Wall clock time and date at job start Tue Mar 31 2020 05:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86807 * 119.99419 * 2 1 4 4 H 1.48495 * 109.47200 * 269.84731 * 3 2 1 5 5 H 1.48495 * 109.46947 * 29.85110 * 3 2 1 6 6 H 1.48504 * 109.46884 * 149.84948 * 3 2 1 7 7 C 1.40040 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00100 * 346.28662 * 7 2 1 9 9 C 1.46383 * 119.99792 * 166.28760 * 7 2 1 10 10 O 1.21685 * 119.99892 * 352.80088 * 9 7 2 11 11 N 1.34779 * 119.99508 * 172.80607 * 9 7 2 12 12 C 1.46942 * 120.64660 * 6.19983 * 11 9 7 13 13 C 1.53100 * 108.77455 * 126.47481 * 12 11 9 14 14 C 1.53083 * 109.47296 * 294.33005 * 13 12 11 15 15 C 1.53113 * 109.15604 * 297.03705 * 14 13 12 16 16 O 1.42897 * 109.40182 * 302.50663 * 15 14 13 17 17 C 1.42914 * 114.13686 * 61.17744 * 16 15 14 18 18 C 1.53080 * 109.46856 * 174.66361 * 13 12 11 19 19 C 1.52929 * 109.49534 * 54.48388 * 13 12 11 20 20 C 1.53053 * 109.55523 * 298.81162 * 19 13 12 21 21 C 1.46928 * 120.63948 * 186.18081 * 11 9 7 22 22 H 1.08999 * 109.58371 * 113.74328 * 21 11 9 23 23 C 1.53004 * 109.58268 * 353.47469 * 21 11 9 24 24 O 1.42902 * 109.47019 * 68.69918 * 23 21 11 25 25 H 0.96995 * 120.00556 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.58532 * 246.25868 * 12 11 9 27 27 H 1.08998 * 109.58519 * 6.54373 * 12 11 9 28 28 H 1.09003 * 109.52415 * 56.93737 * 14 13 12 29 29 H 1.08998 * 109.52743 * 177.12921 * 14 13 12 30 30 H 1.08999 * 109.48300 * 182.53190 * 15 14 13 31 31 H 1.09006 * 109.49221 * 62.49399 * 15 14 13 32 32 H 1.08995 * 109.48217 * 178.84102 * 17 16 15 33 33 H 1.09000 * 109.49843 * 58.80507 * 17 16 15 34 34 H 1.09005 * 109.52045 * 182.85986 * 18 13 12 35 35 H 1.08997 * 109.52342 * 303.05618 * 18 13 12 36 36 H 1.09004 * 109.45765 * 58.84432 * 19 13 12 37 37 H 1.09003 * 109.45610 * 178.79235 * 19 13 12 38 38 H 1.08995 * 109.50119 * 301.27632 * 20 19 13 39 39 H 1.08994 * 109.49775 * 181.17371 * 20 19 13 40 40 H 1.08995 * 109.46975 * 188.69986 * 23 21 11 41 41 H 1.09000 * 109.47229 * 308.70107 * 23 21 11 42 42 H 0.96702 * 113.99539 * 182.10859 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.4913 2.0447 -1.4000 5 1 1.4364 2.6536 0.6969 6 1 3.5366 1.4413 0.7032 7 6 2.0070 -1.2127 -0.0005 8 1 1.4902 -2.1349 0.2208 9 6 3.4395 -1.2305 -0.3011 10 8 3.9948 -0.2154 -0.6777 11 7 4.1434 -2.3713 -0.1606 12 6 3.4656 -3.6347 0.1613 13 6 3.8669 -4.6873 -0.8755 14 6 3.3254 -4.2831 -2.2491 15 6 1.7953 -4.2584 -2.1985 16 8 1.3128 -5.5422 -1.7971 17 6 1.7483 -5.9504 -0.4986 18 6 3.2765 -6.0434 -0.4807 19 6 5.3917 -4.7894 -0.9353 20 6 5.9789 -3.4417 -1.3612 21 6 5.6032 -2.3758 -0.3270 22 1 6.0788 -2.6053 0.6266 23 6 6.0680 -1.0020 -0.8143 24 8 5.8862 -0.0406 0.2272 25 1 -0.4851 0.8400 -0.0004 26 1 3.7658 -3.9675 1.1549 27 1 2.3860 -3.4870 0.1361 28 1 3.6973 -3.2923 -2.5101 29 1 3.6536 -5.0050 -2.9969 30 1 1.4028 -4.0150 -3.1858 31 1 1.4672 -3.5061 -1.4811 32 1 1.3219 -6.9251 -0.2619 33 1 1.4199 -5.2205 0.2414 34 1 3.6035 -6.8035 -1.1903 35 1 3.6135 -6.3097 0.5211 36 1 5.7764 -5.0587 0.0483 37 1 5.6763 -5.5540 -1.6581 38 1 5.5775 -3.1612 -2.3349 39 1 7.0642 -3.5212 -1.4237 40 1 7.1229 -1.0501 -1.0843 41 1 5.4829 -0.7085 -1.6858 42 1 6.1305 0.8611 -0.0229 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120776504.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:15 Heat of formation + Delta-G solvation = -126.197794 kcal Electronic energy + Delta-G solvation = -25183.481929 eV Core-core repulsion = 21742.623710 eV Total energy + Delta-G solvation = -3440.858219 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.45237 -38.33297 -36.19834 -35.41378 -33.04810 -32.68436 -31.91988 -30.79524 -28.33553 -26.56550 -25.14039 -24.30253 -23.25678 -22.08286 -21.02594 -19.11889 -18.20357 -16.74422 -16.28201 -16.07553 -15.82354 -15.58393 -14.91558 -14.66469 -14.32221 -14.24047 -14.10002 -13.49633 -13.30505 -12.90807 -12.74419 -12.33974 -12.07662 -11.98577 -11.89875 -11.63575 -11.55190 -11.22915 -11.01235 -10.89872 -10.65614 -10.53366 -10.27343 -10.18804 -9.94770 -9.79044 -9.34894 -9.08864 -8.98466 -8.79790 -7.46432 -7.25434 -6.58095 -4.77415 3.48647 3.53753 3.82675 4.16253 4.23117 4.28426 4.61757 4.78749 4.81511 4.98323 5.01916 5.31113 5.36857 5.46738 5.51712 5.57766 5.60062 5.72758 5.76025 5.84387 5.90099 5.96645 5.99466 6.04861 6.07974 6.12324 6.15624 6.19950 6.33266 6.38816 6.44360 6.47751 6.55242 6.68184 6.82486 7.10029 7.56130 7.67612 7.93798 8.34662 8.57081 8.79103 9.22861 10.17814 10.42415 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016570 B = 0.008848 C = 0.006300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.413613 B = 3163.708679 C = 4443.443680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.103 3.897 3 Si 0.960 3.040 4 H -0.285 1.285 5 H -0.329 1.329 6 H -0.246 1.246 7 C -0.536 4.536 8 H 0.085 0.915 9 C 0.558 3.442 10 O -0.587 6.587 11 N -0.623 5.623 12 C 0.127 3.873 13 C -0.076 4.076 14 C -0.134 4.134 15 C 0.052 3.948 16 O -0.388 6.388 17 C 0.058 3.942 18 C -0.140 4.140 19 C -0.100 4.100 20 C -0.129 4.129 21 C 0.154 3.846 22 H 0.055 0.945 23 C 0.098 3.902 24 O -0.545 6.545 25 H 0.280 0.720 26 H 0.045 0.955 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.009 0.991 41 H 0.070 0.930 42 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.256 -9.802 -2.128 12.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.115 4.115 3 Si 0.793 3.207 4 H -0.212 1.212 5 H -0.261 1.261 6 H -0.171 1.171 7 C -0.572 4.572 8 H 0.102 0.898 9 C 0.368 3.632 10 O -0.479 6.479 11 N -0.358 5.358 12 C 0.003 3.997 13 C -0.078 4.078 14 C -0.172 4.172 15 C -0.024 4.024 16 O -0.307 6.307 17 C -0.019 4.019 18 C -0.178 4.178 19 C -0.138 4.138 20 C -0.168 4.168 21 C 0.050 3.950 22 H 0.073 0.927 23 C 0.020 3.980 24 O -0.348 6.348 25 H 0.090 0.910 26 H 0.063 0.937 27 H 0.118 0.882 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.027 0.973 41 H 0.088 0.912 42 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 8.023 -9.894 -2.104 12.911 hybrid contribution 0.672 1.110 -0.110 1.302 sum 8.695 -8.785 -2.214 12.557 Atomic orbital electron populations 1.69593 1.08113 1.29888 1.38222 1.25760 0.94596 1.02163 0.88961 0.85289 0.79288 0.77316 0.78817 1.21176 1.26119 1.17068 1.20759 0.90794 0.95777 1.49827 0.89754 1.18114 0.87379 0.80505 0.77239 1.90158 1.70456 1.32823 1.54429 1.47567 1.04289 1.08388 1.75523 1.21641 0.99592 0.83504 0.94982 1.20943 0.95175 0.95032 0.96607 1.22118 0.96628 1.02364 0.96086 1.22766 0.93186 0.85157 1.01315 1.87853 1.73041 1.36160 1.33631 1.22560 0.93439 1.00109 0.85771 1.22172 0.96726 0.96992 1.01918 1.21463 0.94455 0.96744 1.01112 1.21926 0.99843 0.95134 0.99859 1.20858 0.83301 0.93894 0.96981 0.92696 1.21984 0.94651 0.88100 0.93235 1.86555 1.90201 1.19169 1.38907 0.91012 0.93688 0.88235 0.90219 0.92232 0.89497 0.90606 0.89515 0.92659 0.91348 0.91108 0.92113 0.92230 0.91250 0.91796 0.97310 0.91169 0.79328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.28 13.92 55.55 0.77 -22.51 16 2 C 0.10 2.88 5.52 -17.37 -0.10 2.78 16 3 Si 0.96 24.84 26.00 -169.99 -4.42 20.42 16 4 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 5 H -0.33 -8.33 7.11 56.52 0.40 -7.93 16 6 H -0.25 -6.64 6.48 56.52 0.37 -6.27 16 7 C -0.54 -14.55 9.06 -35.63 -0.32 -14.87 16 8 H 0.08 2.30 5.39 -52.49 -0.28 2.01 16 9 C 0.56 14.07 7.09 -12.98 -0.09 13.98 16 10 O -0.59 -15.42 6.39 -20.05 -0.13 -15.55 16 11 N -0.62 -12.95 2.37 -166.90 -0.40 -13.34 16 12 C 0.13 2.27 4.39 -3.75 -0.02 2.26 16 13 C -0.08 -1.12 0.52 -154.41 -0.08 -1.20 16 14 C -0.13 -2.11 4.37 -26.63 -0.12 -2.22 16 15 C 0.05 0.89 6.57 37.22 0.24 1.13 16 16 O -0.39 -6.43 10.76 -35.23 -0.38 -6.81 16 17 C 0.06 0.81 6.57 37.21 0.24 1.05 16 18 C -0.14 -1.76 4.92 -26.63 -0.13 -1.89 16 19 C -0.10 -1.31 4.72 -26.74 -0.13 -1.43 16 20 C -0.13 -1.84 5.03 -26.60 -0.13 -1.98 16 21 C 0.15 2.79 3.17 -67.60 -0.21 2.58 16 22 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 23 C 0.10 1.86 5.60 37.16 0.21 2.07 16 24 O -0.54 -11.67 10.86 -60.48 -0.66 -12.33 16 25 H 0.28 7.32 8.29 -40.82 -0.34 6.98 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.10 1.98 2.42 -51.93 -0.13 1.86 16 28 H 0.08 1.41 6.10 -51.93 -0.32 1.09 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.08 1.52 5.65 -51.93 -0.29 1.23 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.82 6.73 -51.93 -0.35 0.47 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 1.04 6.43 -51.93 -0.33 0.71 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.01 0.15 8.13 -51.93 -0.42 -0.28 16 41 H 0.07 1.48 6.34 -51.93 -0.33 1.15 16 42 H 0.36 6.61 9.12 45.56 0.42 7.02 16 LS Contribution 304.57 15.07 4.59 4.59 Total: -1.00 -31.02 304.57 -6.69 -37.71 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.44 Total: 5.57 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -0.63 Total: 2.25 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.38 Total: -35.85 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -1.16 Total: -34.69 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -4.42 Total: 20.42 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.02 -6.69 -37.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120776504.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.488 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds