Wall clock time and date at job start Tue Mar 31 2020 06:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47039 * 2 1 4 4 C 1.53001 * 109.47072 * 239.99774 * 2 1 3 5 5 O 1.45205 * 109.46935 * 120.00131 * 2 1 3 6 6 C 1.34635 * 117.00060 * 59.99954 * 5 2 1 7 7 O 1.21514 * 119.99914 * 0.02562 * 6 5 2 8 8 N 1.34775 * 119.99852 * 179.97438 * 6 5 2 9 9 C 1.47779 * 126.65974 * 0.04371 * 8 6 5 10 10 C 1.56048 * 105.24983 * 179.07212 * 9 8 6 11 11 H 1.09003 * 116.43969 * 200.86329 * 10 9 8 12 12 C 1.56078 * 103.94929 * 71.47191 * 10 9 8 13 13 C 1.56763 * 103.15362 * 292.10301 * 12 10 9 14 14 H 1.09001 * 110.05552 * 118.25639 * 13 12 10 15 15 O 1.42893 * 110.62816 * 240.63188 * 13 12 10 16 16 C 1.34926 * 117.00357 * 265.40621 * 15 13 12 17 17 H 1.07997 * 119.99523 * 359.97438 * 16 15 13 18 18 C 1.38629 * 120.00162 * 179.97438 * 16 15 13 19 19 N 1.31582 * 119.99898 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00299 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46854 * 90.00057 * 20 18 16 22 22 H 1.48499 * 109.47526 * 210.00152 * 20 18 16 23 23 H 1.48496 * 109.47184 * 329.99924 * 20 18 16 24 24 C 1.49136 * 126.65833 * 180.02562 * 8 6 5 25 25 H 1.09007 * 115.71080 * 341.57703 * 24 8 6 26 26 C 1.56906 * 101.16508 * 214.57681 * 24 8 6 27 27 H 1.09003 * 109.47106 * 300.00062 * 1 2 3 28 28 H 1.09000 * 109.47273 * 59.99823 * 1 2 3 29 29 H 1.08996 * 109.47139 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46572 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47336 * 299.99676 * 3 2 1 32 32 H 1.08997 * 109.47384 * 60.00427 * 3 2 1 33 33 H 1.08997 * 109.47002 * 300.00545 * 4 2 1 34 34 H 1.09000 * 109.46743 * 60.00078 * 4 2 1 35 35 H 1.08995 * 109.47160 * 179.97438 * 4 2 1 36 36 H 1.09001 * 110.28550 * 298.01127 * 9 8 6 37 37 H 1.09002 * 110.29234 * 60.03086 * 9 8 6 38 38 H 1.09004 * 110.49535 * 51.39341 * 12 10 9 39 39 H 1.08997 * 110.49666 * 174.06903 * 12 10 9 40 40 H 0.97000 * 120.00514 * 179.97438 * 19 18 16 41 41 H 1.09001 * 112.19415 * 63.43086 * 26 24 8 42 42 H 1.08995 * 112.20001 * 190.41548 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5035 8 7 2.0680 -2.6657 2.4167 9 6 2.9184 -2.1622 3.5153 10 6 3.0689 -3.3625 4.5011 11 1 3.3521 -3.1173 5.5247 12 6 4.0024 -4.3573 3.7429 13 6 3.1128 -4.8393 2.5455 14 1 3.5753 -4.5582 1.5993 15 8 2.9130 -6.2529 2.6039 16 6 3.7576 -7.0212 1.8850 17 1 4.5405 -6.5615 1.3002 18 6 3.6205 -8.4007 1.8971 19 7 4.4446 -9.1499 1.1964 20 14 2.2668 -9.1959 2.9092 21 1 1.0425 -9.3302 2.0796 22 1 2.7097 -10.5400 3.3593 23 1 1.9721 -8.3498 4.0934 24 6 1.7588 -4.0900 2.7329 25 1 0.9053 -4.5169 2.2062 26 6 1.6655 -4.0403 4.2984 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7209 -1.2495 36 1 3.8941 -1.8637 3.1316 37 1 2.4350 -1.3212 4.0125 38 1 4.9003 -3.8473 3.3936 39 1 4.2651 -5.1985 4.3843 40 1 4.3489 -10.1151 1.2051 41 1 0.8483 -3.4063 4.6422 42 1 1.6214 -5.0357 4.7401 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224388098.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:01 Heat of formation + Delta-G solvation = -93.701692 kcal Electronic energy + Delta-G solvation = -23693.814521 eV Core-core repulsion = 20254.365439 eV Total energy + Delta-G solvation = -3439.449082 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.90228 -39.69011 -36.70165 -35.93676 -34.10275 -32.19849 -31.63564 -28.97391 -27.55972 -27.50294 -27.41999 -24.80080 -24.11356 -21.94478 -20.16708 -19.79426 -18.76979 -17.90114 -17.64423 -16.49237 -16.27902 -15.53133 -15.20746 -15.04773 -14.47453 -14.01092 -13.83526 -13.64032 -13.44725 -12.92228 -12.60459 -12.36817 -12.27115 -12.24032 -11.96583 -11.90590 -11.80743 -11.61481 -11.38859 -11.30460 -11.16672 -10.86487 -10.71569 -10.61145 -10.48034 -10.34433 -9.93043 -9.89099 -9.60809 -9.27992 -8.52778 -8.15417 -5.99014 -3.66985 2.15071 3.01035 3.42498 3.46318 3.60117 3.91094 4.53293 4.56471 4.64352 4.67611 4.69901 4.81094 4.83092 5.15340 5.30363 5.34151 5.35736 5.42431 5.44971 5.47823 5.57764 5.60157 5.66748 5.66848 5.79714 5.84159 5.87345 5.99346 6.03930 6.15753 6.18891 6.23532 6.27679 6.36511 6.42754 6.52187 6.63015 6.72645 7.70332 7.92313 8.36655 8.50032 9.40330 9.92447 11.13722 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.023146 B = 0.004668 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.431208 B = 5997.480225 C = 6482.253744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.139 4.139 4 C -0.185 4.185 5 O -0.364 6.364 6 C 0.667 3.333 7 O -0.566 6.566 8 N -0.602 5.602 9 C 0.111 3.889 10 C -0.112 4.112 11 H 0.114 0.886 12 C -0.142 4.142 13 C 0.096 3.904 14 H 0.054 0.946 15 O -0.315 6.315 16 C -0.356 4.356 17 H 0.078 0.922 18 C 0.045 3.955 19 N -0.913 5.913 20 Si 0.906 3.094 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.264 1.264 24 C 0.150 3.850 25 H 0.125 0.875 26 C -0.130 4.130 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.269 0.731 41 H 0.072 0.928 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.155 20.379 3.589 21.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.196 4.196 4 C -0.242 4.242 5 O -0.279 6.279 6 C 0.423 3.577 7 O -0.455 6.455 8 N -0.344 5.344 9 C -0.011 4.011 10 C -0.130 4.130 11 H 0.132 0.868 12 C -0.180 4.180 13 C 0.036 3.964 14 H 0.072 0.928 15 O -0.230 6.230 16 C -0.434 4.434 17 H 0.096 0.904 18 C -0.153 4.153 19 N -0.558 5.558 20 Si 0.733 3.267 21 H -0.207 1.207 22 H -0.218 1.218 23 H -0.188 1.188 24 C 0.049 3.951 25 H 0.143 0.857 26 C -0.168 4.168 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.517 20.095 3.257 21.092 hybrid contribution -0.253 -0.266 0.080 0.376 sum -5.771 19.829 3.337 20.920 Atomic orbital electron populations 1.22513 0.94166 1.05168 1.02145 1.22024 0.94273 0.91407 0.82457 1.21839 1.02221 0.92683 1.02850 1.22523 1.01631 1.03754 0.96264 1.86296 1.71669 1.23837 1.46125 1.17504 0.78865 0.80151 0.81203 1.90908 1.41662 1.70406 1.42555 1.47855 1.52888 1.12728 1.20930 1.22512 0.94466 0.96641 0.87527 1.23912 0.96625 0.94459 0.98011 0.86763 1.23709 0.97288 0.98625 0.98331 1.23492 0.92308 0.84084 0.96563 0.92780 1.85211 1.56019 1.12400 1.69371 1.20428 1.10070 0.88703 1.24197 0.90413 1.24301 0.98088 0.95017 0.97849 1.69686 1.38274 1.05195 1.42665 0.86176 0.81596 0.77822 0.81068 1.20720 1.21802 1.18824 1.23664 0.98779 0.77430 0.95195 0.85742 1.23847 0.96308 1.02021 0.94579 0.92368 0.91323 0.89255 0.91529 0.90297 0.91641 0.89141 0.91322 0.92172 0.91218 0.91571 0.91675 0.89956 0.92116 0.90940 0.88416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 8.37 37.16 0.31 -1.80 16 2 C 0.14 1.64 1.13 -90.62 -0.10 1.53 16 3 C -0.14 -1.21 8.85 37.16 0.33 -0.88 16 4 C -0.18 -2.31 8.37 37.16 0.31 -2.00 16 5 O -0.36 -5.36 9.55 -40.31 -0.38 -5.74 16 6 C 0.67 11.42 7.97 54.05 0.43 11.85 16 7 O -0.57 -10.99 12.20 -19.28 -0.24 -11.22 16 8 N -0.60 -9.73 2.93 -162.85 -0.48 -10.21 16 9 C 0.11 1.44 6.25 -1.71 -0.01 1.43 16 10 C -0.11 -1.43 5.28 -85.08 -0.45 -1.88 16 11 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 12 C -0.14 -2.37 6.20 -23.05 -0.14 -2.51 16 13 C 0.10 1.99 2.94 -23.16 -0.07 1.92 16 14 H 0.05 1.23 7.81 -51.93 -0.41 0.82 16 15 O -0.32 -8.08 8.32 -16.50 -0.14 -8.21 16 16 C -0.36 -10.42 10.28 30.88 0.32 -10.10 16 17 H 0.08 2.41 7.87 -52.49 -0.41 2.00 16 18 C 0.04 1.32 5.49 -17.51 -0.10 1.23 16 19 N -0.91 -28.40 13.96 55.48 0.77 -27.62 16 20 Si 0.91 23.01 28.62 -169.99 -4.86 18.14 16 21 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.26 -6.52 7.11 56.52 0.40 -6.11 16 24 C 0.15 2.67 4.79 -62.82 -0.30 2.36 16 25 H 0.12 2.37 8.04 -51.92 -0.42 1.95 16 26 C -0.13 -1.85 6.62 -22.36 -0.15 -2.00 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.09 1.28 5.88 -51.93 -0.31 0.98 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 1.42 5.88 -51.93 -0.31 1.11 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.88 7.82 -51.93 -0.41 0.47 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.02 7.86 -51.93 -0.41 0.61 16 39 H 0.08 1.49 8.03 -51.93 -0.42 1.07 16 40 H 0.27 7.83 8.31 -40.82 -0.34 7.49 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 LS Contribution 336.52 15.07 5.07 5.07 Total: -1.00 -33.10 336.52 -6.74 -39.83 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.86 Total: 0.81 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 0.38 Total: -0.86 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.30 Total: -37.83 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.76 Total: -25.17 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.86 Total: 18.14 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.10 -6.74 -39.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224388098.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.869 kcal (2) G-P(sol) polarization free energy of solvation -33.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds