Wall clock time and date at job start Tue Mar 31 2020 06:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47123 * 2 1 4 4 C 1.53005 * 109.47279 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47245 * 180.02562 * 4 3 2 6 6 C 1.37098 * 119.99960 * 270.00517 * 5 4 3 7 7 H 1.07996 * 120.00420 * 142.57842 * 6 5 4 8 8 C 1.38952 * 119.99995 * 322.56711 * 6 5 4 9 9 N 1.31413 * 119.99889 * 341.16179 * 8 6 5 10 10 Si 1.86802 * 120.00052 * 161.14763 * 8 6 5 11 11 H 1.48500 * 109.46769 * 90.00423 * 10 8 6 12 12 H 1.48494 * 109.47280 * 210.00567 * 10 8 6 13 13 H 1.48494 * 109.46991 * 330.00698 * 10 8 6 14 14 C 1.34774 * 119.99959 * 90.00252 * 5 4 3 15 15 O 1.21292 * 120.00420 * 5.30494 * 14 5 4 16 16 C 1.50699 * 119.99844 * 185.30792 * 14 5 4 17 17 C 1.53858 * 113.60403 * 179.71886 * 16 14 5 18 18 C 1.53377 * 86.97211 * 89.42080 * 17 16 14 19 19 C 1.53391 * 87.47720 * 25.21709 * 18 17 16 20 20 O 1.43333 * 114.59477 * 269.27336 * 18 17 16 21 21 C 1.44892 * 104.66909 * 205.50046 * 20 18 17 22 22 C 1.54952 * 101.79193 * 35.66377 * 21 20 18 23 23 O 1.42945 * 114.83193 * 141.45843 * 18 17 16 24 24 H 1.08999 * 109.47262 * 299.99960 * 1 2 3 25 25 H 1.09005 * 109.47126 * 59.99818 * 1 2 3 26 26 H 1.08995 * 109.47409 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47262 * 240.00040 * 2 1 3 28 28 H 1.09005 * 109.47126 * 120.00182 * 2 1 3 29 29 H 1.09007 * 109.47163 * 60.00219 * 3 2 1 30 30 H 1.08999 * 109.47666 * 300.00232 * 3 2 1 31 31 H 1.09007 * 109.46573 * 60.00190 * 4 3 2 32 32 H 1.08996 * 109.46785 * 300.00595 * 4 3 2 33 33 H 0.97002 * 119.99646 * 185.32037 * 9 8 6 34 34 H 1.09002 * 112.90502 * 48.50148 * 16 14 5 35 35 H 1.08994 * 113.63141 * 334.89879 * 17 16 14 36 36 H 1.08996 * 113.63028 * 203.94149 * 17 16 14 37 37 H 1.09000 * 113.63219 * 89.30524 * 19 18 17 38 38 H 1.08995 * 113.63034 * 220.26197 * 19 18 17 39 39 H 1.08996 * 110.96267 * 277.54354 * 21 20 18 40 40 H 1.08998 * 110.96378 * 153.78811 * 21 20 18 41 41 H 1.09001 * 110.68655 * 206.28508 * 22 21 20 42 42 H 1.09003 * 110.68956 * 83.08868 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4426 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.2873 3.4704 -1.1858 7 1 4.0559 4.5209 -1.2818 8 6 4.8172 2.7742 -2.2653 9 7 5.4368 1.6319 -2.0701 10 14 4.6484 3.4619 -3.9939 11 1 5.8157 4.3281 -4.2981 12 1 4.5948 2.3431 -4.9687 13 1 3.4007 4.2614 -4.0888 14 6 4.2825 3.4587 1.1687 15 8 4.1729 2.8579 2.2167 16 6 4.6694 4.9152 1.1721 17 6 4.8827 5.4927 2.5821 18 6 6.3471 5.0557 2.4512 19 6 6.1699 5.1546 0.9307 20 8 6.6209 3.7345 2.9345 21 6 8.0248 3.7582 3.2921 22 6 8.1878 5.1986 3.8397 23 8 7.2977 5.9687 3.0045 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9564 0.8901 30 1 1.6767 1.9564 -0.8899 31 1 3.9337 0.9286 -0.8892 32 1 3.9330 0.9288 0.8908 33 1 5.8736 1.1843 -2.8116 34 1 4.0231 5.5272 0.5430 35 1 4.3357 4.9599 3.3598 36 1 4.7524 6.5735 2.6359 37 1 6.3956 6.1419 0.5278 38 1 6.6578 4.3499 0.3808 39 1 8.6532 3.6009 2.4156 40 1 8.2431 3.0205 4.0643 41 1 9.2164 5.5403 3.7242 42 1 7.8782 5.2511 4.8835 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181510607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:14 Heat of formation + Delta-G solvation = -101.393650 kcal Electronic energy + Delta-G solvation = -23902.300942 eV Core-core repulsion = 20462.518311 eV Total energy + Delta-G solvation = -3439.782630 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.59795 -38.52786 -36.07264 -34.73902 -34.58925 -33.83990 -31.38728 -29.16616 -28.36135 -25.31442 -24.95077 -24.58414 -22.93971 -22.28750 -20.51096 -19.81668 -18.58851 -17.10115 -16.45887 -16.22308 -15.72651 -15.24640 -14.70245 -14.66129 -14.50291 -14.17637 -13.67807 -13.45310 -13.10359 -12.87032 -12.54728 -12.29703 -12.16806 -11.97158 -11.71718 -11.52915 -11.45141 -11.17339 -11.13342 -10.91125 -10.55432 -10.45974 -10.35866 -10.29206 -10.17579 -10.05312 -9.88010 -9.63800 -9.04469 -8.96606 -8.25815 -7.35105 -6.28783 -3.98831 3.12389 3.22465 3.25619 3.77154 3.96482 4.15488 4.20036 4.72787 4.78854 4.98682 5.02507 5.18878 5.22915 5.38673 5.47154 5.52670 5.56414 5.63963 5.71412 5.79598 5.94261 6.08784 6.11865 6.12995 6.26547 6.28364 6.39129 6.45326 6.50124 6.61678 6.65573 6.70123 6.78615 6.81446 6.89857 7.22809 7.43035 7.59682 7.61787 8.07364 8.46720 9.15831 9.64490 10.07957 10.72558 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014903 B = 0.006313 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.349539 B = 4434.045028 C = 5574.354614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.126 4.126 4 C 0.112 3.888 5 N -0.441 5.441 6 C -0.333 4.333 7 H 0.086 0.914 8 C 0.043 3.957 9 N -0.864 5.864 10 Si 0.910 3.090 11 H -0.278 1.278 12 H -0.283 1.283 13 H -0.269 1.269 14 C 0.492 3.508 15 O -0.585 6.585 16 C -0.103 4.103 17 C -0.125 4.125 18 C 0.231 3.769 19 C -0.130 4.130 20 O -0.321 6.321 21 C 0.010 3.990 22 C 0.020 3.980 23 O -0.377 6.377 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.052 0.948 33 H 0.268 0.732 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.245 3.733 4.827 6.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.165 4.165 4 C -0.011 4.011 5 N -0.159 5.159 6 C -0.461 4.461 7 H 0.104 0.896 8 C -0.162 4.162 9 N -0.501 5.501 10 Si 0.737 3.263 11 H -0.204 1.204 12 H -0.208 1.208 13 H -0.194 1.194 14 C 0.280 3.720 15 O -0.469 6.469 16 C -0.125 4.125 17 C -0.163 4.163 18 C 0.154 3.846 19 C -0.168 4.168 20 O -0.240 6.240 21 C -0.067 4.067 22 C -0.056 4.056 23 O -0.298 6.298 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.125 0.875 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.121 0.879 41 H 0.111 0.889 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.071 3.260 5.169 6.204 hybrid contribution 0.228 0.291 -1.084 1.145 sum 1.299 3.551 4.085 5.566 Atomic orbital electron populations 1.21757 0.96724 1.00612 1.01429 1.21429 0.94871 0.97871 1.01571 1.21906 0.98187 0.95305 1.01107 1.21429 0.90843 0.85195 1.03643 1.43314 1.56269 1.12010 1.04307 1.19352 1.42875 0.95739 0.88115 0.89596 1.25328 0.94902 0.96014 0.99933 1.69817 1.30997 1.16951 1.32371 0.86196 0.78956 0.78595 0.82563 1.20359 1.20823 1.19406 1.19705 0.80057 0.87968 0.84252 1.90530 1.56499 1.67846 1.32068 1.21875 0.97538 0.96372 0.96680 1.23357 0.93623 1.00711 0.98622 1.24499 0.89853 0.76897 0.93354 1.23505 0.95677 1.03204 0.94435 1.89503 1.23301 1.27939 1.83276 1.24383 0.84715 0.97252 1.00365 1.24144 0.95055 0.90956 0.95473 1.88813 1.44049 1.32981 1.63925 0.93133 0.93064 0.93479 0.92259 0.92470 0.93288 0.92332 0.87533 0.92932 0.92142 0.88696 0.89240 0.88660 0.88848 0.89251 0.90957 0.87866 0.88882 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.12 -2.07 5.93 -26.73 -0.16 -2.23 16 3 C -0.13 -2.63 5.54 -26.73 -0.15 -2.78 16 4 C 0.11 2.74 5.04 -4.04 -0.02 2.72 16 5 N -0.44 -11.19 2.52 -114.81 -0.29 -11.48 16 6 C -0.33 -8.37 8.58 -14.93 -0.13 -8.49 16 7 H 0.09 2.07 6.82 -52.49 -0.36 1.71 16 8 C 0.04 1.09 5.03 -17.47 -0.09 1.00 16 9 N -0.86 -22.80 11.29 55.50 0.63 -22.18 16 10 Si 0.91 19.41 29.60 -169.99 -5.03 14.38 16 11 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 14 C 0.49 12.22 6.59 -10.99 -0.07 12.15 16 15 O -0.59 -15.83 14.19 -11.59 -0.16 -15.99 16 16 C -0.10 -2.14 3.19 -90.88 -0.29 -2.43 16 17 C -0.13 -2.33 7.22 -26.09 -0.19 -2.52 16 18 C 0.23 4.43 1.84 -26.33 -0.05 4.38 16 19 C -0.13 -2.55 7.25 -26.09 -0.19 -2.74 16 20 O -0.32 -6.70 9.62 -65.47 -0.63 -7.33 16 21 C 0.01 0.15 7.96 38.19 0.30 0.45 16 22 C 0.02 0.27 8.08 38.19 0.31 0.58 16 23 O -0.38 -6.42 11.30 -59.03 -0.67 -7.08 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.11 2.76 5.41 -51.93 -0.28 2.47 16 32 H 0.05 1.35 7.35 -51.93 -0.38 0.97 16 33 H 0.27 6.71 8.32 -40.82 -0.34 6.37 16 34 H 0.09 1.83 7.37 -51.93 -0.38 1.45 16 35 H 0.09 1.80 7.43 -51.93 -0.39 1.41 16 36 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 38 H 0.09 1.99 8.09 -51.93 -0.42 1.57 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 338.63 15.07 5.10 5.10 Total: -1.00 -30.37 338.63 -8.24 -38.61 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -6.84 Total: 7.64 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -0.35 Total: -1.68 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.34 Total: -33.65 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -1.46 Total: -30.40 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.37 -8.24 -38.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181510607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.782 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds