Wall clock time and date at job start Tue Mar 31 2020 05:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31933 * 119.64184 * 2 1 4 4 C 1.31990 * 121.74518 * 180.02562 * 3 2 1 5 5 F 1.35101 * 119.59271 * 179.97438 * 4 3 2 6 6 C 1.38559 * 120.81867 * 0.02562 * 4 3 2 7 7 C 1.38451 * 119.19928 * 359.97438 * 6 4 3 8 8 C 1.38587 * 119.64266 * 180.02562 * 2 1 3 9 9 O 1.35958 * 120.43883 * 359.97438 * 8 2 1 10 10 C 1.42906 * 116.99949 * 185.61785 * 9 8 2 11 11 H 1.08998 * 109.47007 * 33.58341 * 10 9 8 12 12 C 1.50701 * 109.46954 * 273.58609 * 10 9 8 13 13 H 1.07995 * 120.00209 * 119.99601 * 12 10 9 14 14 C 1.37878 * 119.99724 * 300.00157 * 12 10 9 15 15 N 1.31509 * 120.00433 * 359.97438 * 14 12 10 16 16 Si 1.86810 * 119.99966 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.46995 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47149 * 119.99716 * 16 14 12 19 19 H 1.48501 * 109.46766 * 239.99791 * 16 14 12 20 20 C 1.52998 * 109.47492 * 153.58576 * 10 9 8 21 21 N 1.46897 * 109.47138 * 294.51830 * 20 10 9 22 22 C 1.46908 * 109.47112 * 65.29629 * 21 20 10 23 23 C 1.46898 * 109.47325 * 185.29611 * 21 20 10 24 24 C 1.46901 * 109.46984 * 305.30024 * 21 20 10 25 25 H 1.08998 * 109.47341 * 89.99589 * 1 2 3 26 26 H 1.08998 * 109.47432 * 210.00186 * 1 2 3 27 27 H 1.09001 * 109.47272 * 329.99621 * 1 2 3 28 28 H 1.08005 * 120.39632 * 179.97438 * 6 4 3 29 29 H 1.07996 * 120.79762 * 179.97438 * 7 6 4 30 30 H 0.97000 * 120.00353 * 180.02562 * 15 14 12 31 31 H 1.09006 * 109.47014 * 54.51675 * 20 10 9 32 32 H 1.09003 * 109.47186 * 174.51665 * 20 10 9 33 33 H 1.08999 * 109.46889 * 52.45066 * 22 21 20 34 34 H 1.08997 * 109.46894 * 172.44718 * 22 21 20 35 35 H 1.09003 * 109.46901 * 292.44490 * 22 21 20 36 36 H 1.09001 * 109.47023 * 60.00237 * 23 21 20 37 37 H 1.09003 * 109.47474 * 179.97438 * 23 21 20 38 38 H 1.08999 * 109.47245 * 300.00251 * 23 21 20 39 39 H 1.08996 * 109.47380 * 59.99766 * 24 21 20 40 40 H 1.09003 * 109.46970 * 180.02562 * 24 21 20 41 41 H 1.09001 * 109.47096 * 299.99599 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1594 1.1467 0.0000 4 6 3.4784 1.1951 -0.0005 5 9 4.1021 2.3936 -0.0010 6 6 4.2315 0.0320 -0.0016 7 6 3.5841 -1.1918 -0.0016 8 6 2.1924 -1.2045 -0.0005 9 8 1.5143 -2.3829 -0.0005 10 6 2.2890 -3.5773 0.1235 11 1 3.1537 -3.3851 0.7587 12 6 2.7554 -4.0174 -1.2402 13 1 3.8118 -4.0967 -1.4501 14 6 1.8334 -4.3187 -2.2201 15 7 0.5470 -4.2225 -1.9645 16 14 2.4114 -4.8649 -3.9104 17 1 3.8958 -4.8922 -3.9410 18 1 1.8849 -6.2232 -4.1986 19 1 1.9130 -3.9130 -4.9354 20 6 1.4314 -4.6789 0.7493 21 7 1.0858 -4.3069 2.1277 22 6 0.2266 -3.1154 2.1126 23 6 0.3710 -5.4179 2.7702 24 6 2.3141 -4.0153 2.8788 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 5.3105 0.0796 -0.0024 29 1 4.1456 -2.1143 -0.0028 30 1 -0.1017 -4.4348 -2.6537 31 1 0.5185 -4.8036 0.1669 32 1 1.9897 -5.6151 0.7547 33 1 -0.6191 -3.2857 1.4463 34 1 -0.1389 -2.9182 3.1204 35 1 0.8003 -2.2583 1.7599 36 1 1.0085 -6.3020 2.7815 37 1 0.1149 -5.1421 3.7932 38 1 -0.5404 -5.6343 2.2129 39 1 2.8444 -3.1910 2.4021 40 1 2.0577 -3.7397 3.9018 41 1 2.9516 -4.8994 2.8901 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228552071.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:53 Heat of formation + Delta-G solvation = 63.471990 kcal Electronic energy + Delta-G solvation = -24119.171310 eV Core-core repulsion = 20647.140408 eV Total energy + Delta-G solvation = -3472.030902 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.156 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.60510 -43.50369 -41.29391 -38.76622 -34.94416 -33.94058 -32.31917 -31.25600 -30.48724 -30.36893 -28.15282 -28.00695 -25.31956 -24.35820 -23.35761 -22.39548 -19.46007 -19.10616 -18.87544 -18.47490 -18.19228 -17.88741 -17.42861 -16.83856 -16.29046 -15.71665 -15.48376 -15.14330 -15.00437 -14.73665 -14.65710 -14.47456 -14.21296 -14.14966 -14.09569 -13.89294 -13.87580 -13.56087 -13.38193 -13.14312 -12.95275 -12.65898 -12.56840 -12.27223 -11.86387 -11.39679 -11.03665 -10.57371 -10.53048 -10.28171 -8.86051 -7.91891 -6.14845 0.15111 0.19829 0.34898 1.99294 2.10232 2.17661 2.19517 2.22292 2.26590 2.46316 2.75335 2.86792 2.90524 3.04579 3.09878 3.30197 3.38597 3.51768 3.56240 3.61472 3.63866 3.66858 3.70738 3.81624 3.99302 4.04074 4.09055 4.14191 4.25430 4.50571 4.67274 4.75028 4.86188 4.89688 5.10264 5.24136 5.31753 5.72024 5.92083 6.10180 6.50955 6.90772 7.04998 7.71556 9.10414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.120 3.880 3 N -0.481 5.481 4 C 0.258 3.742 5 F -0.118 7.118 6 C -0.159 4.159 7 C -0.133 4.133 8 C 0.096 3.904 9 O -0.292 6.292 10 C 0.189 3.811 11 H 0.048 0.952 12 C -0.568 4.568 13 H 0.080 0.920 14 C 0.094 3.906 15 N -0.857 5.857 16 Si 0.903 3.097 17 H -0.266 1.266 18 H -0.274 1.274 19 H -0.273 1.273 20 C -0.001 4.001 21 N -0.273 5.273 22 C -0.047 4.047 23 C -0.041 4.041 24 C -0.047 4.047 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.145 0.855 29 H 0.154 0.846 30 H 0.280 0.720 31 H 0.161 0.839 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.101 0.899 35 H 0.132 0.868 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.111 0.889 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.508 -6.538 16.071 17.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.019 4.019 3 N -0.196 5.196 4 C 0.104 3.896 5 F -0.097 7.097 6 C -0.180 4.180 7 C -0.159 4.159 8 C 0.046 3.954 9 O -0.204 6.204 10 C 0.135 3.865 11 H 0.065 0.935 12 C -0.604 4.604 13 H 0.098 0.902 14 C -0.117 4.117 15 N -0.491 5.491 16 Si 0.728 3.272 17 H -0.190 1.190 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.120 4.120 21 N 0.069 4.931 22 C -0.188 4.188 23 C -0.182 4.182 24 C -0.189 4.189 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.163 0.837 29 H 0.172 0.828 30 H 0.090 0.910 31 H 0.178 0.822 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.119 0.881 35 H 0.150 0.850 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.342 -5.818 15.982 17.333 hybrid contribution 1.138 -0.800 -1.202 1.839 sum -2.204 -6.618 14.780 16.343 Atomic orbital electron populations 1.20585 0.87661 1.02764 1.03855 1.20391 0.96910 0.84432 1.00189 1.66785 1.08615 1.29944 1.14286 1.17918 0.87400 0.81031 1.03224 1.91609 1.80459 1.43823 1.93857 1.21688 1.01873 0.91121 1.03318 1.21689 0.93692 0.98846 1.01712 1.19718 0.90976 0.87902 0.96794 1.86330 1.36940 1.11641 1.85528 1.20432 0.87800 0.80341 0.97952 0.93474 1.21247 0.94577 1.50075 0.94539 0.90183 1.25022 0.94658 0.91939 1.00094 1.69593 1.00789 1.42923 1.35780 0.86282 0.79904 0.79072 0.81893 1.18985 1.19913 1.19851 1.24876 1.09117 1.02299 0.75660 1.46392 1.14457 1.15008 1.17266 1.24429 0.98785 0.88896 1.06658 1.24013 1.01559 0.90812 1.01861 1.24070 0.87550 1.07787 0.99521 0.90022 0.90481 0.90761 0.83687 0.82838 0.90961 0.82158 0.85765 0.85961 0.88061 0.85021 0.86793 0.87147 0.86413 0.86547 0.87039 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.06 9.95 36.00 0.36 0.30 16 2 C 0.12 0.36 6.79 -82.42 -0.56 -0.20 16 3 N -0.48 -2.52 10.28 -9.71 -0.10 -2.62 16 4 C 0.26 1.21 8.41 -17.37 -0.15 1.06 16 5 F -0.12 -0.66 17.29 2.25 0.04 -0.62 16 6 C -0.16 -0.34 10.08 -39.38 -0.40 -0.73 16 7 C -0.13 -0.18 8.84 -39.15 -0.35 -0.53 16 8 C 0.10 0.17 6.02 -39.10 -0.24 -0.07 16 9 O -0.29 -0.09 5.21 -19.61 -0.10 -0.19 16 10 C 0.19 -0.18 1.34 -27.88 -0.04 -0.22 16 11 H 0.05 -0.16 4.02 -51.93 -0.21 -0.37 16 12 C -0.57 -2.84 8.18 -34.44 -0.28 -3.12 16 13 H 0.08 0.50 7.81 -52.49 -0.41 0.09 16 14 C 0.09 0.68 5.24 -17.82 -0.09 0.59 16 15 N -0.86 -5.99 10.93 55.43 0.61 -5.38 16 16 Si 0.90 7.28 29.54 -169.99 -5.02 2.26 16 17 H -0.27 -2.31 7.11 56.52 0.40 -1.91 16 18 H -0.27 -2.34 7.11 56.52 0.40 -1.94 16 19 H -0.27 -2.70 7.11 56.52 0.40 -2.30 16 20 C 0.00 0.01 3.57 -3.83 -0.01 -0.01 16 21 N -0.27 2.98 0.05 -395.62 -0.02 2.96 16 22 C -0.05 0.46 6.99 60.07 0.42 0.88 16 23 C -0.04 0.55 8.00 60.06 0.48 1.03 16 24 C -0.05 0.58 7.52 60.07 0.45 1.03 16 25 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.08 -0.15 6.55 -51.93 -0.34 -0.49 16 27 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 28 H 0.15 -0.01 8.06 -52.48 -0.42 -0.43 16 29 H 0.15 0.00 5.88 -52.49 -0.31 -0.31 16 30 H 0.28 2.19 8.31 -40.82 -0.34 1.85 16 31 H 0.16 -0.40 6.08 -51.93 -0.32 -0.72 16 32 H 0.12 -0.80 8.08 -51.93 -0.42 -1.22 16 33 H 0.12 -1.06 7.97 -51.93 -0.41 -1.48 16 34 H 0.10 -1.28 8.04 -51.93 -0.42 -1.70 16 35 H 0.13 -0.96 4.27 -51.93 -0.22 -1.18 16 36 H 0.11 -1.60 8.11 -51.93 -0.42 -2.02 16 37 H 0.11 -1.67 8.09 -51.93 -0.42 -2.09 16 38 H 0.12 -1.51 8.14 -51.93 -0.42 -1.94 16 39 H 0.12 -1.20 5.89 -51.93 -0.31 -1.50 16 40 H 0.11 -1.58 8.14 -51.93 -0.42 -2.00 16 41 H 0.12 -1.54 8.14 -51.93 -0.42 -1.96 16 LS Contribution 323.40 15.07 4.87 4.87 Total: 0.00 -16.99 323.40 -6.00 -22.99 By element: Atomic # 1 Polarization: -18.40 SS G_CDS: -5.87 Total: -24.28 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -0.40 Total: 0.01 kcal Atomic # 7 Polarization: -5.52 SS G_CDS: 0.49 Total: -5.03 kcal Atomic # 8 Polarization: -0.09 SS G_CDS: -0.10 Total: -0.19 kcal Atomic # 9 Polarization: -0.66 SS G_CDS: 0.04 Total: -0.62 kcal Atomic # 14 Polarization: 7.28 SS G_CDS: -5.02 Total: 2.26 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -16.99 -6.00 -22.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228552071.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.459 kcal (2) G-P(sol) polarization free energy of solvation -16.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds