Wall clock time and date at job start Tue Mar 31 2020 06:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47519 * 2 1 4 4 C 1.52994 * 109.47193 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47019 * 179.97438 * 4 3 2 6 6 C 1.37094 * 120.00068 * 269.99732 * 5 4 3 7 7 H 1.08004 * 119.99857 * 143.81378 * 6 5 4 8 8 C 1.38955 * 120.00281 * 323.81761 * 6 5 4 9 9 N 1.31412 * 120.00043 * 156.61686 * 8 6 5 10 10 Si 1.86806 * 119.99701 * 336.61556 * 8 6 5 11 11 H 1.48499 * 109.46674 * 95.23050 * 10 8 6 12 12 H 1.48502 * 109.46713 * 215.22555 * 10 8 6 13 13 H 1.48498 * 109.47092 * 335.22956 * 10 8 6 14 14 C 1.34780 * 119.99878 * 90.00321 * 5 4 3 15 15 O 1.21285 * 120.00003 * 4.71984 * 14 5 4 16 16 C 1.50703 * 119.99673 * 184.99486 * 14 5 4 17 17 H 1.08998 * 110.61651 * 330.01271 * 16 14 5 18 18 C 1.54533 * 110.69122 * 206.75674 * 16 14 5 19 19 C 1.51787 * 103.52914 * 225.10970 * 18 16 14 20 20 O 1.20824 * 126.42846 * 210.64885 * 19 18 16 21 21 O 1.34529 * 107.14078 * 30.62503 * 19 18 16 22 22 C 1.45592 * 109.63560 * 327.17806 * 21 19 18 23 23 C 1.53000 * 110.07392 * 262.03889 * 22 21 19 24 24 C 1.52997 * 110.07454 * 140.49208 * 22 21 19 25 25 H 1.08996 * 109.47540 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47174 * 300.00000 * 1 2 3 27 27 H 1.08999 * 109.46886 * 59.99359 * 1 2 3 28 28 H 1.09003 * 109.46970 * 239.99486 * 2 1 3 29 29 H 1.09007 * 109.47086 * 120.00409 * 2 1 3 30 30 H 1.09002 * 109.46898 * 59.99831 * 3 2 1 31 31 H 1.08993 * 109.47018 * 299.99802 * 3 2 1 32 32 H 1.09002 * 109.47228 * 60.00166 * 4 3 2 33 33 H 1.09002 * 109.47664 * 300.00049 * 4 3 2 34 34 H 0.96997 * 119.99906 * 179.97438 * 9 8 6 35 35 H 1.09005 * 110.61106 * 343.61636 * 18 16 14 36 36 H 1.08995 * 110.61653 * 106.59409 * 18 16 14 37 37 H 1.09003 * 109.46901 * 176.94222 * 23 22 21 38 38 H 1.09003 * 109.47100 * 296.94488 * 23 22 21 39 39 H 1.09002 * 109.47497 * 56.94461 * 23 22 21 40 40 H 1.08998 * 109.47540 * 302.84043 * 24 22 21 41 41 H 1.09003 * 109.46969 * 62.83974 * 24 22 21 42 42 H 1.08998 * 109.46941 * 182.83877 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4423 0.0006 5 7 4.0584 2.8235 0.0000 6 6 4.2875 3.4691 -1.1875 7 1 4.0748 4.5241 -1.2784 8 6 4.7932 2.7661 -2.2742 9 7 4.5937 3.2106 -3.4947 10 14 5.7565 1.1893 -2.0001 11 1 4.8451 0.0239 -2.1281 12 1 6.8367 1.0866 -3.0141 13 1 6.3535 1.2040 -0.6405 14 6 4.2826 3.4595 1.1670 15 8 4.1626 2.8625 2.2159 16 6 4.6764 4.9142 1.1687 17 1 5.2320 5.1625 0.2644 18 6 5.5000 5.2554 2.4310 19 6 4.8897 6.5595 2.9114 20 8 5.4626 7.4463 3.4988 21 8 3.5912 6.5427 2.5600 22 6 3.4324 5.8155 1.3087 23 6 3.3599 6.7964 0.1368 24 6 2.1658 4.9586 1.3565 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9562 -0.8899 32 1 3.9337 0.9284 -0.8891 33 1 3.9330 0.9286 0.8908 34 1 4.9470 2.7201 -4.2533 35 1 5.3856 4.4773 3.1857 36 1 6.5510 5.3940 2.1777 37 1 3.2957 6.2406 -0.7987 38 1 2.4781 7.4279 0.2455 39 1 4.2542 7.4195 0.1286 40 1 2.2178 4.2802 2.2081 41 1 1.2938 5.6045 1.4593 42 1 2.0833 4.3806 0.4361 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182749040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:18 Heat of formation + Delta-G solvation = -122.268542 kcal Electronic energy + Delta-G solvation = -24296.144038 eV Core-core repulsion = 20855.456204 eV Total energy + Delta-G solvation = -3440.687834 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.13626 -38.97081 -37.33867 -35.74730 -34.20168 -33.36492 -32.07181 -31.29195 -28.83355 -27.25249 -25.42195 -24.74030 -23.24500 -21.59151 -20.78258 -20.32210 -18.97970 -17.20643 -16.79674 -16.45624 -15.89344 -15.49837 -15.41245 -14.91666 -14.49259 -14.25296 -13.69429 -13.54616 -13.24124 -13.00410 -12.94660 -12.68864 -12.42091 -12.22417 -12.02169 -11.89239 -11.71791 -11.50627 -11.40990 -11.24643 -10.97274 -10.77180 -10.69515 -10.60043 -10.49110 -10.30678 -10.11587 -9.91798 -9.85309 -9.31768 -8.76834 -7.99125 -6.67741 -4.25607 2.16420 2.91313 3.10494 3.18066 3.37767 3.55728 3.95072 4.03153 4.36280 4.66037 4.76824 4.98883 5.05818 5.27242 5.29171 5.33185 5.43964 5.54853 5.68732 5.81553 5.86996 5.95199 5.99363 6.03508 6.06540 6.08913 6.12229 6.13590 6.17470 6.24855 6.30697 6.37832 6.42154 6.52833 6.67325 6.80006 7.07234 7.17633 7.69120 7.86106 8.04103 8.74194 9.13756 9.46511 10.41664 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015487 B = 0.006979 C = 0.005861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.537668 B = 4011.359611 C = 4776.404560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.126 4.126 4 C 0.101 3.899 5 N -0.455 5.455 6 C -0.357 4.357 7 H 0.110 0.890 8 C 0.074 3.926 9 N -0.848 5.848 10 Si 0.872 3.128 11 H -0.273 1.273 12 H -0.287 1.287 13 H -0.261 1.261 14 C 0.493 3.507 15 O -0.592 6.592 16 C -0.124 4.124 17 H 0.127 0.873 18 C -0.177 4.177 19 C 0.493 3.507 20 O -0.463 6.463 21 O -0.350 6.350 22 C 0.130 3.870 23 C -0.161 4.161 24 C -0.156 4.156 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.277 0.723 35 H 0.129 0.871 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.793 -1.148 2.971 4.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.165 4.165 4 C -0.022 4.022 5 N -0.174 5.174 6 C -0.484 4.484 7 H 0.127 0.873 8 C -0.135 4.135 9 N -0.482 5.482 10 Si 0.700 3.300 11 H -0.200 1.200 12 H -0.214 1.214 13 H -0.185 1.185 14 C 0.282 3.718 15 O -0.477 6.477 16 C -0.145 4.145 17 H 0.145 0.855 18 C -0.216 4.216 19 C 0.334 3.666 20 O -0.347 6.347 21 O -0.268 6.268 22 C 0.093 3.907 23 C -0.219 4.219 24 C -0.213 4.213 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.147 0.853 36 H 0.124 0.876 37 H 0.114 0.886 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.741 -0.953 3.604 5.282 hybrid contribution 0.669 -0.899 -0.307 1.162 sum -3.073 -1.852 3.298 4.873 Atomic orbital electron populations 1.21737 0.96083 1.00958 1.01767 1.21478 0.95652 0.97401 1.01645 1.21858 0.95810 0.96174 1.02610 1.21664 0.94122 0.85010 1.01410 1.43711 1.56376 1.11810 1.05516 1.19104 1.45683 0.96988 0.86582 0.87300 1.25286 0.95537 0.98054 0.94667 1.69767 1.40031 1.40298 0.98140 0.87028 0.80483 0.83308 0.79231 1.19984 1.21431 1.18525 1.19583 0.80285 0.87991 0.83921 1.90551 1.57383 1.67997 1.31805 1.22493 0.96651 0.95219 1.00170 0.85547 1.23070 1.01641 0.97196 0.99646 1.23324 0.81036 0.86834 0.75398 1.90655 1.63709 1.41254 1.39093 1.87078 1.27265 1.72294 1.40201 1.22687 0.96530 0.90664 0.80804 1.22315 1.02738 0.99187 0.97611 1.22147 0.94769 0.99484 1.04873 0.93265 0.92894 0.92733 0.92265 0.92282 0.91971 0.91002 0.91637 0.91145 0.91255 0.85279 0.87568 0.88597 0.91421 0.92075 0.90687 0.91825 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 37.16 0.37 -1.46 16 2 C -0.12 -1.79 5.93 -26.73 -0.16 -1.95 16 3 C -0.13 -2.17 5.54 -26.74 -0.15 -2.31 16 4 C 0.10 2.00 4.27 -4.04 -0.02 1.99 16 5 N -0.46 -9.57 1.75 -114.81 -0.20 -9.77 16 6 C -0.36 -8.02 8.71 -14.93 -0.13 -8.15 16 7 H 0.11 2.46 5.35 -52.48 -0.28 2.18 16 8 C 0.07 1.74 5.29 -17.47 -0.09 1.65 16 9 N -0.85 -21.11 13.96 55.50 0.77 -20.34 16 10 Si 0.87 18.86 25.06 -169.99 -4.26 14.60 16 11 H -0.27 -5.70 6.65 56.52 0.38 -5.33 16 12 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 14 C 0.49 10.05 4.63 -10.98 -0.05 10.00 16 15 O -0.59 -13.13 14.50 5.55 0.08 -13.05 16 16 C -0.12 -2.20 2.37 -90.31 -0.21 -2.41 16 17 H 0.13 2.23 6.26 -51.93 -0.33 1.91 16 18 C -0.18 -2.93 6.53 -26.54 -0.17 -3.11 16 19 C 0.49 8.78 8.57 36.54 0.31 9.10 16 20 O -0.46 -9.13 18.00 -18.28 -0.33 -9.46 16 21 O -0.35 -6.23 10.44 -39.61 -0.41 -6.64 16 22 C 0.13 2.15 1.28 -89.96 -0.11 2.04 16 23 C -0.16 -2.36 8.70 37.16 0.32 -2.04 16 24 C -0.16 -2.53 7.76 37.16 0.29 -2.24 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.07 1.35 3.16 -51.93 -0.16 1.19 16 33 H 0.07 1.41 7.36 -51.93 -0.38 1.03 16 34 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 35 H 0.13 2.24 6.82 -51.93 -0.35 1.89 16 36 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 37 H 0.10 1.46 6.44 -51.93 -0.33 1.13 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.07 1.33 6.97 -51.93 -0.36 0.97 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.09 1.61 7.21 -51.93 -0.37 1.24 16 LS Contribution 331.51 15.07 5.00 5.00 Total: -1.00 -26.49 331.51 -5.55 -32.04 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -6.39 Total: 6.53 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 0.19 Total: 1.10 kcal Atomic # 7 Polarization: -30.68 SS G_CDS: 0.57 Total: -30.11 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.66 Total: -29.15 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.26 Total: 14.60 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -26.49 -5.55 -32.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182749040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.232 kcal (2) G-P(sol) polarization free energy of solvation -26.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds