Wall clock time and date at job start Tue Mar 31 2020 06:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47092 * 2 1 4 4 C 1.53001 * 109.46697 * 240.00161 * 2 1 3 5 5 O 1.45198 * 109.47353 * 120.00058 * 2 1 3 6 6 C 1.34636 * 116.99744 * 59.99780 * 5 2 1 7 7 O 1.21514 * 120.00421 * 0.02562 * 6 5 2 8 8 N 1.34781 * 119.99763 * 180.02562 * 6 5 2 9 9 C 1.48816 * 127.18584 * 358.86406 * 8 6 5 10 10 C 1.56047 * 105.35371 * 179.09735 * 9 8 6 11 11 H 1.08995 * 117.11066 * 201.09755 * 10 9 8 12 12 C 1.57144 * 99.44608 * 327.80093 * 10 9 8 13 13 C 1.49140 * 126.65637 * 180.02562 * 8 6 5 14 14 H 1.09002 * 115.71062 * 340.76208 * 13 8 6 15 15 C 1.55918 * 105.35785 * 109.96082 * 13 8 6 16 16 C 1.54669 * 104.48244 * 70.96079 * 15 13 8 17 17 H 1.08998 * 110.49624 * 117.75152 * 16 15 13 18 18 O 1.42899 * 110.60754 * 240.36665 * 16 15 13 19 19 C 1.34925 * 116.99899 * 264.77564 * 18 16 15 20 20 H 1.07995 * 120.00118 * 0.02562 * 19 18 16 21 21 C 1.38644 * 119.99764 * 180.02562 * 19 18 16 22 22 N 1.31579 * 120.00086 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99772 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47240 * 60.00010 * 23 21 19 25 25 H 1.48495 * 109.46829 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47065 * 299.99872 * 23 21 19 27 27 H 1.09007 * 109.46915 * 299.99966 * 1 2 3 28 28 H 1.09004 * 109.47408 * 59.99784 * 1 2 3 29 29 H 1.08996 * 109.47410 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46836 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46928 * 299.99616 * 3 2 1 32 32 H 1.08994 * 109.47218 * 60.00509 * 3 2 1 33 33 H 1.09000 * 109.47514 * 299.99640 * 4 2 1 34 34 H 1.08994 * 109.47463 * 60.00266 * 4 2 1 35 35 H 1.09000 * 109.47001 * 180.02562 * 4 2 1 36 36 H 1.09001 * 109.71335 * 60.38978 * 9 8 6 37 37 H 1.09007 * 110.84197 * 298.38752 * 9 8 6 38 38 H 1.08996 * 112.19951 * 294.76277 * 12 10 9 39 39 H 1.08993 * 112.19824 * 167.77497 * 12 10 9 40 40 H 1.09004 * 110.43291 * 189.70714 * 15 13 8 41 41 H 1.08996 * 110.43649 * 312.20881 * 15 13 8 42 42 H 0.97000 * 119.99805 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5035 8 7 2.0673 -2.6654 2.4171 9 6 2.9419 -2.1775 3.5178 10 6 3.0763 -3.3803 4.5028 11 1 3.3680 -3.1525 5.5280 12 6 1.6644 -4.0394 4.2991 13 6 1.7580 -4.0897 2.7334 14 1 0.8965 -4.5126 2.2165 15 6 3.1030 -4.8558 2.5462 16 6 3.9788 -4.3959 3.7352 17 1 4.2298 -5.2425 4.3742 18 8 5.1668 -3.7548 3.2665 19 6 6.2739 -4.5187 3.1602 20 1 6.2352 -5.5653 3.4240 21 6 7.4611 -3.9602 2.7123 22 7 7.5083 -2.6850 2.3913 23 14 8.9937 -5.0179 2.5644 24 1 8.7384 -6.1289 1.6128 25 1 10.1208 -4.1893 2.0663 26 1 9.3399 -5.5765 3.8961 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6768 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1299 -0.7217 -1.2491 36 1 2.4683 -1.3318 4.0163 37 1 3.9218 -1.8902 3.1362 38 1 0.8555 -3.3949 4.6430 39 1 1.6069 -5.0344 4.7403 40 1 2.9371 -5.9322 2.5898 41 1 3.5698 -4.5798 1.6007 42 1 8.3389 -2.2943 2.0775 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224378439.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:54 Heat of formation + Delta-G solvation = -115.672809 kcal Electronic energy + Delta-G solvation = -23902.420413 eV Core-core repulsion = 20462.018592 eV Total energy + Delta-G solvation = -3440.401821 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.05928 -40.89716 -38.02610 -37.30213 -35.15867 -33.91844 -32.92030 -30.69573 -28.49056 -28.37575 -28.30023 -26.48348 -25.72032 -23.35930 -21.39779 -20.99540 -20.04110 -19.54771 -18.95552 -17.74209 -17.34647 -17.30388 -16.45538 -16.26603 -15.95899 -15.40891 -15.00451 -14.81196 -14.51319 -14.18348 -13.84138 -13.65486 -13.39030 -13.34441 -13.13551 -13.03132 -12.88382 -12.85215 -12.70090 -12.61725 -12.39311 -12.31209 -12.21163 -12.12608 -12.03264 -11.70635 -11.38377 -11.28624 -11.11850 -10.86183 -10.08060 -9.64291 -8.14017 -5.81171 1.11363 1.38647 1.45553 1.52176 1.78470 2.33527 2.85094 3.18604 3.39458 3.51369 3.65574 3.75349 3.80091 3.94407 3.97512 4.14076 4.20816 4.31548 4.44400 4.55564 4.59886 4.63768 4.71277 4.74031 4.80107 4.83330 4.85384 4.86876 4.97966 5.02539 5.08408 5.16277 5.18847 5.25063 5.26753 5.30421 5.35589 5.36493 5.51091 6.23812 6.50802 7.28241 7.29948 8.13629 9.10177 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017124 B = 0.005467 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.694889 B = 5120.094403 C = 6115.753402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.119 3.881 3 C -0.135 4.135 4 C -0.179 4.179 5 O -0.375 6.375 6 C 0.663 3.337 7 O -0.597 6.597 8 N -0.604 5.604 9 C 0.120 3.880 10 C -0.097 4.097 11 H 0.137 0.863 12 C -0.108 4.108 13 C 0.144 3.856 14 H 0.128 0.872 15 C -0.153 4.153 16 C 0.077 3.923 17 H 0.058 0.942 18 O -0.316 6.316 19 C -0.368 4.368 20 H 0.072 0.928 21 C -0.043 4.043 22 N -0.939 5.939 23 Si 0.997 3.003 24 H -0.270 1.270 25 H -0.284 1.284 26 H -0.261 1.261 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.042 0.958 36 H 0.080 0.920 37 H 0.045 0.955 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.094 0.906 41 H 0.029 0.971 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.670 2.798 1.018 14.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.083 3.917 3 C -0.192 4.192 4 C -0.236 4.236 5 O -0.290 6.290 6 C 0.419 3.581 7 O -0.490 6.490 8 N -0.345 5.345 9 C -0.002 4.002 10 C -0.115 4.115 11 H 0.155 0.845 12 C -0.145 4.145 13 C 0.043 3.957 14 H 0.146 0.854 15 C -0.192 4.192 16 C 0.018 3.982 17 H 0.076 0.924 18 O -0.231 6.231 19 C -0.447 4.447 20 H 0.089 0.911 21 C -0.236 4.236 22 N -0.584 5.584 23 Si 0.820 3.180 24 H -0.195 1.195 25 H -0.209 1.209 26 H -0.185 1.185 27 H 0.084 0.916 28 H 0.115 0.885 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.128 0.872 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.119 0.881 39 H 0.137 0.863 40 H 0.113 0.887 41 H 0.048 0.952 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.806 3.082 0.531 15.133 hybrid contribution 1.272 -0.572 -0.559 1.502 sum -13.534 2.510 -0.027 13.765 Atomic orbital electron populations 1.22416 0.92807 1.03773 1.03845 1.22477 0.95383 0.92592 0.81275 1.21881 1.01761 0.90890 1.04646 1.22464 1.00712 1.02328 0.98113 1.86365 1.71762 1.23446 1.47404 1.17695 0.78646 0.80704 0.81066 1.90814 1.43701 1.71195 1.43265 1.48267 1.51222 1.13547 1.21453 1.22434 0.93116 0.97532 0.87139 1.24075 0.95406 0.93717 0.98320 0.84519 1.23828 0.95485 1.03354 0.91870 1.23777 0.96750 0.77805 0.97380 0.85435 1.23541 0.96060 1.00721 0.98886 1.23271 0.86493 0.94832 0.93562 0.92394 1.85632 1.16274 1.36601 1.84609 1.21313 0.88006 0.92730 1.42672 0.91085 1.26100 1.01343 0.97563 0.98580 1.70191 1.27302 1.13173 1.47718 0.84935 0.76789 0.77204 0.79043 1.19506 1.20893 1.18532 0.91637 0.88525 0.91918 0.92669 0.87152 0.90841 0.92198 0.88162 0.93838 0.90157 0.93636 0.88129 0.86313 0.88732 0.95207 0.93468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 8.37 71.98 0.60 -3.66 16 2 C 0.12 3.49 1.13 -10.79 -0.01 3.48 16 3 C -0.13 -3.04 8.85 71.98 0.64 -2.40 16 4 C -0.18 -5.45 8.37 71.98 0.60 -4.85 16 5 O -0.37 -14.21 9.58 -55.45 -0.53 -14.74 16 6 C 0.66 26.51 7.99 129.79 1.04 27.54 16 7 O -0.60 -24.67 12.21 19.80 0.24 -24.43 16 8 N -0.60 -22.65 2.99 -896.71 -2.68 -25.33 16 9 C 0.12 4.48 6.26 86.99 0.54 5.02 16 10 C -0.10 -3.05 5.20 -7.22 -0.04 -3.09 16 11 H 0.14 3.71 8.14 -2.39 -0.02 3.69 16 12 C -0.11 -2.49 6.61 33.43 0.22 -2.27 16 13 C 0.14 4.48 5.03 46.87 0.24 4.72 16 14 H 0.13 3.62 8.05 -2.39 -0.02 3.60 16 15 C -0.15 -5.75 6.19 32.17 0.20 -5.56 16 16 C 0.08 3.15 3.11 32.22 0.10 3.25 16 17 H 0.06 2.22 7.81 -2.39 -0.02 2.21 16 18 O -0.32 -17.68 7.97 -81.94 -0.65 -18.33 16 19 C -0.37 -21.40 9.82 67.92 0.67 -20.73 16 20 H 0.07 3.83 7.63 -2.91 -0.02 3.80 16 21 C -0.04 -2.54 5.49 84.83 0.47 -2.07 16 22 N -0.94 -60.33 13.67 21.61 0.30 -60.04 16 23 Si 1.00 45.55 29.55 68.60 2.03 47.57 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 26 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 27 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.06 1.90 5.88 -2.39 -0.01 1.88 16 30 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.06 2.16 5.88 -2.39 -0.01 2.14 16 34 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.05 2.22 6.84 -2.38 -0.02 2.21 16 38 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.09 2.96 8.14 -2.38 -0.02 2.94 16 41 H 0.03 1.40 8.00 -2.39 -0.02 1.38 16 42 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -77.67 335.81 4.96 -72.72 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.99 Total: 23.20 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 5.26 Total: -0.61 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -2.38 Total: -85.36 kcal Atomic # 8 Polarization: -56.57 SS G_CDS: -0.94 Total: -57.51 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -77.67 4.96 -72.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378439.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.958 kcal (2) G-P(sol) polarization free energy of solvation -77.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds