Wall clock time and date at job start Tue Mar 31 2020 06:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 O 1.45194 * 109.47339 * 239.99574 * 2 1 3 6 6 C 1.34639 * 116.99841 * 60.00459 * 5 2 1 7 7 O 1.21508 * 119.99991 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00005 * 179.97438 * 6 5 2 9 9 C 1.47782 * 126.66046 * 0.02562 * 8 6 5 10 10 C 1.56040 * 105.25001 * 180.88916 * 9 8 6 11 11 H 1.09000 * 116.44206 * 160.01162 * 10 9 8 12 12 C 1.56072 * 103.95092 * 289.40951 * 10 9 8 13 13 C 1.54669 * 104.13203 * 67.26948 * 12 10 9 14 14 C 1.49136 * 126.65887 * 179.70698 * 8 6 5 15 15 H 1.09002 * 115.70921 * 18.45579 * 14 8 6 16 16 C 1.57142 * 99.44679 * 32.82384 * 10 9 8 17 17 H 1.09001 * 112.20168 * 65.23429 * 16 10 9 18 18 O 1.42893 * 112.20214 * 192.22286 * 16 10 9 19 19 C 1.34931 * 117.00201 * 209.99778 * 18 16 10 20 20 H 1.07997 * 120.00013 * 0.02562 * 19 18 16 21 21 C 1.38635 * 120.00050 * 179.97438 * 19 18 16 22 22 N 1.31583 * 119.99905 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 120.00038 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.46875 * 89.99847 * 23 21 19 25 25 H 1.48490 * 109.47041 * 210.00040 * 23 21 19 26 26 H 1.48493 * 109.47066 * 330.00416 * 23 21 19 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 33 33 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 34 34 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 36 36 H 1.09005 * 110.28537 * 299.83906 * 9 8 6 37 37 H 1.09004 * 110.28903 * 61.94760 * 9 8 6 38 38 H 1.08999 * 110.49810 * 185.92903 * 12 10 9 39 39 H 1.08999 * 110.49703 * 308.60439 * 12 10 9 40 40 H 1.08998 * 110.43221 * 119.66340 * 13 12 10 41 41 H 1.08997 * 110.42821 * 242.03887 * 13 12 10 42 42 H 0.97005 * 119.99582 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 2.0140 -0.6845 -1.1854 6 6 1.6523 -0.1729 -2.3772 7 8 0.9510 0.8182 -2.4252 8 7 2.0682 -0.7601 -3.5168 9 6 2.9189 -1.9632 -3.6300 10 6 3.1083 -2.1893 -5.1623 11 1 3.9567 -2.8051 -5.4609 12 6 1.7030 -2.6623 -5.6494 13 6 0.8011 -1.4194 -5.4641 14 6 1.7537 -0.3258 -4.9084 15 1 1.4025 0.7006 -5.0155 16 6 3.0920 -0.6948 -5.6475 17 1 3.9442 -0.1298 -5.2697 18 8 2.9698 -0.5893 -7.0673 19 6 3.5408 0.4837 -7.6532 20 1 4.0611 1.2143 -7.0518 21 6 3.4605 0.6476 -9.0275 22 7 4.0178 1.6937 -9.5990 23 14 2.5623 -0.6173 -10.0682 24 1 1.1326 -0.2341 -10.1885 25 1 3.1756 -0.6721 -11.4194 26 1 2.6646 -1.9512 -9.4236 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 -1.7488 1.2493 34 1 3.1300 -0.7207 1.2495 35 1 1.6766 -0.2073 2.1393 36 1 3.8829 -1.7908 -3.1513 37 1 2.4208 -2.8221 -3.1800 38 1 1.7408 -2.9533 -6.6991 39 1 1.3446 -3.4888 -5.0358 40 1 0.3804 -1.1087 -6.4204 41 1 0.0054 -1.6299 -4.7496 42 1 3.9612 1.8085 -10.5606 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224383682.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:48 Heat of formation + Delta-G solvation = -93.047516 kcal Electronic energy + Delta-G solvation = -23709.272364 eV Core-core repulsion = 20269.851649 eV Total energy + Delta-G solvation = -3439.420715 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.89537 -39.71964 -36.71561 -35.74488 -34.10854 -32.29172 -31.67012 -29.49449 -27.52198 -27.44676 -27.30823 -24.95496 -23.63396 -22.19289 -19.93199 -19.80968 -18.76860 -17.91662 -17.62190 -16.50853 -16.27238 -15.51287 -15.20409 -15.09165 -14.56676 -14.14735 -13.82577 -13.69940 -12.99477 -12.95535 -12.61874 -12.38911 -12.27215 -12.23511 -12.06349 -11.97205 -11.90642 -11.65402 -11.48600 -11.32037 -10.96571 -10.90603 -10.78395 -10.52006 -10.38215 -10.32884 -9.95807 -9.88640 -9.59808 -9.38863 -8.49919 -8.13304 -6.04656 -3.73498 2.18677 3.02871 3.38520 3.42119 3.56225 3.94230 4.50677 4.62782 4.65336 4.67550 4.71599 4.81452 4.90231 5.24655 5.30606 5.33069 5.40146 5.41918 5.45800 5.56444 5.58377 5.64916 5.70172 5.75744 5.77483 5.84730 5.86664 5.90830 6.05787 6.13431 6.22358 6.24536 6.32147 6.39875 6.45187 6.55161 6.59151 6.75185 7.75165 7.86417 8.30585 8.51941 9.34199 9.84803 11.07707 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.030578 B = 0.004337 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.458484 B = 6454.221897 C = 6771.192883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.184 4.184 4 C -0.139 4.139 5 O -0.364 6.364 6 C 0.666 3.334 7 O -0.571 6.571 8 N -0.600 5.600 9 C 0.115 3.885 10 C -0.115 4.115 11 H 0.118 0.882 12 C -0.111 4.111 13 C -0.126 4.126 14 C 0.125 3.875 15 H 0.120 0.880 16 C 0.102 3.898 17 H 0.069 0.931 18 O -0.299 6.299 19 C -0.364 4.364 20 H 0.081 0.919 21 C 0.048 3.952 22 N -0.910 5.910 23 Si 0.904 3.096 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.263 1.263 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.435 -8.233 18.477 20.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.241 4.241 4 C -0.196 4.196 5 O -0.280 6.280 6 C 0.422 3.578 7 O -0.461 6.461 8 N -0.342 5.342 9 C -0.008 4.008 10 C -0.134 4.134 11 H 0.136 0.864 12 C -0.149 4.149 13 C -0.164 4.164 14 C 0.023 3.977 15 H 0.138 0.862 16 C 0.041 3.959 17 H 0.087 0.913 18 O -0.213 6.213 19 C -0.442 4.442 20 H 0.099 0.901 21 C -0.150 4.150 22 N -0.554 5.554 23 Si 0.732 3.268 24 H -0.207 1.207 25 H -0.217 1.217 26 H -0.187 1.187 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.771 -7.957 18.363 20.574 hybrid contribution -0.320 -0.242 -0.290 0.495 sum -5.092 -8.199 18.074 20.489 Atomic orbital electron populations 1.22512 0.94196 1.02737 1.04544 1.22006 0.94263 0.92244 0.81659 1.22519 1.01563 0.95454 1.04559 1.21841 1.02204 1.00981 0.94592 1.86302 1.71697 1.56356 1.13602 1.17539 0.78884 0.81197 0.80195 1.90881 1.41837 1.26871 1.86536 1.47843 1.52579 1.30137 1.03690 1.22471 0.94236 0.87108 0.96946 1.24086 0.98879 0.98055 0.92349 0.86362 1.22560 0.93770 0.96792 1.01762 1.22724 0.97306 0.95118 1.01255 1.24193 0.98360 0.99144 0.75981 0.86192 1.23891 0.94180 0.93365 0.84448 0.91277 1.85249 1.76227 1.45414 1.14383 1.20488 1.32309 0.99614 0.91795 0.90141 1.24287 0.97820 0.97062 0.95808 1.69686 1.46252 1.28446 1.11041 0.86201 0.79436 0.82473 0.78726 1.20674 1.21749 1.18724 0.92360 0.89265 0.91374 0.91373 0.92212 0.89216 0.91618 0.91531 0.90337 0.91411 0.91223 0.90677 0.92380 0.89886 0.92287 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 8.37 37.16 0.31 -1.78 16 2 C 0.14 1.60 1.13 -90.62 -0.10 1.50 16 3 C -0.18 -2.19 8.37 37.16 0.31 -1.88 16 4 C -0.14 -1.19 8.85 37.16 0.33 -0.87 16 5 O -0.36 -5.33 9.55 -40.32 -0.38 -5.72 16 6 C 0.67 11.32 7.97 54.06 0.43 11.75 16 7 O -0.57 -10.84 12.20 -19.28 -0.24 -11.07 16 8 N -0.60 -9.91 2.94 -162.95 -0.48 -10.39 16 9 C 0.12 1.59 6.26 -1.71 -0.01 1.58 16 10 C -0.12 -1.76 5.20 -85.10 -0.44 -2.20 16 11 H 0.12 1.62 8.14 -51.93 -0.42 1.20 16 12 C -0.11 -1.69 5.86 -24.21 -0.14 -1.83 16 13 C -0.13 -2.09 5.99 -24.62 -0.15 -2.24 16 14 C 0.12 2.29 4.91 -62.92 -0.31 1.98 16 15 H 0.12 2.41 8.04 -51.93 -0.42 1.99 16 16 C 0.10 2.01 3.45 -22.16 -0.08 1.94 16 17 H 0.07 1.42 7.81 -51.93 -0.41 1.01 16 18 O -0.30 -7.29 7.67 -16.51 -0.13 -7.41 16 19 C -0.36 -10.27 10.30 30.88 0.32 -9.95 16 20 H 0.08 2.41 7.84 -52.49 -0.41 1.99 16 21 C 0.05 1.39 5.49 -17.51 -0.10 1.29 16 22 N -0.91 -27.67 13.96 55.48 0.77 -26.89 16 23 Si 0.90 22.35 28.62 -169.99 -4.86 17.49 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.26 -6.34 7.11 56.52 0.40 -5.94 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 1.27 5.88 -51.93 -0.31 0.97 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.33 5.88 -51.93 -0.31 1.03 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.85 7.84 -51.93 -0.41 0.44 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.06 0.74 7.87 -51.93 -0.41 0.33 16 40 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 335.58 15.07 5.06 5.06 Total: -1.00 -31.63 335.58 -6.75 -38.38 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -6.87 Total: 1.26 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 0.37 Total: -0.70 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.30 Total: -37.28 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.75 Total: -24.20 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.86 Total: 17.49 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.63 -6.75 -38.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224383682.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.666 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds