17 C 1.42905 * 114.13772 * 61.17536 * 16 15 14 18 18 C 1.53095 * 109.46360 * 65.59605 * 13 12 11 19 19 C 1.52928 * 109.51519 * 305.49568 * 13 12 11 20 20 C 1.53061 * 109.54023 * 61.17549 * 19 13 12 21 21 C 1.46932 * 120.63729 * 184.34045 * 11 9 7 22 22 H 1.08996 * 109.57830 * 246.13219 * 21 11 9 23 23 C 1.52995 * 109.57916 * 6.53944 * 21 11 9 24 24 O 1.42900 * 109.47163 * 288.51414 * 23 21 11 25 25 H 0.96995 * 120.00222 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.58941 * 353.31293 * 12 11 9 27 27 H 1.08995 * 109.59119 * 113.75214 * 12 11 9 28 28 H 1.09002 * 109.52181 * 56.91069 * 14 13 12 29 29 H 1.08996 * 109.52161 * 177.10478 * 14 13 12 30 30 H 1.09001 * 109.48138 * 182.54360 * 15 14 13 31 31 H 1.09004 * 109.49291 * 62.50915 * 15 14 13 32 32 H 1.08999 * 109.48690 * 178.83350 * 17 16 15 33 33 H 1.09005 * 109.49729 * 58.79581 * 17 16 15 34 34 H 1.08993 * 109.52693 * 182.89316 * 18 13 12 35 35 H 1.09002 * 109.52577 * 303.09494 * 18 13 12 36 36 H 1.09005 * 109.43046 * 301.17362 * 19 13 12 37 37 H 1.09001 * 109.49010 * 181.21668 * 19 13 12 38 38 H 1.09008 * 109.50070 * 178.85176 * 20 19 13 39 39 H 1.09001 * 109.50133 * 58.78914 * 20 19 13 40 40 H 1.08993 * 109.47440 * 48.51734 * 23 21 11 41 41 H 1.09002 * 109.46870 * 168.52286 * 23 21 11 42 42 H 0.96704 * 113.99985 * 175.02646 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0945 1.6965 -1.2124 5 1 1.2755 2.7465 -0.0006 6 1 3.0943 1.6966 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2127 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0620 -2.4826 -0.0925 11 7 1.9452 -3.6453 0.1038 12 6 3.3998 -3.6568 0.3116 13 6 4.0448 -4.5297 -0.7683 14 6 5.5444 -4.6608 -0.4908 15 6 6.1948 -3.2775 -0.5804 16 8 5.9428 -2.7170 -1.8705 17 6 4.5574 -2.5261 -2.1643 18 6 3.8412 -3.8791 -2.1390 19 6 3.3980 -5.9154 -0.7587 20 6 1.9047 -5.7855 -1.0687 21 6 1.2353 -4.9283 0.0101 22 1 1.2847 -5.4439 0.9691 23 6 -0.2264 -4.6792 -0.3667 24 8 -0.9132 -4.1016 0.7454 25 1 -0.4850 0.8400 -0.0004 26 1 3.7873 -2.6405 0.2396 27 1 3.6251 -4.0672 1.2959 28 1 5.6956 -5.0704 0.5080 29 1 5.9949 -5.3236 -1.2295 30 1 7.2701 -3.3709 -0.4283 31 1 5.7742 -2.6274 0.1868 32 1 4.4536 -2.0782 -3.1526 33 1 4.1148 -1.8664 -1.4179 34 1 4.2547 -4.5247 -2.9137 35 1 2.7761 -3.7308 -2.3173 36 1 3.5267 -6.3690 0.2241 37 1 3.8722 -6.5433 -1.5130 38 1 1.4484 -6.7754 -1.0818 39 1 1.7750 -5.3122 -2.0420 40 1 -0.2716 -3.9972 -1.2157 41 1 -0.6988 -5.6243 -0.6343 42 1 -1.8262 -3.8463 0.5544 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120776503.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:12 Heat of formation + Delta-G solvation = -116.422830 kcal Electronic energy + Delta-G solvation = -25140.091956 eV Core-core repulsion = 21699.657611 eV Total energy + Delta-G solvation = -3440.434344 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.32843 -38.06142 -35.90887 -35.14248 -32.91500 -32.26660 -31.69140 -30.76257 -28.16821 -26.32275 -24.96406 -24.17326 -23.22085 -21.91746 -20.96886 -19.01702 -18.11836 -16.58065 -16.10150 -15.92114 -15.68105 -15.49270 -14.81998 -14.60480 -14.19143 -14.05876 -13.95573 -13.32230 -13.15228 -12.84739 -12.58498 -12.38360 -11.93177 -11.72050 -11.62644 -11.44005 -11.18610 -11.06037 -11.00503 -10.89357 -10.64918 -10.47203 -10.23374 -10.14025 -9.88766 -9.82117 -9.62881 -9.00010 -8.91892 -8.58870 -7.18473 -7.01287 -6.11683 -4.59886 3.15139 3.20718 3.21967 4.08627 4.22872 4.49228 4.60114 4.87533 4.92680 5.06803 5.13738 5.35251 5.44442 5.55756 5.60481 5.65320 5.77710 5.79880 5.88341 5.93937 5.96803 6.06215 6.11830 6.13790 6.17135 6.21104 6.25013 6.27854 6.42493 6.48600 6.53264 6.58584 6.69981 6.72921 6.97513 7.46405 7.56274 7.63039 8.15986 8.39564 8.82328 9.05368 9.51578 10.62822 10.84676 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.013308 B = 0.009891 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.442759 B = 2830.228499 C = 4534.536986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.092 3.908 3 Si 0.896 3.104 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.546 4.546 8 H 0.068 0.932 9 C 0.558 3.442 10 O -0.540 6.540 11 N -0.632 5.632 12 C 0.129 3.871 13 C -0.077 4.077 14 C -0.140 4.140 15 C 0.059 3.941 16 O -0.390 6.390 17 C 0.049 3.951 18 C -0.133 4.133 19 C -0.099 4.099 20 C -0.129 4.129 21 C 0.154 3.846 22 H 0.049 0.951 23 C 0.105 3.895 24 O -0.541 6.541 25 H 0.267 0.733 26 H 0.095 0.905 27 H 0.039 0.961 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.006 0.994 42 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.813 -8.612 -2.407 11.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.128 4.128 3 Si 0.721 3.279 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.085 0.915 9 C 0.363 3.637 10 O -0.421 6.421 11 N -0.371 5.371 12 C 0.004 3.996 13 C -0.078 4.078 14 C -0.178 4.178 15 C -0.018 4.018 16 O -0.309 6.309 17 C -0.027 4.027 18 C -0.170 4.170 19 C -0.137 4.137 20 C -0.167 4.167 21 C 0.049 3.951 22 H 0.067 0.933 23 C 0.027 3.973 24 O -0.345 6.345 25 H 0.077 0.923 26 H 0.113 0.887 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.023 0.977 42 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 7.642 -8.537 -2.288 11.684 hybrid contribution -0.128 0.672 -0.043 0.686 sum 7.514 -7.864 -2.331 11.124 Atomic orbital electron populations 1.69980 1.06843 1.27094 1.35693 1.25622 0.94538 0.99885 0.92717 0.86619 0.80044 0.81751 0.79531 1.19202 1.20612 1.19344 1.20917 0.93081 0.89461 1.54777 0.91458 1.18088 0.87069 0.81847 0.76681 1.90564 1.13616 1.84737 1.53183 1.48149 1.05514 1.04780 1.78641 1.21556 0.82694 1.00557 0.94758 1.20957 0.93972 0.96084 0.96808 1.22170 0.95435 0.98216 1.02019 1.22554 0.99927 0.93397 0.85960 1.87845 1.25501 1.83244 1.34283 1.22849 0.80853 0.96838 1.02169 1.22091 1.02072 0.96892 0.95970 1.21448 0.95236 0.95883 1.01094 1.21931 0.95508 0.99302 0.99994 1.20741 0.91481 0.86359 0.96481 0.93271 1.21831 0.90532 0.92976 0.91954 1.86534 1.28708 1.83048 1.36190 0.92259 0.88737 0.94255 0.91187 0.91448 0.89602 0.92797 0.89550 0.90509 0.92417 0.89979 0.92261 0.92437 0.92045 0.91401 0.91962 0.97677 0.79268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.09 11.84 55.55 0.66 -21.43 16 2 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 3 Si 0.90 19.80 29.56 -169.99 -5.02 14.78 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.55 -14.56 8.50 -35.63 -0.30 -14.86 16 8 H 0.07 1.66 4.29 -52.48 -0.23 1.44 16 9 C 0.56 14.94 7.37 -12.99 -0.10 14.85 16 10 O -0.54 -15.77 9.18 -20.21 -0.19 -15.96 16 11 N -0.63 -13.83 2.37 -166.91 -0.40 -14.23 16 12 C 0.13 2.38 4.44 -3.75 -0.02 2.36 16 13 C -0.08 -1.16 0.52 -154.41 -0.08 -1.24 16 14 C -0.14 -1.79 4.92 -26.64 -0.13 -1.93 16 15 C 0.06 0.80 6.57 37.22 0.24 1.04 16 16 O -0.39 -6.32 10.76 -35.23 -0.38 -6.69 16 17 C 0.05 0.82 6.57 37.22 0.24 1.07 16 18 C -0.13 -2.13 4.36 -26.62 -0.12 -2.24 16 19 C -0.10 -1.37 4.72 -26.74 -0.13 -1.50 16 20 C -0.13 -1.98 5.01 -26.60 -0.13 -2.12 16 21 C 0.15 3.01 3.16 -67.60 -0.21 2.80 16 22 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 23 C 0.11 2.18 5.62 37.16 0.21 2.39 16 24 O -0.54 -12.63 10.77 -60.65 -0.65 -13.28 16 25 H 0.27 7.09 8.29 -40.82 -0.34 6.76 16 26 H 0.09 1.87 2.62 -51.93 -0.14 1.73 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.77 6.74 -51.93 -0.35 0.42 16 32 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.08 1.47 4.74 -51.93 -0.25 1.23 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.51 6.10 -51.93 -0.32 1.19 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 39 H 0.07 1.10 6.43 -51.93 -0.33 0.76 16 40 H 0.06 1.46 6.47 -51.93 -0.34 1.12 16 41 H 0.01 0.10 8.11 -51.93 -0.42 -0.32 16 42 H 0.36 7.40 9.12 45.56 0.42 7.82 16 LS Contribution 307.39 15.07 4.63 4.63 Total: -1.00 -31.73 307.39 -7.27 -39.00 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -5.31 Total: 10.19 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -0.61 Total: 2.99 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.26 Total: -35.66 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -1.22 Total: -35.93 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.73 -7.27 -39.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120776503.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.424 kcal (2) G-P(sol) polarization free energy of solvation -31.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds