Wall clock time and date at job start Tue Mar 31 2020 06:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 O 1.45206 * 109.46989 * 119.99587 * 2 1 3 6 6 C 1.34639 * 116.99892 * 59.99951 * 5 2 1 7 7 O 1.21513 * 119.99857 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99616 * 179.97438 * 6 5 2 9 9 C 1.47219 * 136.18419 * 0.02562 * 8 6 5 10 10 C 1.53639 * 88.20246 * 206.41335 * 9 8 6 11 11 C 1.46290 * 136.17538 * 179.62612 * 8 6 5 12 12 C 1.53075 * 120.98351 * 27.46154 * 11 8 6 13 13 C 1.53916 * 86.84367 * 209.64835 * 12 11 8 14 14 O 1.42902 * 113.66071 * 270.26778 * 13 12 11 15 15 C 1.34925 * 116.99835 * 247.70690 * 14 13 12 16 16 H 1.08007 * 120.00091 * 359.97438 * 15 14 13 17 17 C 1.38632 * 120.00091 * 180.02562 * 15 14 13 18 18 N 1.31581 * 119.99795 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00005 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47203 * 89.99815 * 19 17 15 21 21 H 1.48495 * 109.47118 * 209.99726 * 19 17 15 22 22 H 1.48495 * 109.47098 * 329.99742 * 19 17 15 23 23 C 1.53067 * 120.99100 * 279.41798 * 11 8 6 24 24 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 25 25 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 26 26 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 29 29 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 30 30 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 31 31 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 32 32 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 33 33 H 1.09001 * 113.43190 * 321.24351 * 9 8 6 34 34 H 1.08994 * 113.43390 * 91.58007 * 9 8 6 35 35 H 1.09000 * 114.27257 * 88.17094 * 10 9 8 36 36 H 1.08999 * 114.27078 * 221.01799 * 10 9 8 37 37 H 1.08996 * 113.65256 * 324.13716 * 12 11 8 38 38 H 1.09001 * 113.65107 * 95.16466 * 12 11 8 39 39 H 1.08998 * 113.58456 * 139.45485 * 13 12 11 40 40 H 0.97003 * 119.99670 * 180.02562 * 18 17 15 41 41 H 1.09001 * 113.65343 * 264.83099 * 23 11 8 42 42 H 1.08999 * 113.64865 * 35.85596 * 23 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6521 -1.9723 1.3385 7 8 0.9508 -2.5094 0.5042 8 7 2.0680 -2.6655 2.4169 9 6 2.8931 -2.3888 3.6042 10 6 3.2333 -3.8861 3.6571 11 6 1.8935 -4.0245 2.9296 12 6 1.6280 -5.1964 1.9813 13 6 0.8477 -5.8453 3.1385 14 8 1.6551 -6.6649 3.9861 15 6 1.4160 -7.9925 3.9629 16 1 0.6423 -8.3908 3.3230 17 6 2.1625 -8.8454 4.7612 18 7 3.1046 -8.3602 5.5411 19 14 1.8308 -10.6835 4.7295 20 1 2.6757 -11.3211 3.6879 21 1 2.1548 -11.2679 6.0557 22 1 0.3984 -10.9228 4.4198 23 6 0.6246 -4.4244 3.6865 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6766 -1.7490 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2489 33 1 3.7553 -1.7556 3.3949 34 1 2.3160 -2.0449 4.4626 35 1 4.1020 -4.1694 3.0627 36 1 3.2411 -4.3086 4.6618 37 1 1.0048 -4.9346 1.1263 38 1 2.5277 -5.7435 1.6996 39 1 -0.0706 -6.3398 2.8220 40 1 3.6272 -8.9570 6.0993 41 1 0.7211 -4.3534 4.7700 42 1 -0.2791 -3.9467 3.3082 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224378536.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:31 Heat of formation + Delta-G solvation = -70.141774 kcal Electronic energy + Delta-G solvation = -23281.693192 eV Core-core repulsion = 19843.265745 eV Total energy + Delta-G solvation = -3438.427447 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.30141 -41.07581 -38.47446 -37.53364 -35.63898 -34.86915 -33.38923 -30.64632 -28.37262 -28.29155 -27.03487 -26.70934 -25.33290 -24.15619 -22.21045 -21.02400 -19.88208 -19.67470 -18.10327 -17.70604 -17.33925 -17.21927 -16.60073 -16.14413 -15.97316 -15.43180 -15.24158 -14.99266 -14.71004 -14.53058 -13.81879 -13.61248 -13.49988 -13.32817 -13.13685 -12.96224 -12.91233 -12.86357 -12.79230 -12.66716 -12.56309 -12.48546 -12.21557 -12.12251 -12.03041 -11.45449 -11.38918 -11.26006 -10.99567 -10.83379 -10.08871 -9.77775 -8.14320 -5.81918 0.95857 1.42912 1.47850 1.56769 1.74479 2.34017 2.79479 3.17749 3.31896 3.41058 3.59068 3.71207 3.76664 3.80162 3.94635 3.97960 4.13236 4.24537 4.40252 4.50860 4.57503 4.60673 4.63690 4.66349 4.75333 4.80584 4.83023 4.85552 4.87531 5.01970 5.07159 5.10837 5.12138 5.22270 5.27708 5.29568 5.31059 5.34469 5.50457 6.25080 6.73183 7.26568 7.29169 8.05676 9.09018 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.039949 B = 0.003581 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.728705 B = 7818.002452 C = 8105.930749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.121 3.879 3 C -0.132 4.132 4 C -0.180 4.180 5 O -0.366 6.366 6 C 0.672 3.328 7 O -0.593 6.593 8 N -0.627 5.627 9 C 0.116 3.884 10 C -0.115 4.115 11 C 0.169 3.831 12 C -0.157 4.157 13 C 0.070 3.930 14 O -0.293 6.293 15 C -0.379 4.379 16 H 0.068 0.932 17 C -0.034 4.034 18 N -0.930 5.930 19 Si 0.998 3.002 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.122 4.122 24 H 0.061 0.939 25 H 0.094 0.906 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.261 0.739 41 H 0.086 0.914 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.511 18.892 -8.219 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.085 3.915 3 C -0.189 4.189 4 C -0.237 4.237 5 O -0.281 6.281 6 C 0.429 3.571 7 O -0.484 6.484 8 N -0.368 5.368 9 C -0.006 4.006 10 C -0.153 4.153 11 C 0.085 3.915 12 C -0.196 4.196 13 C 0.010 3.990 14 O -0.208 6.208 15 C -0.458 4.458 16 H 0.086 0.914 17 C -0.228 4.228 18 N -0.574 5.574 19 Si 0.821 3.179 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.160 4.160 24 H 0.080 0.920 25 H 0.112 0.888 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.123 0.877 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.079 0.921 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.105 0.895 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.544 18.999 -8.500 20.871 hybrid contribution -0.402 -1.200 -0.283 1.297 sum -1.947 17.799 -8.783 19.943 Atomic orbital electron populations 1.22461 0.94036 1.03435 1.03639 1.22473 0.94665 0.92884 0.81468 1.21867 1.02386 0.90246 1.04424 1.22472 1.01521 1.02063 0.97619 1.86322 1.71865 1.22522 1.47429 1.17552 0.77825 0.80426 0.81258 1.90857 1.42463 1.71037 1.44090 1.48618 1.53342 1.14295 1.20512 1.23135 0.94458 0.96670 0.86308 1.23050 0.94520 0.95944 1.01811 1.22865 0.96753 0.78634 0.93213 1.23651 1.01309 0.96587 0.98030 1.22757 0.93436 0.91304 0.91483 1.85571 1.57269 1.16958 1.60976 1.21362 1.18381 0.81689 1.24320 0.91384 1.26030 0.96465 1.03754 0.96525 1.70152 1.23322 1.36233 1.27728 0.84861 0.78733 0.76613 0.77701 1.19939 1.20294 1.18708 1.23333 0.96894 0.94595 1.01220 0.91963 0.88770 0.92478 0.91251 0.87690 0.91129 0.92531 0.88745 0.92134 0.88105 0.87769 0.88753 0.88642 0.89301 0.92230 0.92637 0.93062 0.89529 0.88281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.85 8.37 71.98 0.60 -3.24 16 2 C 0.12 2.66 1.13 -10.80 -0.01 2.65 16 3 C -0.13 -1.86 8.85 71.98 0.64 -1.23 16 4 C -0.18 -3.97 8.37 71.98 0.60 -3.37 16 5 O -0.37 -10.38 9.92 -55.49 -0.55 -10.93 16 6 C 0.67 22.62 8.26 129.79 1.07 23.70 16 7 O -0.59 -22.56 11.63 19.80 0.23 -22.33 16 8 N -0.63 -20.23 3.69 -950.84 -3.51 -23.74 16 9 C 0.12 2.93 8.64 82.28 0.71 3.64 16 10 C -0.12 -3.69 8.24 30.84 0.25 -3.44 16 11 C 0.17 6.04 1.38 -0.46 0.00 6.03 16 12 C -0.16 -6.43 7.60 30.93 0.24 -6.20 16 13 C 0.07 3.13 4.41 31.21 0.14 3.27 16 14 O -0.29 -16.25 9.71 -81.94 -0.80 -17.05 16 15 C -0.38 -21.93 9.85 67.91 0.67 -21.26 16 16 H 0.07 3.75 7.59 -2.91 -0.02 3.72 16 17 C -0.03 -1.94 5.49 84.82 0.47 -1.48 16 18 N -0.93 -56.92 13.67 21.61 0.30 -56.62 16 19 Si 1.00 44.56 29.55 68.60 2.03 46.59 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 23 C -0.12 -4.44 7.79 30.93 0.24 -4.19 16 24 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 25 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 26 H 0.06 1.63 5.88 -2.39 -0.01 1.61 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.10 0.94 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 1.65 5.88 -2.39 -0.01 1.64 16 31 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 37 H 0.09 3.64 7.28 -2.39 -0.02 3.62 16 38 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.06 2.45 7.80 -2.39 -0.02 2.43 16 40 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 41 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 42 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -71.29 344.63 4.31 -66.98 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.99 Total: 22.22 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 5.62 Total: -5.12 kcal Atomic # 7 Polarization: -77.15 SS G_CDS: -3.21 Total: -80.36 kcal Atomic # 8 Polarization: -49.19 SS G_CDS: -1.12 Total: -50.31 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -71.29 4.31 -66.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378536.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.159 kcal (2) G-P(sol) polarization free energy of solvation -71.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds