Wall clock time and date at job start Tue Mar 31 2020 06:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.51290 * 120.80524 * 2 1 4 4 C 1.53400 * 108.42329 * 127.02340 * 3 2 1 5 5 N 1.46857 * 108.77451 * 49.42375 * 4 3 2 6 6 C 1.34776 * 120.38004 * 122.40248 * 5 4 3 7 7 O 1.21504 * 120.00265 * 179.97438 * 6 5 4 8 8 O 1.34645 * 120.00032 * 359.97438 * 6 5 4 9 9 C 1.45198 * 116.99909 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47105 * 59.99955 * 9 8 6 11 11 C 1.52999 * 109.46671 * 179.97438 * 9 8 6 12 12 C 1.52997 * 109.47445 * 299.99970 * 9 8 6 13 13 C 1.46859 * 119.24112 * 302.38560 * 5 4 3 14 14 C 1.51290 * 120.80701 * 179.97438 * 2 1 3 15 15 H 1.09005 * 109.70556 * 113.22268 * 14 2 1 16 16 O 1.42903 * 109.67313 * 352.71513 * 14 2 1 17 17 C 1.34928 * 117.00179 * 91.03519 * 16 14 2 18 18 H 1.07994 * 120.00220 * 359.97438 * 17 16 14 19 19 C 1.38637 * 119.99488 * 179.97438 * 17 16 14 20 20 N 1.31578 * 120.00355 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99599 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47297 * 179.97438 * 21 19 17 23 23 H 1.48503 * 109.47261 * 60.00076 * 21 19 17 24 24 H 1.48500 * 109.47454 * 300.00069 * 21 19 17 25 25 H 1.07998 * 119.99618 * 180.02562 * 1 2 3 26 26 H 1.08002 * 120.00125 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.67695 * 7.29595 * 3 2 1 28 28 H 1.09004 * 109.70894 * 246.77210 * 3 2 1 29 29 H 1.09002 * 109.58804 * 289.64106 * 4 3 2 30 30 H 1.08996 * 109.58839 * 169.21190 * 4 3 2 31 31 H 1.09005 * 109.46982 * 60.00003 * 10 9 8 32 32 H 1.08994 * 109.47179 * 179.97438 * 10 9 8 33 33 H 1.08997 * 109.47152 * 300.00300 * 10 9 8 34 34 H 1.09002 * 109.47070 * 60.00854 * 11 9 8 35 35 H 1.09005 * 109.46903 * 180.02562 * 11 9 8 36 36 H 1.08996 * 109.47730 * 300.00068 * 11 9 8 37 37 H 1.09001 * 109.46719 * 60.00279 * 12 9 8 38 38 H 1.08999 * 109.47432 * 179.97438 * 12 9 8 39 39 H 1.08997 * 109.47128 * 300.00098 * 12 9 8 40 40 H 1.09007 * 109.58381 * 297.82703 * 13 5 4 41 41 H 1.09002 * 109.70569 * 177.47752 * 13 5 4 42 42 H 0.97006 * 120.00240 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0848 1.2995 0.0000 4 6 3.0858 1.2671 1.1620 5 7 3.8268 0.0001 1.1123 6 6 5.1716 0.0001 1.0222 7 8 5.7778 -1.0521 0.9820 8 8 5.8433 1.1661 0.9768 9 6 7.2901 1.0901 0.8805 10 6 7.6776 0.3423 -0.3969 11 6 7.8734 2.5039 0.8401 12 6 7.8437 0.3439 2.0960 13 6 3.0858 -1.2668 1.1622 14 6 2.0849 -1.2994 0.0006 15 1 2.6207 -1.4083 -0.9424 16 8 1.1849 -2.3961 0.1717 17 6 0.6848 -2.9587 -0.9481 18 1 0.9689 -2.5768 -1.9175 19 6 -0.1936 -4.0272 -0.8542 20 7 -0.5393 -4.4929 0.3268 21 14 -0.8864 -4.8056 -2.4045 22 1 -1.7941 -5.9214 -2.0351 23 1 0.2272 -5.3288 -3.2360 24 1 -1.6427 -3.7860 -3.1750 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.3984 2.1361 0.1303 28 1 2.6207 1.4079 -0.9430 29 1 2.5497 1.3399 2.1082 30 1 3.7813 2.1011 1.0685 31 1 7.2832 0.8740 -1.2629 32 1 8.7637 0.2857 -0.4694 33 1 7.2619 -0.6648 -0.3686 34 1 7.5974 3.0370 1.7500 35 1 8.9596 2.4469 0.7674 36 1 7.4791 3.0352 -0.0261 37 1 7.4280 -0.6633 2.1243 38 1 8.9297 0.2865 2.0235 39 1 7.5676 0.8766 3.0060 40 1 2.5497 -1.3395 2.1085 41 1 3.7798 -2.1024 1.0704 42 1 -0.1798 -4.0884 1.1320 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224379421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:34 Heat of formation + Delta-G solvation = -119.724461 kcal Electronic energy + Delta-G solvation = -23489.995844 eV Core-core repulsion = 20049.418330 eV Total energy + Delta-G solvation = -3440.577514 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.04274 -40.14904 -38.35779 -37.33683 -35.27963 -34.46463 -33.85988 -31.37585 -29.30729 -28.37658 -28.28115 -26.29958 -24.79245 -24.34265 -22.62431 -20.81031 -20.10066 -19.74607 -18.46164 -17.75723 -17.47936 -16.92707 -16.61601 -16.40633 -16.06240 -15.50951 -15.45344 -15.33983 -14.72488 -14.44865 -14.35956 -13.90937 -13.62527 -13.29224 -13.25827 -13.09022 -12.89657 -12.87418 -12.85664 -12.50466 -12.45143 -12.33042 -12.16189 -11.93472 -11.80362 -11.44398 -11.41638 -11.34573 -11.09705 -10.42284 -10.20211 -9.64103 -8.65092 -5.94779 0.95603 1.30623 1.50918 1.61967 1.67912 1.80031 2.48267 2.72573 3.18052 3.44786 3.71516 3.76674 3.79290 3.81290 3.94743 3.98310 4.16764 4.34427 4.36908 4.41978 4.50925 4.60711 4.63006 4.67437 4.73352 4.75976 4.82131 4.85587 4.88960 4.98488 5.10304 5.12894 5.26549 5.28015 5.34930 5.36334 5.43911 5.69513 6.08067 6.23750 6.46910 7.16843 7.17415 7.84633 8.83220 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.026079 B = 0.004173 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.420060 B = 6708.349571 C = 7173.883991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.167 4.167 3 C -0.084 4.084 4 C 0.115 3.885 5 N -0.588 5.588 6 C 0.651 3.349 7 O -0.596 6.596 8 O -0.357 6.357 9 C 0.122 3.878 10 C -0.182 4.182 11 C -0.132 4.132 12 C -0.180 4.180 13 C 0.150 3.850 14 C 0.121 3.879 15 H 0.031 0.969 16 O -0.331 6.331 17 C -0.445 4.445 18 H 0.051 0.949 19 C -0.059 4.059 20 N -0.939 5.939 21 Si 1.136 2.864 22 H -0.278 1.278 23 H -0.271 1.271 24 H -0.266 1.266 25 H 0.073 0.927 26 H 0.126 0.874 27 H 0.114 0.886 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.119 0.881 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.398 18.581 0.691 23.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C -0.122 4.122 4 C -0.006 4.006 5 N -0.328 5.328 6 C 0.406 3.594 7 O -0.488 6.488 8 O -0.271 6.271 9 C 0.086 3.914 10 C -0.239 4.239 11 C -0.188 4.188 12 C -0.237 4.237 13 C 0.027 3.973 14 C 0.061 3.939 15 H 0.049 0.951 16 O -0.246 6.246 17 C -0.523 4.523 18 H 0.068 0.932 19 C -0.252 4.252 20 N -0.579 5.579 21 Si 0.955 3.045 22 H -0.203 1.203 23 H -0.197 1.197 24 H -0.191 1.191 25 H 0.091 0.909 26 H 0.143 0.857 27 H 0.133 0.867 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.137 0.863 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.121 0.879 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.112 0.888 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.638 17.074 0.302 21.854 hybrid contribution 0.944 0.610 0.452 1.211 sum 14.582 17.684 0.754 22.933 Atomic orbital electron populations 1.23733 0.95636 1.01726 0.99419 1.22617 0.96031 0.95883 1.02264 1.21182 0.97827 0.94170 0.99010 1.22005 0.94958 0.84252 0.99386 1.46867 1.02385 1.08531 1.75060 1.18054 0.82793 0.82675 0.75841 1.90890 1.67813 1.33062 1.56992 1.86288 1.23904 1.30725 1.86207 1.22489 0.73520 0.99197 0.96179 1.22490 1.03697 1.01187 0.96544 1.21867 1.01851 0.91218 1.03907 1.22475 1.02995 1.01230 0.97044 1.21199 0.92822 0.84953 0.98298 1.21157 0.89974 0.86617 0.96113 0.95123 1.85289 1.60901 1.46227 1.32203 1.21923 1.28825 1.16956 0.84644 0.93157 1.27774 0.95923 0.94942 1.06569 1.70721 1.45578 1.43258 0.98392 0.82646 0.76370 0.76024 0.69452 1.20259 1.19682 1.19093 0.90890 0.85651 0.86729 0.90837 0.89531 0.86337 0.91975 0.88747 0.92877 0.90754 0.87857 0.91024 0.92716 0.88838 0.91571 0.90354 0.90598 0.93579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.55 13.56 67.78 0.92 -5.63 16 2 C -0.17 -6.25 5.31 -16.12 -0.09 -6.33 16 3 C -0.08 -2.15 6.20 30.17 0.19 -1.96 16 4 C 0.12 2.76 6.46 86.45 0.56 3.32 16 5 N -0.59 -19.05 2.91 -948.83 -2.76 -21.81 16 6 C 0.65 21.53 7.73 129.79 1.00 22.53 16 7 O -0.60 -23.29 11.26 19.83 0.22 -23.07 16 8 O -0.36 -9.31 8.49 -55.55 -0.47 -9.78 16 9 C 0.12 2.55 1.13 -10.79 -0.01 2.54 16 10 C -0.18 -4.03 8.37 71.98 0.60 -3.43 16 11 C -0.13 -1.65 8.85 71.98 0.64 -1.01 16 12 C -0.18 -3.78 8.37 71.98 0.60 -3.18 16 13 C 0.15 6.02 6.10 86.44 0.53 6.55 16 14 C 0.12 5.53 3.10 30.16 0.09 5.62 16 15 H 0.03 1.51 7.80 -2.38 -0.02 1.49 16 16 O -0.33 -18.97 7.83 -81.97 -0.64 -19.61 16 17 C -0.44 -26.57 8.70 67.92 0.59 -25.98 16 18 H 0.05 2.95 7.64 -2.91 -0.02 2.92 16 19 C -0.06 -3.54 5.49 84.83 0.47 -3.07 16 20 N -0.94 -60.81 13.70 21.61 0.30 -60.51 16 21 Si 1.14 51.54 29.92 68.60 2.05 53.59 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 25 H 0.07 3.62 6.30 -2.91 -0.02 3.60 16 26 H 0.13 3.73 7.91 -2.91 -0.02 3.71 16 27 H 0.11 2.17 7.88 -2.39 -0.02 2.15 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.12 2.25 6.87 -2.39 -0.02 2.23 16 31 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.05 1.59 5.88 -2.39 -0.01 1.58 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.05 1.56 5.88 -2.39 -0.01 1.55 16 38 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.08 3.10 8.14 -2.38 -0.02 3.08 16 41 H 0.08 3.37 6.96 -2.39 -0.02 3.35 16 42 H 0.26 17.19 7.97 -92.70 -0.74 16.45 16 Total: -1.00 -76.04 337.34 5.81 -70.23 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 1.03 Total: 21.00 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 6.09 Total: -10.04 kcal Atomic # 7 Polarization: -79.86 SS G_CDS: -2.46 Total: -82.33 kcal Atomic # 8 Polarization: -51.57 SS G_CDS: -0.89 Total: -52.46 kcal Atomic # 14 Polarization: 51.54 SS G_CDS: 2.05 Total: 53.59 kcal Total: -76.04 5.81 -70.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224379421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.494 kcal (2) G-P(sol) polarization free energy of solvation -76.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds