Wall clock time and date at job start Tue Mar 31 2020 06:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47335 * 2 1 4 4 C 1.52997 * 109.47299 * 179.97438 * 3 2 1 5 5 O 1.45199 * 109.47147 * 179.97438 * 4 3 2 6 6 C 1.34232 * 116.99834 * 180.02562 * 5 4 3 7 7 O 1.20820 * 120.00278 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99638 * 180.02562 * 6 5 4 9 9 H 1.08994 * 110.91543 * 62.44818 * 8 6 5 10 10 C 1.55159 * 111.00134 * 298.54322 * 8 6 5 11 11 C 1.54324 * 102.94134 * 206.42598 * 10 8 6 12 12 N 1.47020 * 107.39983 * 22.11770 * 11 10 8 13 13 C 1.34780 * 125.64983 * 181.10309 * 12 11 10 14 14 O 1.21276 * 120.00190 * 180.02562 * 13 12 11 15 15 C 1.50704 * 119.99770 * 0.02562 * 13 12 11 16 16 C 1.50696 * 109.47502 * 179.97438 * 15 13 12 17 17 H 1.08006 * 119.99623 * 0.02562 * 16 15 13 18 18 C 1.37870 * 120.00481 * 180.02562 * 16 15 13 19 19 N 1.31514 * 120.00014 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00087 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46995 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47073 * 119.99797 * 20 18 16 23 23 H 1.48504 * 109.46985 * 239.99680 * 20 18 16 24 24 C 1.47743 * 108.53125 * 1.18235 * 12 11 10 25 25 H 1.08999 * 109.47311 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47615 * 300.00394 * 1 2 3 27 27 H 1.09005 * 109.46808 * 60.00598 * 1 2 3 28 28 H 1.08999 * 109.47615 * 239.99606 * 2 1 3 29 29 H 1.09010 * 109.46828 * 119.99890 * 2 1 3 30 30 H 1.09002 * 109.46475 * 59.99704 * 3 2 1 31 31 H 1.08997 * 109.46735 * 299.99831 * 3 2 1 32 32 H 1.08999 * 109.46793 * 59.99788 * 4 3 2 33 33 H 1.09002 * 109.47424 * 300.00295 * 4 3 2 34 34 H 1.09004 * 110.72010 * 88.06387 * 10 8 6 35 35 H 1.08995 * 110.87585 * 324.86236 * 10 8 6 36 36 H 1.09002 * 109.88322 * 141.61300 * 11 10 8 37 37 H 1.09000 * 109.88025 * 262.62465 * 11 10 8 38 38 H 1.08992 * 109.47408 * 300.00360 * 15 13 12 39 39 H 1.09005 * 109.47188 * 60.00318 * 15 13 12 40 40 H 0.97002 * 120.00227 * 179.97438 * 19 18 16 41 41 H 1.09003 * 110.29227 * 216.94505 * 24 12 11 42 42 H 1.08996 * 110.53057 * 94.67717 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0540 2.8114 0.0000 6 6 5.3848 2.9873 0.0000 7 8 6.1208 2.0291 0.0009 8 6 5.9608 4.3799 -0.0001 9 1 5.6744 4.9194 0.9026 10 6 5.5336 5.1583 -1.2725 11 6 6.6756 6.1807 -1.4518 12 7 7.8519 5.6546 -0.7440 13 6 9.0489 6.2665 -0.6468 14 8 9.9527 5.7371 -0.0355 15 6 9.2641 7.6086 -1.2977 16 6 10.6754 8.0707 -1.0416 17 1 11.3493 7.4539 -0.4654 18 6 11.1064 9.2806 -1.5427 19 7 10.2859 10.0314 -2.2447 20 14 12.8561 9.8530 -1.2258 21 1 13.5713 8.8338 -0.4165 22 1 13.5582 10.0393 -2.5210 23 1 12.8294 11.1412 -0.4874 24 6 7.5011 4.3436 -0.1602 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9330 0.9288 0.8908 34 1 4.5826 5.6664 -1.1127 35 1 5.4735 4.4924 -2.1333 36 1 6.9031 6.3004 -2.5111 37 1 6.3844 7.1403 -1.0247 38 1 9.0989 7.5223 -2.3716 39 1 8.5639 8.3318 -0.8794 40 1 10.5890 10.8829 -2.5970 41 1 7.9807 4.2218 0.8111 42 1 7.7939 3.5358 -0.8309 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143198788.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:58 Heat of formation + Delta-G solvation = -143.203979 kcal Electronic energy + Delta-G solvation = -21790.099645 eV Core-core repulsion = 18348.503983 eV Total energy + Delta-G solvation = -3441.595662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.87947 -39.17393 -37.28997 -36.50494 -35.37154 -32.94517 -31.82145 -29.94419 -29.35140 -28.53158 -25.25062 -23.92986 -22.65717 -22.26087 -21.62685 -20.31912 -18.82486 -17.82849 -17.05189 -16.75623 -16.43486 -16.04313 -15.45292 -15.05794 -14.78294 -14.30724 -14.09404 -13.85561 -13.72758 -13.65959 -13.20286 -12.64158 -12.40628 -12.29280 -12.25646 -12.01953 -11.84501 -11.69634 -11.54444 -11.34395 -11.22924 -11.17012 -10.97079 -10.76915 -10.74215 -10.62831 -10.47557 -9.94998 -9.23709 -8.70571 -8.43779 -8.13420 -6.05862 -4.05248 2.00622 2.32131 3.34164 3.41044 3.48848 3.60566 3.66957 4.21670 4.27127 4.41143 4.47104 4.49498 4.55475 4.73812 4.80414 4.91187 5.03680 5.07775 5.22463 5.27239 5.31682 5.32183 5.32808 5.45620 5.60752 5.64152 5.73172 5.76561 5.81965 5.91281 6.00418 6.04166 6.15078 6.22652 6.79383 7.18852 7.32547 7.55055 7.96722 8.00714 8.37628 9.05844 9.17337 9.59855 11.06508 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.057550 B = 0.002519 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.417526 B =11114.019223 C =11497.931670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.120 4.120 4 C 0.064 3.936 5 O -0.355 6.355 6 C 0.477 3.523 7 O -0.502 6.502 8 C -0.100 4.100 9 H 0.124 0.876 10 C -0.116 4.116 11 C 0.105 3.895 12 N -0.636 5.636 13 C 0.532 3.468 14 O -0.540 6.540 15 C 0.012 3.988 16 C -0.508 4.508 17 H 0.076 0.924 18 C 0.054 3.946 19 N -0.901 5.901 20 Si 0.901 3.099 21 H -0.270 1.270 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.123 3.877 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.261 0.739 41 H 0.082 0.918 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.661 -15.268 2.438 26.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.157 4.157 4 C -0.010 4.010 5 O -0.272 6.272 6 C 0.319 3.681 7 O -0.389 6.389 8 C -0.120 4.120 9 H 0.141 0.859 10 C -0.154 4.154 11 C -0.018 4.018 12 N -0.375 5.375 13 C 0.325 3.675 14 O -0.415 6.415 15 C -0.027 4.027 16 C -0.547 4.547 17 H 0.094 0.906 18 C -0.146 4.146 19 N -0.540 5.540 20 Si 0.729 3.271 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.210 1.210 24 C 0.000 4.000 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.852 -15.651 2.682 26.210 hybrid contribution 0.750 0.214 0.070 0.783 sum -20.102 -15.437 2.752 25.494 Atomic orbital electron populations 1.21748 0.95082 1.01916 1.02145 1.21445 0.96467 0.95566 1.02581 1.21615 0.92330 0.97889 1.03912 1.23116 0.94909 0.80196 1.02730 1.86492 1.24435 1.32255 1.84006 1.23367 0.80505 0.92105 0.72142 1.90693 1.60378 1.42979 1.44852 1.22232 0.97031 0.90144 1.02574 0.85855 1.22650 0.99348 0.97705 0.95692 1.21931 0.84674 0.97029 0.98192 1.48937 1.12692 1.20086 1.55752 1.21878 0.78546 0.88033 0.79068 1.90557 1.41223 1.67043 1.42706 1.19231 0.99681 0.86973 0.96812 1.21232 0.96203 1.03786 1.33482 0.90612 1.25004 0.98069 0.96476 0.95067 1.69966 1.35454 1.12491 1.36132 0.86370 0.84272 0.78492 0.77976 1.19461 1.21002 1.21005 1.21917 0.90004 0.87535 1.00533 0.92460 0.92503 0.92483 0.91582 0.91612 0.90681 0.90621 0.91164 0.91191 0.88766 0.90259 0.90797 0.90691 0.93396 0.93364 0.92956 0.89977 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 37.16 0.37 -0.32 16 2 C -0.12 -0.63 5.93 -26.73 -0.16 -0.79 16 3 C -0.12 -0.74 5.59 -26.73 -0.15 -0.89 16 4 C 0.06 0.55 5.47 37.16 0.20 0.75 16 5 O -0.35 -3.70 10.21 -39.26 -0.40 -4.10 16 6 C 0.48 5.83 7.27 36.01 0.26 6.09 16 7 O -0.50 -7.59 15.55 -18.74 -0.29 -7.89 16 8 C -0.10 -1.17 3.54 -89.62 -0.32 -1.49 16 9 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 10 C -0.12 -1.19 6.40 -24.90 -0.16 -1.35 16 11 C 0.11 1.44 6.48 -3.06 -0.02 1.42 16 12 N -0.64 -11.56 3.34 -170.26 -0.57 -12.13 16 13 C 0.53 12.56 7.85 -10.98 -0.09 12.47 16 14 O -0.54 -14.63 15.73 5.56 0.09 -14.54 16 15 C 0.01 0.31 4.65 -29.04 -0.14 0.18 16 16 C -0.51 -14.91 8.92 -34.44 -0.31 -15.21 16 17 H 0.08 2.33 6.75 -52.48 -0.35 1.97 16 18 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -26.34 13.29 55.43 0.74 -25.61 16 20 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 21 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 C 0.12 1.95 6.00 -2.35 -0.01 1.94 16 25 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.33 8.14 -51.92 -0.42 -0.10 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 33 H 0.07 0.60 8.13 -51.93 -0.42 0.17 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.77 8.04 -51.93 -0.42 0.35 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 41 H 0.08 1.38 8.05 -51.93 -0.42 0.97 16 42 H 0.07 1.22 7.51 -51.93 -0.39 0.83 16 LS Contribution 353.21 15.07 5.32 5.32 Total: -1.00 -34.27 353.21 -7.80 -42.08 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -7.06 Total: -4.64 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -0.61 Total: 4.28 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.17 Total: -37.74 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.60 Total: -26.53 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.27 -7.80 -42.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198788.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.128 kcal (2) G-P(sol) polarization free energy of solvation -34.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds