Wall clock time and date at job start Tue Mar 31 2020 06:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 O 1.45206 * 109.47226 * 239.99648 * 2 1 3 6 6 C 1.34644 * 116.99182 * 60.00595 * 5 2 1 7 7 O 1.21507 * 120.00513 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99419 * 180.02562 * 6 5 2 9 9 C 1.47007 * 121.37804 * 359.97438 * 8 6 5 10 10 C 1.50322 * 109.16643 * 222.95470 * 9 8 6 11 11 C 1.29458 * 123.65050 * 349.01927 * 10 9 8 12 12 C 1.49962 * 124.61168 * 0.86111 * 11 10 9 13 13 H 1.08998 * 109.31518 * 101.09900 * 12 11 10 14 14 O 1.42899 * 109.31528 * 220.71706 * 12 11 10 15 15 C 1.42902 * 114.00274 * 269.99670 * 14 12 11 16 16 C 1.50698 * 109.47349 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00056 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99763 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99964 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99598 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46861 * 89.99731 * 20 18 16 22 22 H 1.48498 * 109.46978 * 209.99264 * 20 18 16 23 23 H 1.48490 * 109.47182 * 329.99639 * 20 18 16 24 24 C 1.47345 * 121.37121 * 179.71631 * 8 6 5 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 34 34 H 1.09004 * 109.51771 * 342.85723 * 9 8 6 35 35 H 1.08999 * 109.52229 * 102.98126 * 9 8 6 36 36 H 1.08001 * 118.17670 * 169.00317 * 10 9 8 37 37 H 1.08001 * 117.69403 * 180.84134 * 11 10 9 38 38 H 1.09000 * 109.47240 * 300.00479 * 15 14 12 39 39 H 1.09001 * 109.46621 * 60.00122 * 15 14 12 40 40 H 0.97003 * 119.99383 * 180.02562 * 19 18 16 41 41 H 1.08998 * 109.77557 * 237.79957 * 24 8 6 42 42 H 1.08998 * 109.77746 * 358.61580 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 2.0140 -0.6846 -1.1856 6 6 1.6523 -0.1728 -2.3772 7 8 0.9510 0.8183 -2.4253 8 7 2.0672 -0.7606 -3.5169 9 6 2.9158 -1.9608 -3.4941 10 6 3.9996 -1.8186 -4.5260 11 6 4.0140 -0.8901 -5.4279 12 6 2.9733 0.1809 -5.5646 13 1 3.3506 1.1076 -5.1324 14 8 2.6867 0.3875 -6.9492 15 6 3.5091 1.3766 -7.5718 16 6 3.1218 1.5118 -9.0218 17 1 2.3268 0.9035 -9.4274 18 6 3.7824 2.4120 -9.8308 19 7 4.7500 3.1530 -9.3367 20 14 3.3027 2.5790 -11.6284 21 1 2.2447 3.6121 -11.7645 22 1 4.4915 2.9805 -12.4226 23 1 2.7908 1.2774 -12.1271 24 6 1.6844 -0.2299 -4.8371 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 -1.7489 1.2492 32 1 3.1300 -0.7217 1.2490 33 1 1.6767 -0.2075 2.1393 34 1 3.3648 -2.0707 -2.5070 35 1 2.3106 -2.8391 -3.7188 36 1 4.8117 -2.5305 -4.5141 37 1 4.8336 -0.8863 -6.1313 38 1 3.3707 2.3334 -7.0684 39 1 4.5546 1.0767 -7.5010 40 1 5.2145 3.7865 -9.9058 41 1 1.1655 -1.0000 -5.4078 42 1 1.0363 0.6375 -4.7121 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205620832.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:41 Heat of formation + Delta-G solvation = -107.634378 kcal Electronic energy + Delta-G solvation = -22838.046135 eV Core-core repulsion = 19397.992887 eV Total energy + Delta-G solvation = -3440.053249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.89216 -38.82486 -36.93172 -35.93437 -34.15806 -32.81255 -32.36224 -30.04669 -27.59465 -27.51231 -27.07556 -25.85695 -23.29444 -22.36001 -21.82097 -19.86581 -18.50598 -17.43312 -16.77147 -16.59674 -16.10021 -15.80148 -15.36532 -15.03614 -14.56090 -14.37666 -14.34633 -13.77515 -13.60189 -13.20825 -12.93350 -12.71979 -12.50984 -12.37290 -12.19739 -12.05173 -12.01599 -11.75727 -11.49505 -11.41390 -11.05717 -10.99415 -10.86349 -10.61891 -10.46809 -10.13857 -10.04097 -9.23392 -9.04453 -8.87563 -8.69383 -8.21973 -6.14010 -4.16273 2.05471 2.37139 2.84461 3.29299 3.34361 3.39435 3.74391 4.33354 4.55177 4.59291 4.73915 4.79681 4.93542 5.06587 5.22563 5.24518 5.27991 5.36075 5.38841 5.44695 5.48819 5.50289 5.51263 5.59535 5.70767 5.79282 5.87857 6.07156 6.14327 6.16584 6.21198 6.40619 6.42587 6.66762 6.97917 7.04294 7.36738 7.41262 7.75472 8.09253 8.33204 8.47080 8.95751 9.48559 10.97362 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.030917 B = 0.003305 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.427079 B = 8469.661220 C = 8813.862015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.185 4.185 4 C -0.139 4.139 5 O -0.363 6.363 6 C 0.657 3.343 7 O -0.566 6.566 8 N -0.594 5.594 9 C 0.146 3.854 10 C -0.190 4.190 11 C -0.138 4.138 12 C 0.101 3.899 13 H 0.068 0.932 14 O -0.379 6.379 15 C 0.195 3.805 16 C -0.517 4.517 17 H 0.068 0.932 18 C 0.057 3.943 19 N -0.898 5.898 20 Si 0.909 3.091 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.271 1.271 24 C 0.134 3.866 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.008 0.992 39 H 0.007 0.993 40 H 0.265 0.735 41 H 0.086 0.914 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.946 -9.739 20.090 22.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.242 4.242 4 C -0.197 4.197 5 O -0.278 6.278 6 C 0.412 3.588 7 O -0.455 6.455 8 N -0.336 5.336 9 C 0.024 3.976 10 C -0.209 4.209 11 C -0.157 4.157 12 C 0.041 3.959 13 H 0.086 0.914 14 O -0.298 6.298 15 C 0.121 3.879 16 C -0.555 4.555 17 H 0.086 0.914 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.736 3.264 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.196 1.196 24 C 0.013 3.987 25 H 0.107 0.893 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.026 0.974 39 H 0.025 0.975 40 H 0.074 0.926 41 H 0.105 0.895 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.180 -9.369 20.003 22.481 hybrid contribution 0.319 0.328 -0.853 0.968 sum -3.862 -9.041 19.150 21.526 Atomic orbital electron populations 1.22515 0.94041 1.02825 1.04652 1.22054 0.94357 0.92282 0.81474 1.22522 1.01629 0.95358 1.04662 1.21849 1.02243 1.01011 0.94558 1.86282 1.71590 1.56343 1.13618 1.17831 0.78853 0.81247 0.80860 1.90899 1.41466 1.26578 1.86575 1.46992 1.52829 1.29996 1.03743 1.20529 0.90670 0.86693 0.99670 1.22213 0.99842 1.00539 0.98313 1.22745 0.99670 0.95953 0.97287 1.21024 0.92516 0.96095 0.86257 0.91390 1.87929 1.61464 1.61944 1.18492 1.20322 0.89537 0.85202 0.92881 1.21037 1.19259 1.21856 0.93319 0.91415 1.24953 0.94837 0.95249 0.99417 1.69964 1.22970 1.24217 1.36499 0.86319 0.77964 0.78616 0.83509 1.20399 1.21077 1.19590 1.21773 0.96542 1.01113 0.79239 0.89256 0.91253 0.92259 0.91246 0.92151 0.89212 0.91548 0.91491 0.90236 0.88725 0.90359 0.86442 0.86921 0.97428 0.97500 0.92588 0.89531 0.87812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 8.37 37.16 0.31 -1.56 16 2 C 0.14 1.43 1.13 -90.62 -0.10 1.33 16 3 C -0.18 -2.01 8.37 37.15 0.31 -1.70 16 4 C -0.14 -1.04 8.85 37.16 0.33 -0.71 16 5 O -0.36 -4.69 8.68 -40.33 -0.35 -5.04 16 6 C 0.66 9.98 7.77 54.06 0.42 10.40 16 7 O -0.57 -9.76 11.37 -19.28 -0.22 -9.98 16 8 N -0.59 -8.70 2.96 -179.62 -0.53 -9.23 16 9 C 0.15 1.74 6.61 -5.10 -0.03 1.71 16 10 C -0.19 -2.50 9.92 -35.78 -0.35 -2.86 16 11 C -0.14 -2.30 9.36 -35.95 -0.34 -2.63 16 12 C 0.10 1.92 3.04 -27.93 -0.09 1.83 16 13 H 0.07 1.36 7.77 -51.93 -0.40 0.96 16 14 O -0.38 -8.97 9.94 -35.23 -0.35 -9.32 16 15 C 0.19 5.27 5.48 36.00 0.20 5.47 16 16 C -0.52 -15.06 9.43 -34.44 -0.32 -15.39 16 17 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 20 Si 0.91 21.74 29.54 -169.99 -5.02 16.72 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 C 0.13 2.21 6.18 -3.27 -0.02 2.19 16 25 H 0.09 1.15 5.88 -51.93 -0.31 0.85 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 1.24 5.88 -51.93 -0.31 0.93 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 1.00 7.16 -51.93 -0.37 0.62 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 37 H 0.11 1.97 8.06 -52.49 -0.42 1.55 16 38 H 0.01 0.22 8.08 -51.93 -0.42 -0.20 16 39 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.10 1.80 7.07 -51.93 -0.37 1.43 16 LS Contribution 342.56 15.07 5.16 5.16 Total: -1.00 -31.85 342.56 -7.15 -39.00 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.79 Total: -0.91 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 0.21 Total: -0.39 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.20 Total: -35.24 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.92 Total: -24.34 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.85 -7.15 -39.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205620832.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.634 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds