Wall clock time and date at job start Tue Mar 31 2020 06:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47092 * 2 1 4 4 C 1.53001 * 109.46697 * 240.00161 * 2 1 3 5 5 O 1.45198 * 109.47353 * 120.00058 * 2 1 3 6 6 C 1.34636 * 116.99744 * 59.99780 * 5 2 1 7 7 O 1.21514 * 120.00421 * 0.02562 * 6 5 2 8 8 N 1.34781 * 119.99763 * 180.02562 * 6 5 2 9 9 C 1.48816 * 127.18584 * 358.86406 * 8 6 5 10 10 C 1.56047 * 105.35371 * 179.09735 * 9 8 6 11 11 H 1.08995 * 117.11066 * 201.09755 * 10 9 8 12 12 C 1.57144 * 99.44608 * 327.80093 * 10 9 8 13 13 C 1.49140 * 126.65637 * 180.02562 * 8 6 5 14 14 H 1.09002 * 115.71062 * 340.76208 * 13 8 6 15 15 C 1.55918 * 105.35785 * 109.96082 * 13 8 6 16 16 C 1.54669 * 104.48244 * 70.96079 * 15 13 8 17 17 H 1.08998 * 110.49624 * 117.75152 * 16 15 13 18 18 O 1.42899 * 110.60754 * 240.36665 * 16 15 13 19 19 C 1.34925 * 116.99899 * 264.77564 * 18 16 15 20 20 H 1.07995 * 120.00118 * 0.02562 * 19 18 16 21 21 C 1.38644 * 119.99764 * 180.02562 * 19 18 16 22 22 N 1.31579 * 120.00086 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99772 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47240 * 60.00010 * 23 21 19 25 25 H 1.48495 * 109.46829 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47065 * 299.99872 * 23 21 19 27 27 H 1.09007 * 109.46915 * 299.99966 * 1 2 3 28 28 H 1.09004 * 109.47408 * 59.99784 * 1 2 3 29 29 H 1.08996 * 109.47410 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46836 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46928 * 299.99616 * 3 2 1 32 32 H 1.08994 * 109.47218 * 60.00509 * 3 2 1 33 33 H 1.09000 * 109.47514 * 299.99640 * 4 2 1 34 34 H 1.08994 * 109.47463 * 60.00266 * 4 2 1 35 35 H 1.09000 * 109.47001 * 180.02562 * 4 2 1 36 36 H 1.09001 * 109.71335 * 60.38978 * 9 8 6 37 37 H 1.09007 * 110.84197 * 298.38752 * 9 8 6 38 38 H 1.08996 * 112.19951 * 294.76277 * 12 10 9 39 39 H 1.08993 * 112.19824 * 167.77497 * 12 10 9 40 40 H 1.09004 * 110.43291 * 189.70714 * 15 13 8 41 41 H 1.08996 * 110.43649 * 312.20881 * 15 13 8 42 42 H 0.97000 * 119.99805 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5035 8 7 2.0673 -2.6654 2.4171 9 6 2.9419 -2.1775 3.5178 10 6 3.0763 -3.3803 4.5028 11 1 3.3680 -3.1525 5.5280 12 6 1.6644 -4.0394 4.2991 13 6 1.7580 -4.0897 2.7334 14 1 0.8965 -4.5126 2.2165 15 6 3.1030 -4.8558 2.5462 16 6 3.9788 -4.3959 3.7352 17 1 4.2298 -5.2425 4.3742 18 8 5.1668 -3.7548 3.2665 19 6 6.2739 -4.5187 3.1602 20 1 6.2352 -5.5653 3.4240 21 6 7.4611 -3.9602 2.7123 22 7 7.5083 -2.6850 2.3913 23 14 8.9937 -5.0179 2.5644 24 1 8.7384 -6.1289 1.6128 25 1 10.1208 -4.1893 2.0663 26 1 9.3399 -5.5765 3.8961 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6768 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1299 -0.7217 -1.2491 36 1 2.4683 -1.3318 4.0163 37 1 3.9218 -1.8902 3.1362 38 1 0.8555 -3.3949 4.6430 39 1 1.6069 -5.0344 4.7403 40 1 2.9371 -5.9322 2.5898 41 1 3.5698 -4.5798 1.6007 42 1 8.3389 -2.2943 2.0775 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224378439.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:55 Heat of formation + Delta-G solvation = -94.228747 kcal Electronic energy + Delta-G solvation = -23901.490529 eV Core-core repulsion = 20462.018592 eV Total energy + Delta-G solvation = -3439.471937 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.64502 -39.50022 -36.50943 -35.51952 -33.86496 -32.02685 -31.22416 -29.26330 -27.29775 -27.22151 -26.98642 -24.53449 -24.12864 -21.94836 -20.12006 -19.56551 -18.53599 -17.59392 -17.48650 -16.35397 -15.91157 -15.58644 -15.08718 -14.64823 -14.25624 -14.06697 -13.60361 -13.50160 -13.03848 -12.42541 -12.38460 -12.27455 -12.14269 -12.02621 -11.75048 -11.67209 -11.58694 -11.46320 -11.23865 -11.14855 -11.04616 -10.90249 -10.78741 -10.66225 -10.35259 -10.11443 -9.97421 -9.66984 -9.50873 -9.05265 -8.18050 -7.98353 -5.95762 -3.59093 2.44051 3.26916 3.30771 3.33204 3.35949 4.17299 4.28464 4.74551 4.85691 4.88231 4.90349 5.00680 5.04734 5.34824 5.41246 5.54039 5.54518 5.60945 5.64825 5.72690 5.76684 5.81730 5.90231 5.95991 5.97536 6.00246 6.04602 6.09968 6.20442 6.33701 6.36063 6.39734 6.51386 6.63239 6.70269 6.75872 6.86432 6.97764 7.45886 7.97091 8.42260 8.74459 9.47885 10.15136 11.24654 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017124 B = 0.005467 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.694889 B = 5120.094403 C = 6115.753402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.358 6.358 6 C 0.673 3.327 7 O -0.584 6.584 8 N -0.598 5.598 9 C 0.117 3.883 10 C -0.105 4.105 11 H 0.115 0.885 12 C -0.137 4.137 13 C 0.147 3.853 14 H 0.113 0.887 15 C -0.158 4.158 16 C 0.095 3.905 17 H 0.049 0.951 18 O -0.277 6.277 19 C -0.362 4.362 20 H 0.061 0.939 21 C 0.025 3.975 22 N -0.887 5.887 23 Si 0.922 3.078 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.278 1.278 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.107 3.373 -0.020 13.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.272 6.272 6 C 0.428 3.572 7 O -0.476 6.476 8 N -0.338 5.338 9 C -0.004 4.004 10 C -0.124 4.124 11 H 0.133 0.867 12 C -0.175 4.175 13 C 0.046 3.954 14 H 0.131 0.869 15 C -0.197 4.197 16 C 0.035 3.965 17 H 0.067 0.933 18 O -0.192 6.192 19 C -0.441 4.441 20 H 0.079 0.921 21 C -0.174 4.174 22 N -0.530 5.530 23 Si 0.750 3.250 24 H -0.205 1.205 25 H -0.209 1.209 26 H -0.204 1.204 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.120 0.880 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.215 3.679 -0.524 13.727 hybrid contribution 0.860 -0.758 -0.184 1.162 sum -12.354 2.920 -0.709 12.715 Atomic orbital electron populations 1.22506 0.94471 1.04866 1.01953 1.21978 0.93899 0.91581 0.82685 1.21842 1.02673 0.92650 1.02573 1.22504 1.02055 1.03351 0.96126 1.86358 1.71392 1.23780 1.45672 1.17433 0.78543 0.80235 0.80955 1.90832 1.43015 1.70783 1.42928 1.48026 1.51545 1.12630 1.21625 1.22576 0.95559 0.95568 0.86727 1.23990 0.94278 0.95665 0.98445 0.86711 1.23855 0.97354 1.01416 0.94910 1.23539 0.97962 0.79330 0.94577 0.86946 1.23651 0.95087 0.98743 1.02214 1.22826 0.87825 0.93340 0.92466 0.93291 1.85659 1.14802 1.34926 1.83784 1.20808 0.87198 0.92177 1.43885 0.92095 1.24914 0.97610 0.96126 0.98715 1.69996 1.26437 1.10821 1.45711 0.86090 0.81601 0.79091 0.78266 1.20483 1.20933 1.20410 0.92478 0.91528 0.89437 0.91191 0.90509 0.91684 0.89430 0.91614 0.91857 0.92470 0.88028 0.90680 0.89568 0.91370 0.90091 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.37 8.37 37.16 0.31 -2.06 16 2 C 0.14 2.00 1.13 -90.62 -0.10 1.90 16 3 C -0.14 -1.66 8.85 37.16 0.33 -1.33 16 4 C -0.18 -2.74 8.37 37.16 0.31 -2.43 16 5 O -0.36 -6.57 9.58 -40.31 -0.39 -6.95 16 6 C 0.67 13.08 7.99 54.06 0.43 13.51 16 7 O -0.58 -11.77 12.21 -19.28 -0.24 -12.00 16 8 N -0.60 -11.09 2.99 -161.96 -0.48 -11.57 16 9 C 0.12 2.16 6.26 -1.13 -0.01 2.15 16 10 C -0.11 -1.74 5.20 -85.11 -0.44 -2.18 16 11 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 12 C -0.14 -1.84 6.61 -22.35 -0.15 -1.99 16 13 C 0.15 2.40 5.03 -62.78 -0.32 2.08 16 14 H 0.11 1.70 8.05 -51.93 -0.42 1.29 16 15 C -0.16 -2.96 6.19 -24.29 -0.15 -3.11 16 16 C 0.10 1.94 3.11 -24.22 -0.08 1.87 16 17 H 0.05 0.97 7.81 -51.93 -0.41 0.56 16 18 O -0.28 -7.45 7.97 -16.50 -0.13 -7.58 16 19 C -0.36 -10.25 9.82 30.88 0.30 -9.94 16 20 H 0.06 1.63 7.63 -52.49 -0.40 1.23 16 21 C 0.02 0.72 5.49 -17.51 -0.10 0.62 16 22 N -0.89 -27.30 13.67 55.48 0.76 -26.54 16 23 Si 0.92 21.87 29.55 -169.99 -5.02 16.84 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.09 1.34 5.88 -51.93 -0.31 1.04 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.51 5.88 -51.93 -0.31 1.21 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.10 2.32 6.84 -51.92 -0.36 1.97 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.08 1.82 8.00 -51.93 -0.42 1.41 16 42 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 335.81 15.07 5.06 5.06 Total: -1.00 -33.13 335.81 -6.90 -40.03 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.81 Total: 3.62 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 0.35 Total: -0.90 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.28 Total: -38.11 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.75 Total: -26.54 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.13 -6.90 -40.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378439.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.194 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds