Wall clock time and date at job start Tue Mar 31 2020 05:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34236 * 116.99557 * 2 1 4 4 O 1.20821 * 120.00016 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99811 * 180.27417 * 3 2 1 6 6 C 1.53005 * 109.46900 * 59.72521 * 5 3 2 7 7 C 1.52998 * 109.47243 * 299.72727 * 5 3 2 8 8 C 1.53001 * 109.47450 * 179.97438 * 7 5 3 9 9 C 1.53002 * 109.47066 * 59.99947 * 8 7 5 10 10 C 1.50697 * 109.47149 * 59.99933 * 9 8 7 11 11 O 1.21294 * 120.00322 * 243.03827 * 10 9 8 12 12 N 1.34779 * 119.99860 * 63.03676 * 10 9 8 13 13 C 1.46500 * 119.99870 * 184.44201 * 12 10 9 14 14 C 1.37103 * 119.99954 * 4.44536 * 12 10 9 15 15 H 1.08001 * 119.99614 * 353.84539 * 14 12 10 16 16 C 1.38948 * 119.99717 * 173.84399 * 14 12 10 17 17 N 1.31408 * 120.00654 * 5.63674 * 16 14 12 18 18 Si 1.86803 * 119.99542 * 185.63243 * 16 14 12 19 19 H 1.48505 * 109.46921 * 90.00174 * 18 16 14 20 20 H 1.48496 * 109.47125 * 209.99826 * 18 16 14 21 21 H 1.48500 * 109.47265 * 330.00491 * 18 16 14 22 22 C 1.53005 * 109.46881 * 300.00097 * 9 8 7 23 23 C 1.53001 * 109.47053 * 60.00319 * 22 9 8 24 24 H 1.08994 * 109.47028 * 299.99513 * 1 2 3 25 25 H 1.09004 * 109.46920 * 60.00177 * 1 2 3 26 26 H 1.09001 * 109.46903 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46626 * 60.00553 * 6 5 3 28 28 H 1.08999 * 109.46457 * 180.02562 * 6 5 3 29 29 H 1.08994 * 109.47336 * 299.99550 * 6 5 3 30 30 H 1.09005 * 109.47498 * 300.00308 * 7 5 3 31 31 H 1.09002 * 109.47360 * 59.99831 * 7 5 3 32 32 H 1.08996 * 109.46753 * 300.00125 * 8 7 5 33 33 H 1.08998 * 109.47391 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.47300 * 180.02562 * 9 8 7 35 35 H 1.08994 * 109.47609 * 1.85306 * 13 12 10 36 36 H 1.09000 * 109.46909 * 121.85865 * 13 12 10 37 37 H 1.09008 * 109.46666 * 241.85196 * 13 12 10 38 38 H 0.96997 * 120.00241 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.47494 * 300.00161 * 22 9 8 40 40 H 1.09003 * 109.46775 * 179.97438 * 22 9 8 41 41 H 1.08998 * 109.47095 * 180.02562 * 23 22 9 42 42 H 1.08997 * 109.47553 * 59.99322 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0062 6 6 4.1083 0.5782 -1.2559 7 6 4.1184 0.5847 1.2425 8 6 5.6463 0.6643 1.2359 9 6 6.0806 2.1314 1.2301 10 6 5.5471 2.8181 2.4609 11 8 4.7560 3.7310 2.3513 12 7 5.9491 2.4179 3.6835 13 6 5.3583 3.0187 4.8819 14 6 6.9110 1.4485 3.8056 15 1 7.2750 0.9354 2.9277 16 6 7.4174 1.1263 5.0588 17 7 6.8982 1.6694 6.1369 18 14 8.8363 -0.0791 5.2109 19 1 10.1226 0.6611 5.1558 20 1 8.7358 -0.8011 6.5046 21 1 8.7787 -1.0552 4.0933 22 6 5.5285 2.8217 -0.0188 23 6 4.0006 2.7421 -0.0121 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.7150 1.0701 -2.1455 28 1 5.1968 0.6349 -1.2601 29 1 3.7994 -0.4670 -1.2519 30 1 3.7322 1.0811 2.1329 31 1 3.8094 -0.4606 1.2465 32 1 6.0321 0.1677 0.3457 33 1 6.0396 0.1729 2.1258 34 1 7.1691 2.1881 1.2249 35 1 4.5954 3.7397 4.5885 36 1 4.9051 2.2387 5.4936 37 1 6.1352 3.5247 5.4552 38 1 7.2515 1.4442 7.0117 39 1 5.9142 2.3250 -0.9091 40 1 5.8375 3.8670 -0.0227 41 1 3.6073 3.2335 -0.9020 42 1 3.6147 3.2387 0.8782 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187184898.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:10 Heat of formation + Delta-G solvation = -117.227094 kcal Electronic energy + Delta-G solvation = -24330.928058 eV Core-core repulsion = 20890.458838 eV Total energy + Delta-G solvation = -3440.469220 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.82930 -39.36520 -37.12083 -36.13032 -34.79028 -32.19289 -31.40211 -30.21326 -27.74410 -26.99993 -26.21763 -24.75526 -23.16901 -22.23896 -20.91966 -19.25797 -18.44404 -17.15232 -16.89240 -16.32072 -16.19593 -15.66507 -14.87164 -14.45299 -14.19148 -14.00998 -13.90517 -13.40259 -13.14335 -12.83103 -12.54602 -12.37396 -12.21815 -12.00265 -11.75048 -11.57909 -11.46343 -11.37578 -11.12913 -11.00840 -10.73383 -10.67582 -10.52100 -10.40772 -10.23771 -10.09094 -10.03177 -9.68144 -9.51867 -9.07140 -8.08558 -7.85693 -6.28010 -3.87292 2.44621 2.88358 3.08361 3.17042 3.18973 3.94195 4.04478 4.77524 4.83166 4.99476 5.09435 5.09833 5.11752 5.19338 5.35869 5.48592 5.54178 5.63534 5.72176 5.80115 5.92907 5.97780 5.99476 6.07305 6.17236 6.37296 6.42607 6.49389 6.51808 6.65656 6.70437 6.76108 6.86535 6.94527 7.18869 7.30526 7.40202 7.53337 7.79431 7.97384 8.41214 9.08152 9.58786 9.98966 10.65019 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021554 B = 0.005326 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.746392 B = 5255.864570 C = 5331.569911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.470 3.530 4 O -0.505 6.505 5 C -0.046 4.046 6 C -0.142 4.142 7 C -0.101 4.101 8 C -0.117 4.117 9 C -0.093 4.093 10 C 0.454 3.546 11 O -0.607 6.607 12 N -0.445 5.445 13 C 0.123 3.877 14 C -0.330 4.330 15 H 0.108 0.892 16 C 0.032 3.968 17 N -0.875 5.875 18 Si 0.923 3.077 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.269 1.269 22 C -0.091 4.091 23 C -0.111 4.111 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.098 0.902 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.032 0.968 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.266 0.734 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.213 -5.981 -10.719 12.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.313 3.687 4 O -0.392 6.392 5 C -0.047 4.047 6 C -0.199 4.199 7 C -0.139 4.139 8 C -0.154 4.154 9 C -0.114 4.114 10 C 0.243 3.757 11 O -0.496 6.496 12 N -0.162 5.162 13 C -0.020 4.020 14 C -0.458 4.458 15 H 0.125 0.875 16 C -0.172 4.172 17 N -0.515 5.515 18 Si 0.750 3.250 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.194 1.194 22 C -0.129 4.129 23 C -0.148 4.148 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.116 0.884 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.796 -5.265 -10.495 12.684 hybrid contribution 0.527 -0.647 0.360 0.909 sum -4.269 -5.913 -10.135 12.486 Atomic orbital electron populations 1.23208 0.77215 1.03263 1.02338 1.86530 1.22740 1.34009 1.84290 1.24058 0.92166 0.80962 0.71507 1.90636 1.67127 1.36427 1.44972 1.20633 0.85416 0.99971 0.98668 1.21960 1.02573 1.00228 0.95186 1.21520 0.96917 0.99866 0.95601 1.21731 0.94389 0.95810 1.03490 1.21033 1.00880 0.95436 0.94040 1.19875 0.85323 0.85936 0.84563 1.90434 1.39843 1.33119 1.86167 1.43719 1.34214 1.33858 1.04448 1.21517 0.97019 0.97175 0.86287 1.19893 1.15581 1.15538 0.94770 0.87502 1.25322 0.98456 0.98219 0.95158 1.70237 1.40192 1.42749 0.98306 0.85985 0.81104 0.79918 0.78023 1.20320 1.20877 1.19367 1.21308 0.94921 1.00653 0.96030 1.21778 0.96207 0.91763 1.05029 0.92027 0.92256 0.88406 0.92695 0.90214 0.91773 0.91154 0.91286 0.91877 0.88480 0.89684 0.94889 0.92091 0.91779 0.92330 0.92375 0.91508 0.92660 0.87017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 101.05 1.07 1.44 16 2 O -0.36 -5.25 10.37 -39.27 -0.41 -5.65 16 3 C 0.47 7.98 6.55 36.01 0.24 8.21 16 4 O -0.51 -9.91 15.73 -18.75 -0.29 -10.21 16 5 C -0.05 -0.73 0.71 -155.66 -0.11 -0.84 16 6 C -0.14 -1.77 7.71 37.16 0.29 -1.49 16 7 C -0.10 -1.72 4.44 -26.73 -0.12 -1.84 16 8 C -0.12 -1.94 4.78 -26.73 -0.13 -2.07 16 9 C -0.09 -1.73 2.17 -91.77 -0.20 -1.93 16 10 C 0.45 10.65 5.52 -10.99 -0.06 10.59 16 11 O -0.61 -15.68 12.89 5.55 0.07 -15.61 16 12 N -0.45 -11.11 3.03 -122.19 -0.37 -11.48 16 13 C 0.12 3.12 8.87 59.85 0.53 3.65 16 14 C -0.33 -8.00 8.25 -14.93 -0.12 -8.13 16 15 H 0.11 2.37 4.76 -52.49 -0.25 2.12 16 16 C 0.03 0.79 5.45 -17.47 -0.10 0.69 16 17 N -0.88 -22.52 9.45 55.50 0.52 -21.99 16 18 Si 0.92 18.91 29.56 -169.99 -5.02 13.88 16 19 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 20 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 22 C -0.09 -1.52 4.83 -26.73 -0.13 -1.65 16 23 C -0.11 -1.98 3.73 -26.73 -0.10 -2.08 16 24 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 25 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 26 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.92 4.80 -51.93 -0.25 0.67 16 29 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 30 H 0.07 1.43 7.22 -51.93 -0.37 1.06 16 31 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 32 H 0.06 0.86 6.43 -51.93 -0.33 0.53 16 33 H 0.10 1.78 5.31 -51.93 -0.28 1.51 16 34 H 0.09 1.54 7.66 -51.93 -0.40 1.15 16 35 H 0.03 0.82 6.92 -51.93 -0.36 0.46 16 36 H 0.06 1.58 7.15 -51.93 -0.37 1.21 16 37 H 0.06 1.68 6.95 -51.92 -0.36 1.32 16 38 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 39 H 0.06 0.79 6.43 -51.93 -0.33 0.46 16 40 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 41 H 0.05 0.94 8.10 -51.93 -0.42 0.52 16 42 H 0.11 2.48 5.36 -51.93 -0.28 2.20 16 LS Contribution 318.22 15.07 4.80 4.80 Total: -1.00 -29.50 318.22 -5.74 -35.25 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.09 Total: 6.45 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 1.06 Total: 4.57 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.15 Total: -33.47 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.63 Total: -31.47 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.88 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.50 -5.74 -35.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187184898.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.982 kcal (2) G-P(sol) polarization free energy of solvation -29.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds