Wall clock time and date at job start Tue Mar 31 2020 05:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.47480 * 111.00058 * 265.97169 * 10 9 7 12 12 C 1.53511 * 87.92978 * 221.29855 * 11 10 9 13 13 O 1.42903 * 114.16593 * 272.37549 * 12 11 10 14 14 C 1.42906 * 113.99676 * 243.84096 * 13 12 11 15 15 C 1.53004 * 109.46646 * 180.02562 * 14 13 12 16 16 C 1.53851 * 113.60600 * 272.56270 * 15 14 13 17 17 C 1.53388 * 86.97327 * 220.29958 * 16 15 14 18 18 C 1.53384 * 87.47487 * 25.21557 * 17 16 15 19 19 O 1.43327 * 114.56572 * 141.18975 * 17 16 15 20 20 C 1.44891 * 104.66352 * 106.52338 * 19 17 16 21 21 C 1.54947 * 101.79855 * 35.66840 * 20 19 17 22 22 O 1.42942 * 114.79389 * 268.94578 * 17 16 15 23 23 C 1.47483 * 110.99717 * 169.99804 * 10 9 7 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 26 26 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 27 27 H 1.09004 * 113.47132 * 336.06118 * 11 10 9 28 28 H 1.09000 * 113.47538 * 106.52857 * 11 10 9 29 29 H 1.08997 * 114.34366 * 139.68828 * 12 11 10 30 30 H 1.09000 * 109.47344 * 300.00425 * 14 13 12 31 31 H 1.08994 * 109.46979 * 60.00477 * 14 13 12 32 32 H 1.09001 * 112.84333 * 43.83763 * 15 14 13 33 33 H 1.09003 * 113.62894 * 334.81865 * 16 15 14 34 34 H 1.09004 * 113.63035 * 105.77279 * 16 15 14 35 35 H 1.09007 * 113.63128 * 220.26246 * 18 17 16 36 36 H 1.09000 * 113.63210 * 89.31114 * 18 17 16 37 37 H 1.08992 * 110.96487 * 277.53541 * 20 19 17 38 38 H 1.09002 * 110.96055 * 153.79212 * 20 19 17 39 39 H 1.08998 * 110.69212 * 206.27677 * 21 20 19 40 40 H 1.09004 * 110.68940 * 83.07689 * 21 20 19 41 41 H 1.09000 * 113.47556 * 253.46531 * 23 10 9 42 42 H 1.08997 * 113.47949 * 23.93922 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.4756 -4.0803 -1.3740 12 6 2.4190 -5.5182 -0.8392 13 8 3.6677 -6.0089 -0.3471 14 6 4.1872 -7.1179 -1.0835 15 6 5.5185 -7.5579 -0.4712 16 6 6.7350 -6.8024 -1.0339 17 6 7.4754 -8.1456 -1.0151 18 6 6.1043 -8.8257 -1.1167 19 8 8.3361 -8.3673 -2.1395 20 6 9.6764 -8.2093 -1.6123 21 6 9.5296 -8.8058 -0.1898 22 8 8.1926 -8.4180 0.1910 23 6 1.5184 -4.8986 0.2386 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 0.8897 26 1 0.6240 -2.5568 -0.8903 27 1 1.6756 -3.8466 -2.0765 28 1 3.4598 -3.7930 -1.7440 29 1 1.9088 -6.2223 -1.4965 30 1 3.4782 -7.9449 -1.0434 31 1 4.3437 -6.8236 -2.1213 32 1 5.4917 -7.5951 0.6178 33 1 6.5769 -6.4046 -2.0363 34 1 7.1486 -6.0657 -0.3451 35 1 6.0109 -9.7159 -0.4946 36 1 5.7718 -8.9876 -2.1421 37 1 9.9561 -7.1569 -1.5669 38 1 10.3965 -8.7776 -2.2010 39 1 10.2644 -8.3712 0.4879 40 1 9.6229 -9.8915 -0.2159 41 1 1.6915 -5.3047 1.2352 42 1 0.4631 -4.8832 -0.0336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224637996.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:27 Heat of formation + Delta-G solvation = -63.795609 kcal Electronic energy + Delta-G solvation = -22189.499319 eV Core-core repulsion = 18751.347062 eV Total energy + Delta-G solvation = -3438.152257 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.18784 -39.51199 -37.74028 -35.79223 -35.34640 -32.77603 -30.03265 -29.11914 -27.20565 -26.11285 -25.35394 -24.91415 -23.65590 -22.25540 -21.62879 -19.83500 -19.23441 -17.55968 -16.89385 -16.59796 -16.23536 -16.02950 -15.47742 -15.27225 -14.96230 -14.64861 -14.24951 -13.93845 -13.66352 -13.41363 -13.09552 -13.00088 -12.61168 -12.55394 -12.12113 -12.06377 -11.87826 -11.38918 -11.23218 -11.06942 -10.91149 -10.81125 -10.54668 -10.46017 -10.43641 -10.15705 -9.71495 -9.58821 -9.19929 -9.07537 -8.38303 -7.73293 -5.99274 -3.99729 3.05096 3.35636 3.40801 3.44076 3.45997 3.70262 4.14841 4.30376 4.43332 4.46982 4.50848 4.63691 4.72219 4.81181 4.93958 5.04618 5.13552 5.20264 5.34054 5.34707 5.36164 5.41134 5.45297 5.46964 5.57376 5.62203 5.85234 5.92752 5.94101 6.03221 6.16654 6.23575 6.32134 6.47201 6.74732 6.84982 7.22208 7.55382 7.72816 7.93414 8.17999 8.53573 9.08391 9.64102 11.11963 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.024193 B = 0.002918 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.084063 B = 9593.352707 C =10392.427564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.052 3.948 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.273 1.273 6 H -0.287 1.287 7 C -0.501 4.501 8 H 0.063 0.937 9 C 0.156 3.844 10 N -0.455 5.455 11 C -0.008 4.008 12 C 0.055 3.945 13 O -0.347 6.347 14 C 0.072 3.928 15 C -0.098 4.098 16 C -0.146 4.146 17 C 0.230 3.770 18 C -0.128 4.128 19 O -0.365 6.365 20 C 0.014 3.986 21 C 0.019 3.981 22 O -0.358 6.358 23 C -0.007 4.007 24 H 0.261 0.739 25 H 0.028 0.972 26 H 0.002 0.998 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.506 -20.892 -4.414 26.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.148 4.148 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.198 1.198 6 H -0.213 1.213 7 C -0.540 4.540 8 H 0.082 0.918 9 C 0.029 3.971 10 N -0.178 5.178 11 C -0.138 4.138 12 C -0.004 4.004 13 O -0.265 6.265 14 C -0.005 4.005 15 C -0.116 4.116 16 C -0.183 4.183 17 C 0.153 3.847 18 C -0.166 4.166 19 O -0.285 6.285 20 C -0.062 4.062 21 C -0.057 4.057 22 O -0.279 6.279 23 C -0.137 4.137 24 H 0.070 0.930 25 H 0.046 0.954 26 H 0.020 0.980 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.119 0.881 37 H 0.096 0.904 38 H 0.126 0.874 39 H 0.119 0.881 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.827 -20.455 -3.814 26.143 hybrid contribution -0.330 0.800 -0.701 1.114 sum 15.497 -19.655 -4.515 25.434 Atomic orbital electron populations 1.69961 1.06066 1.26720 1.51470 1.25016 0.94898 0.99388 0.95534 0.86470 0.79716 0.82936 0.78143 1.20611 1.19822 1.21341 1.21125 0.93647 0.89777 1.49430 0.91850 1.20298 0.90782 0.89468 0.96512 1.69032 1.33133 1.01326 1.14311 1.24219 1.02232 0.93208 0.94126 1.23305 0.85592 0.94632 0.96847 1.87999 1.36166 1.47934 1.54439 1.22468 0.94054 0.89050 0.94931 1.22262 0.92749 0.95105 1.01489 1.23795 0.95246 0.96312 1.02993 1.24405 0.88493 0.96844 0.74997 1.23466 0.92329 0.98213 1.02611 1.89215 1.15927 1.91722 1.31617 1.24393 0.85798 1.02017 0.93995 1.24263 0.84667 1.00671 0.96113 1.88850 1.23332 1.87975 1.27750 1.24033 0.96240 0.93682 0.99715 0.92987 0.95370 0.98004 0.91324 0.90341 0.91189 0.93276 0.93194 0.87535 0.88070 0.89819 0.89751 0.88066 0.90382 0.87433 0.88061 0.90516 0.90132 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 2 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.50 -14.85 9.39 -34.44 -0.32 -15.17 16 8 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 9 C 0.16 4.23 4.57 -4.98 -0.02 4.21 16 10 N -0.46 -10.60 6.32 -246.08 -1.55 -12.16 16 11 C -0.01 -0.16 7.55 -7.54 -0.06 -0.22 16 12 C 0.05 0.90 4.66 -26.20 -0.12 0.78 16 13 O -0.35 -5.74 10.39 -35.23 -0.37 -6.10 16 14 C 0.07 0.88 5.62 37.16 0.21 1.09 16 15 C -0.10 -1.12 3.99 -89.73 -0.36 -1.48 16 16 C -0.15 -1.70 7.37 -26.09 -0.19 -1.89 16 17 C 0.23 2.51 1.84 -26.33 -0.05 2.46 16 18 C -0.13 -1.25 7.38 -26.09 -0.19 -1.44 16 19 O -0.36 -3.88 11.42 -59.03 -0.67 -4.56 16 20 C 0.01 0.10 7.96 38.19 0.30 0.41 16 21 C 0.02 0.14 8.08 38.19 0.31 0.45 16 22 O -0.36 -4.00 11.28 -59.03 -0.67 -4.66 16 23 C -0.01 -0.13 7.52 -7.53 -0.06 -0.19 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.03 0.81 8.08 -51.92 -0.42 0.39 16 26 H 0.00 0.06 7.30 -51.93 -0.38 -0.32 16 27 H 0.07 1.32 7.42 -51.93 -0.39 0.94 16 28 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 29 H 0.07 0.94 7.88 -51.93 -0.41 0.53 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.57 7.85 -51.93 -0.41 0.16 16 32 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.10 1.14 7.90 -51.93 -0.41 0.73 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.08 0.76 8.14 -51.92 -0.42 0.33 16 36 H 0.10 0.88 8.10 -51.93 -0.42 0.46 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 42 H 0.07 1.23 7.91 -51.93 -0.41 0.82 16 LS Contribution 344.91 15.07 5.20 5.20 Total: -1.00 -33.80 344.91 -10.01 -43.81 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -7.01 Total: -2.57 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -0.65 Total: -9.57 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: -0.82 Total: -38.89 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -1.71 Total: -15.32 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.80 -10.01 -43.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224637996.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.986 kcal (2) G-P(sol) polarization free energy of solvation -33.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds