Wall clock time and date at job start Tue Mar 31 2020 06:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47123 * 2 1 4 4 C 1.53005 * 109.47279 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47245 * 180.02562 * 4 3 2 6 6 C 1.37098 * 119.99960 * 270.00517 * 5 4 3 7 7 H 1.07996 * 120.00420 * 142.57842 * 6 5 4 8 8 C 1.38952 * 119.99995 * 322.56711 * 6 5 4 9 9 N 1.31413 * 119.99889 * 341.16179 * 8 6 5 10 10 Si 1.86802 * 120.00052 * 161.14763 * 8 6 5 11 11 H 1.48500 * 109.46769 * 90.00423 * 10 8 6 12 12 H 1.48494 * 109.47280 * 210.00567 * 10 8 6 13 13 H 1.48494 * 109.46991 * 330.00698 * 10 8 6 14 14 C 1.34774 * 119.99959 * 90.00252 * 5 4 3 15 15 O 1.21292 * 120.00420 * 5.30494 * 14 5 4 16 16 C 1.50699 * 119.99844 * 185.30792 * 14 5 4 17 17 C 1.53858 * 113.60403 * 179.71886 * 16 14 5 18 18 C 1.53377 * 86.97211 * 89.42080 * 17 16 14 19 19 C 1.53391 * 87.47720 * 25.21709 * 18 17 16 20 20 O 1.43333 * 114.59477 * 269.27336 * 18 17 16 21 21 C 1.44892 * 104.66909 * 205.50046 * 20 18 17 22 22 C 1.54952 * 101.79193 * 35.66377 * 21 20 18 23 23 O 1.42945 * 114.83193 * 141.45843 * 18 17 16 24 24 H 1.08999 * 109.47262 * 299.99960 * 1 2 3 25 25 H 1.09005 * 109.47126 * 59.99818 * 1 2 3 26 26 H 1.08995 * 109.47409 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47262 * 240.00040 * 2 1 3 28 28 H 1.09005 * 109.47126 * 120.00182 * 2 1 3 29 29 H 1.09007 * 109.47163 * 60.00219 * 3 2 1 30 30 H 1.08999 * 109.47666 * 300.00232 * 3 2 1 31 31 H 1.09007 * 109.46573 * 60.00190 * 4 3 2 32 32 H 1.08996 * 109.46785 * 300.00595 * 4 3 2 33 33 H 0.97002 * 119.99646 * 185.32037 * 9 8 6 34 34 H 1.09002 * 112.90502 * 48.50148 * 16 14 5 35 35 H 1.08994 * 113.63141 * 334.89879 * 17 16 14 36 36 H 1.08996 * 113.63028 * 203.94149 * 17 16 14 37 37 H 1.09000 * 113.63219 * 89.30524 * 19 18 17 38 38 H 1.08995 * 113.63034 * 220.26197 * 19 18 17 39 39 H 1.08996 * 110.96267 * 277.54354 * 21 20 18 40 40 H 1.08998 * 110.96378 * 153.78811 * 21 20 18 41 41 H 1.09001 * 110.68655 * 206.28508 * 22 21 20 42 42 H 1.09003 * 110.68956 * 83.08868 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4426 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.2873 3.4704 -1.1858 7 1 4.0559 4.5209 -1.2818 8 6 4.8172 2.7742 -2.2653 9 7 5.4368 1.6319 -2.0701 10 14 4.6484 3.4619 -3.9939 11 1 5.8157 4.3281 -4.2981 12 1 4.5948 2.3431 -4.9687 13 1 3.4007 4.2614 -4.0888 14 6 4.2825 3.4587 1.1687 15 8 4.1729 2.8579 2.2167 16 6 4.6694 4.9152 1.1721 17 6 4.8827 5.4927 2.5821 18 6 6.3471 5.0557 2.4512 19 6 6.1699 5.1546 0.9307 20 8 6.6209 3.7345 2.9345 21 6 8.0248 3.7582 3.2921 22 6 8.1878 5.1986 3.8397 23 8 7.2977 5.9687 3.0045 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9564 0.8901 30 1 1.6767 1.9564 -0.8899 31 1 3.9337 0.9286 -0.8892 32 1 3.9330 0.9288 0.8908 33 1 5.8736 1.1843 -2.8116 34 1 4.0231 5.5272 0.5430 35 1 4.3357 4.9599 3.3598 36 1 4.7524 6.5735 2.6359 37 1 6.3956 6.1419 0.5278 38 1 6.6578 4.3499 0.3808 39 1 8.6532 3.6009 2.4156 40 1 8.2431 3.0205 4.0643 41 1 9.2164 5.5403 3.7242 42 1 7.8782 5.2511 4.8835 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181510607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:14 Heat of formation + Delta-G solvation = -118.908861 kcal Electronic energy + Delta-G solvation = -23903.060458 eV Core-core repulsion = 20462.518311 eV Total energy + Delta-G solvation = -3440.542147 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.06374 -40.28736 -37.70395 -36.53968 -35.96981 -35.49292 -33.32767 -30.52032 -29.87728 -26.86783 -26.82865 -26.19896 -24.16700 -23.84231 -22.05230 -21.54947 -20.41030 -18.52075 -18.20162 -17.72878 -17.38704 -16.65761 -16.44080 -16.25193 -16.08228 -15.88541 -15.32586 -14.82754 -14.73378 -14.35861 -13.96496 -13.76730 -13.63826 -13.59699 -13.22894 -13.12399 -12.91941 -12.81802 -12.72181 -12.62672 -12.14414 -12.03518 -11.97916 -11.83784 -11.79238 -11.66863 -11.41076 -11.12319 -10.96512 -10.40417 -10.20384 -9.33522 -8.21792 -5.98467 1.42886 1.49224 1.59606 2.08643 2.35350 2.52349 2.82942 2.96225 3.10907 3.53820 3.71589 3.75902 3.90515 4.04773 4.07995 4.14125 4.21168 4.29102 4.34974 4.50348 4.59960 4.64723 4.68695 4.70661 4.84076 4.85178 4.89743 4.95790 5.00154 5.07090 5.09159 5.11647 5.18738 5.22760 5.37617 5.45227 5.50272 5.64086 6.13678 6.25505 6.50492 7.20046 7.69819 8.13925 8.80662 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014903 B = 0.006313 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.349539 B = 4434.045028 C = 5574.354614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C -0.112 4.112 4 C 0.114 3.886 5 N -0.453 5.453 6 C -0.344 4.344 7 H 0.097 0.903 8 C 0.002 3.998 9 N -0.899 5.899 10 Si 0.979 3.021 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.259 1.259 14 C 0.479 3.521 15 O -0.617 6.617 16 C -0.109 4.109 17 C -0.114 4.114 18 C 0.231 3.769 19 C -0.123 4.123 20 O -0.366 6.366 21 C -0.001 4.001 22 C 0.022 3.978 23 O -0.381 6.381 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.025 0.975 33 H 0.269 0.731 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.094 5.340 4.392 7.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.151 4.151 4 C -0.010 4.010 5 N -0.171 5.171 6 C -0.472 4.472 7 H 0.115 0.885 8 C -0.200 4.200 9 N -0.537 5.537 10 Si 0.803 3.197 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.183 1.183 14 C 0.269 3.731 15 O -0.503 6.503 16 C -0.130 4.130 17 C -0.152 4.152 18 C 0.154 3.846 19 C -0.161 4.161 20 O -0.286 6.286 21 C -0.077 4.077 22 C -0.054 4.054 23 O -0.303 6.303 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.129 0.871 35 H 0.088 0.912 36 H 0.149 0.851 37 H 0.141 0.859 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.924 4.879 4.740 6.865 hybrid contribution 0.375 -0.271 -0.877 0.992 sum 1.299 4.607 3.863 6.151 Atomic orbital electron populations 1.21705 0.93982 1.02355 1.01831 1.21409 0.97221 0.95225 1.01545 1.21759 0.95416 0.97669 1.00273 1.21369 0.93215 0.85006 1.01386 1.43599 1.56383 1.12212 1.04906 1.19673 1.43026 0.96342 0.88150 0.88548 1.26160 0.94160 0.96200 1.03500 1.69946 1.31901 1.18361 1.33480 0.85145 0.79293 0.77855 0.77450 1.19703 1.21025 1.18346 1.20441 0.79342 0.89761 0.83591 1.90492 1.57748 1.69095 1.33012 1.21855 0.98542 0.93766 0.98857 1.23369 0.93118 1.02381 0.96322 1.24386 0.90561 0.76858 0.92828 1.23487 0.94305 1.03347 0.94976 1.89466 1.26348 1.29190 1.83618 1.24693 0.82322 0.99520 1.01150 1.24411 0.96270 0.89082 0.95595 1.88776 1.44193 1.32819 1.64492 0.92897 0.92512 0.91084 0.92178 0.92662 0.94374 0.92595 0.89072 0.95612 0.92088 0.87150 0.91200 0.85087 0.85932 0.92798 0.91107 0.85734 0.85376 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 9.91 71.98 0.71 -3.16 16 2 C -0.12 -4.01 5.93 30.60 0.18 -3.82 16 3 C -0.11 -4.79 5.54 30.60 0.17 -4.62 16 4 C 0.11 5.81 5.04 86.38 0.44 6.24 16 5 N -0.45 -23.71 2.52 -635.55 -1.60 -25.31 16 6 C -0.34 -17.46 8.58 84.04 0.72 -16.74 16 7 H 0.10 4.59 6.82 -2.91 -0.02 4.57 16 8 C 0.00 0.09 5.03 84.93 0.43 0.52 16 9 N -0.90 -48.53 11.29 21.66 0.24 -48.29 16 10 Si 0.98 39.42 29.60 68.60 2.03 41.45 16 11 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 12 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 13 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 14 C 0.48 24.52 6.59 87.66 0.58 25.09 16 15 O -0.62 -34.80 14.19 13.32 0.19 -34.61 16 16 C -0.11 -4.50 3.19 -10.97 -0.03 -4.54 16 17 C -0.11 -4.14 7.22 31.01 0.22 -3.92 16 18 C 0.23 8.70 1.84 30.85 0.06 8.75 16 19 C -0.12 -4.77 7.25 31.01 0.22 -4.54 16 20 O -0.37 -15.51 9.62 -120.06 -1.16 -16.66 16 21 C 0.00 -0.03 7.96 72.65 0.58 0.55 16 22 C 0.02 0.54 8.08 72.65 0.59 1.12 16 23 O -0.38 -12.17 11.30 -126.23 -1.43 -13.59 16 24 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 26 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 28 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.09 4.93 5.41 -2.38 -0.01 4.92 16 32 H 0.03 1.40 7.35 -2.39 -0.02 1.38 16 33 H 0.27 13.74 8.32 -92.71 -0.77 12.97 16 34 H 0.11 4.14 7.37 -2.39 -0.02 4.12 16 35 H 0.07 2.82 7.43 -2.39 -0.02 2.80 16 36 H 0.13 3.74 8.14 -2.39 -0.02 3.72 16 37 H 0.12 3.95 8.14 -2.39 -0.02 3.93 16 38 H 0.05 2.46 8.09 -2.39 -0.02 2.44 16 39 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -67.82 338.63 4.13 -63.69 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: 0.99 Total: 32.37 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 4.86 Total: 0.95 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -1.36 Total: -73.60 kcal Atomic # 8 Polarization: -62.47 SS G_CDS: -2.39 Total: -64.86 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Total: -67.82 4.13 -63.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181510607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.222 kcal (2) G-P(sol) polarization free energy of solvation -67.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds