Wall clock time and date at job start Tue Mar 31 2020 06:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 O 1.45206 * 109.46989 * 119.99587 * 2 1 3 6 6 C 1.34639 * 116.99892 * 59.99951 * 5 2 1 7 7 O 1.21513 * 119.99857 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99616 * 179.97438 * 6 5 2 9 9 C 1.47219 * 136.18419 * 0.02562 * 8 6 5 10 10 C 1.53639 * 88.20246 * 206.41335 * 9 8 6 11 11 C 1.46290 * 136.17538 * 179.62612 * 8 6 5 12 12 C 1.53075 * 120.98351 * 27.46154 * 11 8 6 13 13 C 1.53916 * 86.84367 * 209.64835 * 12 11 8 14 14 O 1.42902 * 113.66071 * 270.26778 * 13 12 11 15 15 C 1.34925 * 116.99835 * 247.70690 * 14 13 12 16 16 H 1.08007 * 120.00091 * 359.97438 * 15 14 13 17 17 C 1.38632 * 120.00091 * 180.02562 * 15 14 13 18 18 N 1.31581 * 119.99795 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00005 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47203 * 89.99815 * 19 17 15 21 21 H 1.48495 * 109.47118 * 209.99726 * 19 17 15 22 22 H 1.48495 * 109.47098 * 329.99742 * 19 17 15 23 23 C 1.53067 * 120.99100 * 279.41798 * 11 8 6 24 24 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 25 25 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 26 26 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 29 29 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 30 30 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 31 31 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 32 32 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 33 33 H 1.09001 * 113.43190 * 321.24351 * 9 8 6 34 34 H 1.08994 * 113.43390 * 91.58007 * 9 8 6 35 35 H 1.09000 * 114.27257 * 88.17094 * 10 9 8 36 36 H 1.08999 * 114.27078 * 221.01799 * 10 9 8 37 37 H 1.08996 * 113.65256 * 324.13716 * 12 11 8 38 38 H 1.09001 * 113.65107 * 95.16466 * 12 11 8 39 39 H 1.08998 * 113.58456 * 139.45485 * 13 12 11 40 40 H 0.97003 * 119.99670 * 180.02562 * 18 17 15 41 41 H 1.09001 * 113.65343 * 264.83099 * 23 11 8 42 42 H 1.08999 * 113.64865 * 35.85596 * 23 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6521 -1.9723 1.3385 7 8 0.9508 -2.5094 0.5042 8 7 2.0680 -2.6655 2.4169 9 6 2.8931 -2.3888 3.6042 10 6 3.2333 -3.8861 3.6571 11 6 1.8935 -4.0245 2.9296 12 6 1.6280 -5.1964 1.9813 13 6 0.8477 -5.8453 3.1385 14 8 1.6551 -6.6649 3.9861 15 6 1.4160 -7.9925 3.9629 16 1 0.6423 -8.3908 3.3230 17 6 2.1625 -8.8454 4.7612 18 7 3.1046 -8.3602 5.5411 19 14 1.8308 -10.6835 4.7295 20 1 2.6757 -11.3211 3.6879 21 1 2.1548 -11.2679 6.0557 22 1 0.3984 -10.9228 4.4198 23 6 0.6246 -4.4244 3.6865 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6766 -1.7490 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2489 33 1 3.7553 -1.7556 3.3949 34 1 2.3160 -2.0449 4.4626 35 1 4.1020 -4.1694 3.0627 36 1 3.2411 -4.3086 4.6618 37 1 1.0048 -4.9346 1.1263 38 1 2.5277 -5.7435 1.6996 39 1 -0.0706 -6.3398 2.8220 40 1 3.6272 -8.9570 6.0993 41 1 0.7211 -4.3534 4.7700 42 1 -0.2791 -3.9467 3.3082 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224378536.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:31 Heat of formation + Delta-G solvation = -49.617055 kcal Electronic energy + Delta-G solvation = -23280.803174 eV Core-core repulsion = 19843.265745 eV Total energy + Delta-G solvation = -3437.537429 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.96659 -39.81139 -36.85343 -36.18261 -34.16331 -33.55574 -31.29308 -29.36273 -27.53039 -27.45993 -25.38024 -24.73325 -23.83082 -22.93261 -20.84212 -19.72348 -18.47704 -17.78342 -16.82369 -16.37571 -16.05873 -15.39794 -15.26504 -14.89924 -14.46442 -14.19290 -13.97469 -13.47069 -13.23055 -12.86906 -12.64344 -12.47663 -12.22669 -12.10371 -11.98284 -11.89628 -11.68868 -11.55352 -11.36038 -11.32048 -11.07525 -11.00426 -10.90806 -10.60036 -10.34363 -10.26135 -9.76307 -9.62364 -9.40156 -9.08592 -8.44749 -7.99393 -5.98151 -3.60864 2.16367 3.04772 3.30776 3.34076 3.37309 3.92617 4.27696 4.62399 4.65436 4.69293 4.80457 4.96052 5.04579 5.17619 5.28969 5.30437 5.32182 5.40686 5.50707 5.55286 5.57872 5.62557 5.71804 5.76070 5.80568 5.87866 5.89581 6.20973 6.21963 6.24714 6.27464 6.38407 6.44282 6.45331 6.56703 6.70067 6.83712 6.97861 7.46929 8.01755 8.40789 8.54793 9.46019 10.11464 11.22430 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.039949 B = 0.003581 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.728705 B = 7818.002452 C = 8105.930749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.366 6.366 6 C 0.676 3.324 7 O -0.569 6.569 8 N -0.622 5.622 9 C 0.102 3.898 10 C -0.114 4.114 11 C 0.169 3.831 12 C -0.164 4.164 13 C 0.089 3.911 14 O -0.265 6.265 15 C -0.361 4.361 16 H 0.064 0.936 17 C 0.025 3.975 18 N -0.888 5.888 19 Si 0.924 3.076 20 H -0.281 1.281 21 H -0.284 1.284 22 H -0.275 1.275 23 C -0.138 4.138 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.258 0.742 41 H 0.083 0.917 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.326 17.369 -7.804 19.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.196 4.196 4 C -0.240 4.240 5 O -0.281 6.281 6 C 0.433 3.567 7 O -0.459 6.459 8 N -0.363 5.363 9 C -0.021 4.021 10 C -0.152 4.152 11 C 0.087 3.913 12 C -0.202 4.202 13 C 0.027 3.973 14 O -0.179 6.179 15 C -0.441 4.441 16 H 0.082 0.918 17 C -0.174 4.174 18 N -0.531 5.531 19 Si 0.751 3.249 20 H -0.207 1.207 21 H -0.209 1.209 22 H -0.201 1.201 23 C -0.177 4.177 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.107 0.893 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.126 0.874 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.101 0.899 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.353 17.435 -8.072 19.260 hybrid contribution -0.423 -0.809 -0.310 0.963 sum -1.775 16.626 -8.381 18.704 Atomic orbital electron populations 1.22508 0.94187 1.05145 1.02139 1.22002 0.94277 0.91414 0.82497 1.21841 1.02157 0.92753 1.02870 1.22514 1.01477 1.03690 0.96340 1.86310 1.71949 1.23913 1.45971 1.17414 0.78041 0.79737 0.81535 1.90859 1.41463 1.70327 1.43285 1.48624 1.53053 1.14856 1.19740 1.23045 0.93861 0.98327 0.86855 1.23088 0.95567 0.93639 1.02902 1.22918 0.96059 0.78347 0.93978 1.23806 1.02465 0.95665 0.98306 1.22493 0.93783 0.90301 0.90678 1.85630 1.55681 1.17109 1.59476 1.20929 1.18215 0.80694 1.24212 0.91804 1.24912 0.96798 0.98612 0.97052 1.70003 1.22126 1.34244 1.26718 0.85977 0.78239 0.83197 0.77443 1.20736 1.20933 1.20055 1.23480 0.95948 0.97288 1.01025 0.92352 0.91375 0.89275 0.91578 0.90335 0.91607 0.89227 0.91400 0.92293 0.90605 0.89823 0.88565 0.87390 0.89131 0.90429 0.92348 0.93219 0.89867 0.89677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 8.37 37.16 0.31 -1.80 16 2 C 0.14 1.61 1.13 -90.62 -0.10 1.51 16 3 C -0.14 -1.21 8.85 37.16 0.33 -0.88 16 4 C -0.18 -2.15 8.37 37.16 0.31 -1.84 16 5 O -0.37 -5.47 9.92 -40.32 -0.40 -5.87 16 6 C 0.68 11.58 8.26 54.05 0.45 12.03 16 7 O -0.57 -10.72 11.63 -19.28 -0.22 -10.94 16 8 N -0.62 -10.32 3.69 -179.06 -0.66 -10.98 16 9 C 0.10 1.39 8.64 -9.77 -0.08 1.31 16 10 C -0.11 -1.84 8.24 -26.35 -0.22 -2.05 16 11 C 0.17 3.03 1.38 -138.27 -0.19 2.84 16 12 C -0.16 -3.26 7.60 -26.22 -0.20 -3.45 16 13 C 0.09 1.92 4.41 -25.78 -0.11 1.80 16 14 O -0.26 -7.14 9.71 -16.49 -0.16 -7.30 16 15 C -0.36 -10.27 9.85 30.88 0.30 -9.96 16 16 H 0.06 1.73 7.59 -52.48 -0.40 1.33 16 17 C 0.02 0.70 5.49 -17.51 -0.10 0.60 16 18 N -0.89 -26.72 13.67 55.48 0.76 -25.96 16 19 Si 0.92 21.68 29.55 -169.99 -5.02 16.66 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 C -0.14 -2.53 7.79 -26.22 -0.20 -2.74 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.09 1.28 5.88 -51.93 -0.31 0.97 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 1.31 5.88 -51.93 -0.31 1.00 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 37 H 0.09 1.79 7.28 -51.93 -0.38 1.42 16 38 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 39 H 0.06 1.25 7.80 -51.93 -0.41 0.84 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 344.63 15.07 5.19 5.19 Total: -1.00 -32.42 344.63 -6.87 -39.28 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.85 Total: 2.56 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 0.49 Total: -2.64 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.10 Total: -36.94 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.78 Total: -24.11 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.42 -6.87 -39.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378536.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.333 kcal (2) G-P(sol) polarization free energy of solvation -32.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds