Wall clock time and date at job start Tue Mar 31 2020 05:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99812 * 2 1 4 4 H 1.48500 * 109.46879 * 239.99457 * 3 2 1 5 5 H 1.48494 * 109.47196 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47151 * 119.99869 * 3 2 1 7 7 C 1.37878 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00489 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47131 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47369 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00012 * 180.02562 * 12 11 10 14 14 O 1.21279 * 120.00300 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99773 * 180.02562 * 13 12 11 16 16 C 1.50699 * 109.47227 * 59.99855 * 15 13 12 17 17 O 1.20821 * 120.00365 * 119.99866 * 16 15 13 18 18 O 1.34231 * 120.00154 * 299.99809 * 16 15 13 19 19 C 1.52997 * 109.47084 * 299.99639 * 15 13 12 20 20 C 1.52999 * 109.47592 * 300.00286 * 19 15 13 21 21 C 1.53006 * 109.46626 * 300.00035 * 20 19 15 22 22 C 1.52997 * 109.47164 * 59.99702 * 21 20 19 23 23 C 1.52996 * 109.47130 * 179.97438 * 15 13 12 24 24 H 0.96999 * 120.00284 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46456 * 59.99911 * 9 7 2 26 26 H 1.09001 * 109.46740 * 300.00380 * 9 7 2 27 27 H 1.09001 * 109.46832 * 60.00314 * 10 9 7 28 28 H 1.08996 * 109.46952 * 300.00294 * 10 9 7 29 29 H 1.09001 * 109.46993 * 59.99869 * 11 10 9 30 30 H 1.09000 * 109.47380 * 300.00763 * 11 10 9 31 31 H 0.96998 * 119.99822 * 359.97438 * 12 11 10 32 32 H 0.96694 * 117.00513 * 179.97438 * 18 16 15 33 33 H 1.09000 * 109.47140 * 179.97438 * 19 15 13 34 34 H 1.09002 * 109.47045 * 60.00033 * 19 15 13 35 35 H 1.08993 * 109.47839 * 180.02562 * 20 19 15 36 36 H 1.09000 * 109.47160 * 59.99666 * 20 19 15 37 37 H 1.09001 * 109.46998 * 179.97438 * 21 20 19 38 38 H 1.09000 * 109.47050 * 299.99699 * 21 20 19 39 39 H 1.09000 * 109.47140 * 60.00051 * 22 21 20 40 40 H 1.09001 * 109.47230 * 179.97438 * 22 21 20 41 41 H 1.08992 * 109.47534 * 300.00299 * 23 15 13 42 42 H 1.08996 * 109.47134 * 179.97438 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2454 -3.6621 0.0027 11 6 1.4804 -4.9871 0.0046 12 7 2.4324 -6.1006 0.0062 13 6 1.9832 -7.3713 0.0074 14 8 0.7908 -7.5929 0.0077 15 6 2.9625 -8.5167 0.0097 16 6 3.8280 -8.4353 1.2407 17 8 3.8325 -9.3437 2.0372 18 8 4.5939 -7.3534 1.4523 19 6 3.8431 -8.4372 -1.2390 20 6 2.9645 -8.5199 -2.4888 21 6 2.1995 -9.8450 -2.4877 22 6 1.3190 -9.9244 -1.2390 23 6 2.1976 -9.8417 0.0114 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8880 26 1 0.6248 -2.5563 0.8920 27 1 2.8720 -3.6035 0.8927 28 1 2.8720 -3.6051 -0.8872 29 1 0.8535 -5.0459 -0.8851 30 1 0.8540 -5.0438 0.8947 31 1 3.3861 -5.9233 0.0056 32 1 5.1316 -7.3466 2.2560 33 1 4.5517 -9.2654 -1.2371 34 1 4.3880 -7.4932 -1.2398 35 1 3.5918 -8.4637 -3.3784 36 1 2.2561 -7.6914 -2.4905 37 1 1.5732 -9.9037 -3.3779 38 1 2.9079 -10.6734 -2.4861 39 1 0.6106 -9.0960 -1.2406 40 1 0.7737 -10.8682 -1.2384 41 1 1.5705 -9.8981 0.9010 42 1 2.9059 -10.6701 0.0125 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180438664.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:56 Heat of formation + Delta-G solvation = -163.828097 kcal Electronic energy + Delta-G solvation = -23102.973390 eV Core-core repulsion = 19660.483399 eV Total energy + Delta-G solvation = -3442.489991 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.57387 -39.57274 -37.46190 -36.40978 -35.45480 -33.45438 -32.13871 -31.13748 -30.68477 -26.86827 -24.96544 -23.46228 -23.02966 -21.85916 -21.04624 -20.67242 -19.19282 -18.35650 -17.42425 -16.79033 -16.42286 -15.74245 -15.50985 -15.16218 -14.71626 -14.49623 -14.36914 -14.22846 -13.73116 -13.56856 -12.96401 -12.67414 -12.47815 -12.34289 -12.21265 -11.87848 -11.84341 -11.78851 -11.31337 -11.14237 -10.92361 -10.84442 -10.74284 -10.63028 -10.47393 -10.39401 -9.89149 -9.76926 -9.36030 -9.14341 -8.82334 -8.38599 -6.03299 -4.06580 1.75858 2.32941 2.92420 3.24514 3.30858 3.35896 3.37830 4.08590 4.32688 4.42760 4.57398 4.70134 4.90406 4.98097 5.06364 5.18655 5.23958 5.32480 5.34871 5.53561 5.63850 5.68858 5.73354 5.76907 5.89631 5.94767 6.05100 6.06907 6.12253 6.18734 6.30294 6.51758 6.56422 6.79325 6.97098 7.53726 7.60384 7.61238 7.73693 7.95057 8.23998 8.36426 8.99831 9.57700 11.07936 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.024917 B = 0.003499 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.459743 B = 8000.076715 C = 8408.866385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.115 3.885 12 N -0.714 5.714 13 C 0.523 3.477 14 O -0.524 6.524 15 C -0.069 4.069 16 C 0.492 3.508 17 O -0.502 6.502 18 O -0.511 6.511 19 C -0.104 4.104 20 C -0.122 4.122 21 C -0.121 4.121 22 C -0.134 4.134 23 C -0.082 4.082 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.404 0.596 32 H 0.416 0.584 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.340 -19.673 -2.650 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C -0.007 4.007 12 N -0.365 5.365 13 C 0.306 3.694 14 O -0.400 6.400 15 C -0.073 4.073 16 C 0.332 3.668 17 O -0.389 6.389 18 O -0.323 6.323 19 C -0.142 4.142 20 C -0.160 4.160 21 C -0.158 4.158 22 C -0.171 4.171 23 C -0.119 4.119 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.240 0.760 32 H 0.276 0.724 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.076 -19.935 -2.774 21.687 hybrid contribution 1.352 1.089 0.665 1.859 sum 9.428 -18.846 -2.109 21.178 Atomic orbital electron populations 1.69950 1.06067 1.26826 1.50434 1.25021 0.94845 0.99282 0.95242 0.86644 0.79568 0.83103 0.78593 1.20235 1.21271 1.20247 1.21162 0.92959 0.90931 1.51117 0.92681 1.19026 0.93832 0.90840 0.97645 1.21886 0.99765 0.93182 1.00996 1.21708 0.91831 0.85049 1.02110 1.46257 1.11437 1.05440 1.73388 1.19721 0.88779 0.83567 0.77317 1.90660 1.15997 1.84117 1.49261 1.20974 0.94943 0.98712 0.92697 1.22968 0.77817 0.79259 0.86710 1.90725 1.63700 1.38741 1.45754 1.84469 1.55568 1.43392 1.48898 1.21612 0.97097 1.03878 0.91636 1.21584 0.98822 0.98857 0.96732 1.21582 0.98743 0.97026 0.98484 1.21841 0.98625 1.03957 0.92680 1.21280 0.98307 0.92070 1.00282 0.92854 0.96260 0.96308 0.92652 0.92643 0.91522 0.91678 0.76032 0.72448 0.90209 0.89982 0.90847 0.91198 0.91611 0.92086 0.88574 0.91561 0.90398 0.90726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.29 5.27 -26.73 -0.14 -2.43 16 11 C 0.12 1.96 5.67 -4.04 -0.02 1.94 16 12 N -0.71 -9.95 5.21 -60.30 -0.31 -10.27 16 13 C 0.52 7.44 4.95 -10.98 -0.05 7.39 16 14 O -0.52 -9.08 13.66 5.56 0.08 -9.00 16 15 C -0.07 -0.78 0.57 -156.81 -0.09 -0.87 16 16 C 0.49 5.58 6.91 36.01 0.25 5.82 16 17 O -0.50 -6.90 16.74 -18.75 -0.31 -7.22 16 18 O -0.51 -4.36 11.78 -39.26 -0.46 -4.82 16 19 C -0.10 -0.92 4.57 -26.73 -0.12 -1.04 16 20 C -0.12 -1.10 5.70 -26.73 -0.15 -1.26 16 21 C -0.12 -1.06 5.92 -26.73 -0.16 -1.21 16 22 C -0.13 -1.42 5.63 -26.71 -0.15 -1.57 16 23 C -0.08 -0.92 3.66 -26.71 -0.10 -1.02 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.40 4.83 6.56 -40.82 -0.27 4.56 16 32 H 0.42 1.87 9.10 45.56 0.41 2.28 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.66 7.53 -51.93 -0.39 0.27 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.77 7.22 -51.93 -0.37 0.40 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.10 1.28 5.51 -51.93 -0.29 1.00 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 42 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 337.64 15.07 5.09 5.09 Total: -1.00 -32.86 337.64 -7.44 -40.30 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.94 Total: 2.51 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -1.29 Total: -6.98 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.42 Total: -36.10 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.70 Total: -21.05 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.86 -7.44 -40.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180438664.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.530 kcal (2) G-P(sol) polarization free energy of solvation -32.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds