Wall clock time and date at job start Tue Mar 31 2020 06:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47434 * 2 1 4 4 C 1.52995 * 109.47399 * 239.99628 * 2 1 3 5 5 O 1.45208 * 109.47185 * 119.99483 * 2 1 3 6 6 C 1.34632 * 116.99497 * 60.00244 * 5 2 1 7 7 O 1.21511 * 120.00754 * 0.27100 * 6 5 2 8 8 N 1.34784 * 119.99600 * 180.02562 * 6 5 2 9 9 C 1.47780 * 126.66021 * 0.02562 * 8 6 5 10 10 C 1.56041 * 105.24930 * 179.08240 * 9 8 6 11 11 H 1.09000 * 116.44202 * 200.86546 * 10 9 8 12 12 C 1.57140 * 99.44743 * 327.18451 * 10 9 8 13 13 C 1.49137 * 126.65590 * 179.70756 * 8 6 5 14 14 H 1.09005 * 115.70917 * 341.56473 * 13 8 6 15 15 C 1.59596 * 103.67093 * 110.53380 * 13 8 6 16 16 C 1.54663 * 104.12397 * 71.25439 * 15 13 8 17 17 H 1.08997 * 110.49745 * 239.94703 * 16 15 13 18 18 O 1.42899 * 110.61363 * 117.32378 * 16 15 13 19 19 C 1.34919 * 116.99994 * 95.22073 * 18 16 15 20 20 H 1.08000 * 120.00237 * 0.02562 * 19 18 16 21 21 C 1.38634 * 120.00216 * 179.97438 * 19 18 16 22 22 N 1.31591 * 119.99726 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00577 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47118 * 90.00045 * 23 21 19 25 25 H 1.48496 * 109.47551 * 210.00548 * 23 21 19 26 26 H 1.48508 * 109.47031 * 330.00758 * 23 21 19 27 27 H 1.09011 * 109.46913 * 300.00328 * 1 2 3 28 28 H 1.08999 * 109.46952 * 60.00426 * 1 2 3 29 29 H 1.08996 * 109.47301 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47261 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46703 * 299.99726 * 3 2 1 32 32 H 1.08994 * 109.47350 * 59.99586 * 3 2 1 33 33 H 1.09005 * 109.47242 * 300.00024 * 4 2 1 34 34 H 1.08999 * 109.47112 * 60.00044 * 4 2 1 35 35 H 1.08998 * 109.47402 * 180.02562 * 4 2 1 36 36 H 1.08996 * 110.29193 * 298.03300 * 9 8 6 37 37 H 1.09004 * 110.28564 * 60.04526 * 9 8 6 38 38 H 1.08999 * 112.19925 * 167.77879 * 12 10 9 39 39 H 1.09005 * 112.19258 * 294.75340 * 12 10 9 40 40 H 1.09002 * 111.01582 * 312.41810 * 15 13 8 41 41 H 1.08996 * 110.19147 * 189.68529 * 15 13 8 42 42 H 0.97000 * 120.00001 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1857 6 6 1.6522 -1.9722 1.3384 7 8 0.9553 -2.5110 0.5015 8 7 2.0672 -2.6653 2.4174 9 6 2.9170 -2.1614 3.5165 10 6 3.0668 -3.3614 4.5026 11 1 3.3493 -3.1160 5.5263 12 6 1.6637 -4.0390 4.2993 13 6 1.7525 -4.0876 2.7371 14 1 0.8960 -4.5117 2.2130 15 6 3.1496 -4.8351 2.5460 16 6 4.0009 -4.3564 3.7452 17 1 4.8989 -3.8465 3.3963 18 8 4.3474 -5.4574 4.5876 19 6 5.5478 -6.0361 4.3766 20 1 6.1979 -5.6631 3.5990 21 6 5.9472 -7.1090 5.1585 22 7 5.1553 -7.5632 6.1063 23 14 7.6088 -7.9107 4.8660 24 1 8.6365 -7.2390 5.7015 25 1 7.5361 -9.3482 5.2312 26 1 7.9750 -7.7820 3.4325 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2489 36 1 3.8927 -1.8628 3.1334 37 1 2.4331 -1.3203 4.0131 38 1 1.6190 -5.0343 4.7415 39 1 0.8464 -3.4046 4.6428 40 1 3.6210 -4.5483 1.6060 41 1 3.0072 -5.9149 2.5874 42 1 5.4346 -8.3140 6.6532 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224378440.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:58 Heat of formation + Delta-G solvation = -94.981707 kcal Electronic energy + Delta-G solvation = -23402.385056 eV Core-core repulsion = 19962.880469 eV Total energy + Delta-G solvation = -3439.504588 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.85094 -39.58851 -36.73480 -35.67612 -34.11589 -32.12743 -31.12048 -29.24881 -27.54215 -27.48176 -27.26585 -24.90241 -23.82393 -22.08195 -20.19328 -19.66769 -18.72545 -17.78683 -17.63202 -16.53384 -16.22506 -15.47942 -15.19474 -14.92486 -14.55053 -14.07301 -13.80861 -13.71305 -13.09365 -12.65516 -12.50776 -12.41651 -12.32654 -12.14556 -11.99975 -11.94509 -11.62777 -11.47757 -11.35778 -11.27081 -11.04808 -10.93104 -10.82118 -10.67066 -10.38480 -10.35407 -10.03011 -9.91709 -9.53482 -9.12173 -8.43753 -7.99895 -5.97468 -3.60803 2.18782 2.98678 3.29703 3.33175 3.36527 3.94017 4.27088 4.60664 4.64307 4.72614 4.78950 4.85636 4.90955 5.26978 5.31283 5.33559 5.39312 5.40536 5.47803 5.54043 5.61596 5.66601 5.74125 5.80350 5.82640 5.87177 5.99948 6.02284 6.14261 6.18093 6.22073 6.26083 6.40703 6.47669 6.55622 6.63035 6.74920 6.88471 7.45289 7.72279 8.40734 8.47472 9.46404 10.13615 11.23086 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.032464 B = 0.003729 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.279485 B = 7506.710538 C = 7771.259463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.364 6.364 6 C 0.666 3.334 7 O -0.576 6.576 8 N -0.602 5.602 9 C 0.111 3.889 10 C -0.101 4.101 11 H 0.119 0.881 12 C -0.128 4.128 13 C 0.144 3.856 14 H 0.118 0.882 15 C -0.152 4.152 16 C 0.098 3.902 17 H 0.046 0.954 18 O -0.279 6.279 19 C -0.361 4.361 20 H 0.061 0.939 21 C 0.024 3.976 22 N -0.888 5.888 23 Si 0.922 3.078 24 H -0.281 1.281 25 H -0.283 1.283 26 H -0.276 1.276 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.087 0.913 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.503 15.566 -9.402 19.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.098 3.902 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.278 6.278 6 C 0.422 3.578 7 O -0.467 6.467 8 N -0.344 5.344 9 C -0.011 4.011 10 C -0.120 4.120 11 H 0.137 0.863 12 C -0.166 4.166 13 C 0.043 3.957 14 H 0.136 0.864 15 C -0.191 4.191 16 C 0.038 3.962 17 H 0.064 0.936 18 O -0.193 6.193 19 C -0.440 4.440 20 H 0.079 0.921 21 C -0.174 4.174 22 N -0.531 5.531 23 Si 0.750 3.250 24 H -0.207 1.207 25 H -0.209 1.209 26 H -0.201 1.201 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.120 0.880 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.106 0.894 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.860 15.331 -9.538 19.693 hybrid contribution 1.054 -0.231 -0.483 1.183 sum -6.805 15.100 -10.021 19.358 Atomic orbital electron populations 1.22504 0.94185 1.05057 1.02176 1.22012 0.94252 0.91477 0.82463 1.21844 1.02262 0.92687 1.02882 1.22514 1.01576 1.03616 0.96340 1.86321 1.71607 1.23914 1.46000 1.17543 0.78710 0.80124 0.81428 1.90864 1.42417 1.70517 1.42863 1.48074 1.52266 1.13264 1.20749 1.22492 0.94368 0.96840 0.87427 1.23983 0.96085 0.93318 0.98615 0.86264 1.23743 0.96473 1.02665 0.93721 1.24374 0.98138 0.77685 0.95465 0.86402 1.24278 0.94222 1.01461 0.99111 1.22923 0.94493 0.89098 0.89705 0.93571 1.85667 1.35948 1.43360 1.54366 1.20863 0.92836 1.13154 1.17130 0.92082 1.24920 0.98601 0.97212 0.96681 1.70012 1.35972 1.26210 1.20889 0.86009 0.82198 0.78673 0.78158 1.20738 1.20912 1.20105 0.92316 0.91372 0.89348 0.91502 0.90333 0.91567 0.89275 0.91387 0.92228 0.91177 0.91330 0.88015 0.91222 0.92165 0.89411 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 8.37 37.16 0.31 -1.68 16 2 C 0.13 1.56 1.13 -90.62 -0.10 1.46 16 3 C -0.14 -1.19 8.85 37.16 0.33 -0.86 16 4 C -0.18 -2.10 8.37 37.16 0.31 -1.79 16 5 O -0.36 -5.26 9.55 -40.30 -0.38 -5.65 16 6 C 0.67 10.88 7.97 54.06 0.43 11.31 16 7 O -0.58 -10.25 12.20 -19.28 -0.24 -10.49 16 8 N -0.60 -9.57 2.92 -160.71 -0.47 -10.03 16 9 C 0.11 1.62 6.25 -1.71 -0.01 1.61 16 10 C -0.10 -1.68 5.00 -85.09 -0.43 -2.11 16 11 H 0.12 1.93 8.14 -51.93 -0.42 1.50 16 12 C -0.13 -2.01 6.62 -22.57 -0.15 -2.16 16 13 C 0.14 2.33 5.23 -60.85 -0.32 2.01 16 14 H 0.12 1.83 8.04 -51.93 -0.42 1.41 16 15 C -0.15 -2.85 6.33 -22.16 -0.14 -2.99 16 16 C 0.10 2.01 2.79 -24.20 -0.07 1.94 16 17 H 0.05 0.96 7.52 -51.93 -0.39 0.57 16 18 O -0.28 -7.47 9.46 -16.48 -0.16 -7.63 16 19 C -0.36 -10.21 9.82 30.88 0.30 -9.90 16 20 H 0.06 1.65 7.63 -52.49 -0.40 1.25 16 21 C 0.02 0.69 5.49 -17.51 -0.10 0.60 16 22 N -0.89 -27.05 13.68 55.48 0.76 -26.29 16 23 Si 0.92 21.72 29.55 -169.99 -5.02 16.70 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 1.19 5.89 -51.93 -0.31 0.89 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 1.26 5.87 -51.93 -0.30 0.95 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 1.01 7.82 -51.93 -0.41 0.61 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.09 1.78 8.00 -51.93 -0.42 1.37 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 LS Contribution 337.70 15.07 5.09 5.09 Total: -1.00 -32.40 337.70 -6.89 -39.29 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.85 Total: 1.57 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 0.38 Total: -2.57 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.29 Total: -36.32 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.78 Total: -23.76 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.40 -6.89 -39.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378440.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.688 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds