Wall clock time and date at job start Tue Mar 31 2020 05:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38144 * 120.36277 * 2 1 4 4 N 1.31933 * 120.91035 * 180.02562 * 3 2 1 5 5 C 1.31972 * 121.74369 * 359.97438 * 4 3 2 6 6 F 1.35101 * 119.68589 * 180.02562 * 5 4 3 7 7 C 1.39021 * 120.63145 * 0.02562 * 5 4 3 8 8 O 1.35967 * 120.48235 * 179.70669 * 7 5 4 9 9 C 1.42894 * 116.99843 * 179.88971 * 8 7 5 10 10 H 1.09000 * 109.47475 * 35.52144 * 9 8 7 11 11 C 1.50702 * 109.47009 * 275.52017 * 9 8 7 12 12 H 1.08000 * 120.00040 * 0.02562 * 11 9 8 13 13 C 1.37880 * 119.99796 * 180.02562 * 11 9 8 14 14 N 1.31512 * 120.00263 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99812 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47238 * 89.99638 * 15 13 11 17 17 H 1.48501 * 109.46761 * 209.99925 * 15 13 11 18 18 H 1.48499 * 109.46966 * 329.99693 * 15 13 11 19 19 C 1.53004 * 109.47160 * 155.52574 * 9 8 7 20 20 N 1.46904 * 109.46542 * 294.43824 * 19 9 8 21 21 C 1.46894 * 109.47392 * 65.76729 * 20 19 9 22 22 C 1.46903 * 109.46587 * 185.76444 * 20 19 9 23 23 C 1.46898 * 109.47217 * 305.76005 * 20 19 9 24 24 C 1.38655 * 120.36612 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47019 * 90.00344 * 1 2 3 26 26 H 1.08998 * 109.46952 * 210.00143 * 1 2 3 27 27 H 1.08999 * 109.46990 * 330.00308 * 1 2 3 28 28 H 1.08001 * 119.54295 * 0.02562 * 3 2 1 29 29 H 0.96999 * 120.00263 * 180.02562 * 14 13 11 30 30 H 1.09004 * 109.47034 * 54.43116 * 19 9 8 31 31 H 1.08999 * 109.47155 * 174.44168 * 19 9 8 32 32 H 1.08999 * 109.47218 * 52.95423 * 21 20 19 33 33 H 1.08996 * 109.47183 * 172.95466 * 21 20 19 34 34 H 1.08996 * 109.46947 * 292.95338 * 21 20 19 35 35 H 1.08998 * 109.47599 * 60.00040 * 22 20 19 36 36 H 1.09000 * 109.46979 * 179.97438 * 22 20 19 37 37 H 1.09001 * 109.47532 * 299.99792 * 22 20 19 38 38 H 1.09004 * 109.46756 * 69.25418 * 23 20 19 39 39 H 1.08998 * 109.47355 * 189.25456 * 23 20 19 40 40 H 1.08997 * 109.47630 * 309.25954 * 23 20 19 41 41 H 1.07999 * 120.79932 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2052 1.1920 0.0000 4 7 3.5245 1.2046 -0.0005 5 6 4.2295 0.0890 -0.0005 6 9 5.5791 0.1504 -0.0005 7 6 3.5967 -1.1489 -0.0005 8 8 4.3260 -2.2964 -0.0066 9 6 3.5995 -3.5268 -0.0037 10 1 2.6908 -3.4137 -0.5950 11 6 3.2352 -3.8917 1.4124 12 1 3.5287 -3.2481 2.2284 13 6 2.5271 -5.0473 1.6660 14 7 2.1692 -5.8308 0.6723 15 14 2.0748 -5.4992 3.4212 16 1 0.7539 -4.9108 3.7592 17 1 2.0060 -6.9771 3.5497 18 1 3.1051 -4.9691 4.3500 19 6 4.4670 -4.6328 -0.6081 20 7 4.7115 -4.3426 -2.0273 21 6 5.5245 -3.1248 -2.1452 22 6 5.4261 -5.4697 -2.6414 23 6 3.4286 -4.1433 -2.7145 24 6 2.2079 -1.1963 -0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6637 2.1264 0.0004 29 1 1.6707 -6.6435 0.8507 30 1 5.4181 -4.6793 -0.0777 31 1 3.9524 -5.5892 -0.5163 32 1 6.4204 -3.2253 -1.5325 33 1 5.8110 -2.9786 -3.1866 34 1 4.9453 -2.2669 -1.8038 35 1 4.8229 -6.3733 -2.5540 36 1 5.6071 -5.2546 -3.6945 37 1 6.3781 -5.6176 -2.1316 38 1 2.9740 -3.2134 -2.3728 39 1 3.5967 -4.0917 -3.7902 40 1 2.7630 -4.9769 -2.4904 41 1 1.6870 -2.1424 -0.0014 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228586445.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:17 Heat of formation + Delta-G solvation = 57.164572 kcal Electronic energy + Delta-G solvation = -24057.095824 eV Core-core repulsion = 20584.791412 eV Total energy + Delta-G solvation = -3472.304412 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.156 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.70650 -43.44398 -41.35033 -39.19571 -35.17409 -34.44451 -32.29023 -31.02984 -30.39194 -30.27585 -28.22476 -27.78458 -25.56659 -24.69306 -23.10184 -22.51223 -19.34349 -19.22884 -18.80919 -18.62081 -18.30778 -18.03233 -17.69841 -17.04562 -16.07653 -15.73098 -15.51108 -15.20625 -15.08767 -14.77475 -14.68534 -14.56995 -14.29701 -14.11816 -14.00471 -13.94259 -13.84817 -13.61217 -13.41694 -13.37571 -13.00408 -12.90476 -12.52430 -12.22585 -12.05951 -11.70249 -11.15813 -10.68636 -10.33718 -10.26825 -9.18381 -8.03951 -6.16142 0.00405 0.21790 0.26992 1.90311 2.03355 2.16019 2.18253 2.30112 2.31031 2.36737 2.63855 2.81211 2.89211 3.15760 3.19131 3.34111 3.39839 3.54577 3.57106 3.61843 3.65331 3.68928 3.74237 3.89669 3.97577 3.98470 4.03301 4.08937 4.16598 4.53918 4.62367 4.64941 4.72365 4.87826 5.07276 5.09152 5.26495 5.48560 5.89303 6.06524 6.26069 6.73753 7.04410 7.63956 9.01644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.106 4.106 3 C 0.090 3.910 4 N -0.476 5.476 5 C 0.260 3.740 6 F -0.111 7.111 7 C 0.078 3.922 8 O -0.316 6.316 9 C 0.196 3.804 10 H 0.056 0.944 11 C -0.548 4.548 12 H 0.083 0.917 13 C 0.078 3.922 14 N -0.894 5.894 15 Si 0.913 3.087 16 H -0.269 1.269 17 H -0.276 1.276 18 H -0.266 1.266 19 C -0.007 4.007 20 N -0.270 5.270 21 C -0.047 4.047 22 C -0.041 4.041 23 C -0.040 4.040 24 C -0.129 4.129 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.167 0.833 29 H 0.284 0.716 30 H 0.114 0.886 31 H 0.169 0.831 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.128 0.872 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.127 0.873 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.236 -1.431 -13.357 13.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.108 4.108 3 C -0.067 4.067 4 N -0.189 5.189 5 C 0.105 3.895 6 F -0.090 7.090 7 C 0.028 3.972 8 O -0.230 6.230 9 C 0.141 3.859 10 H 0.074 0.926 11 C -0.585 4.585 12 H 0.101 0.899 13 C -0.128 4.128 14 N -0.531 5.531 15 Si 0.738 3.262 16 H -0.194 1.194 17 H -0.201 1.201 18 H -0.190 1.190 19 C -0.126 4.126 20 N 0.071 4.929 21 C -0.188 4.188 22 C -0.182 4.182 23 C -0.182 4.182 24 C -0.155 4.155 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.184 0.816 29 H 0.094 0.906 30 H 0.132 0.868 31 H 0.186 0.814 32 H 0.134 0.866 33 H 0.122 0.878 34 H 0.146 0.854 35 H 0.136 0.864 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.145 0.855 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.865 -0.886 -13.386 13.961 hybrid contribution -0.525 -1.195 1.033 1.665 sum 3.341 -2.081 -12.353 12.965 Atomic orbital electron populations 1.20774 0.89336 1.03983 1.02967 1.20892 0.98212 0.92915 0.98784 1.22323 0.87286 0.98297 0.98840 1.67048 1.09823 1.28536 1.13541 1.17472 0.78969 0.87428 1.05628 1.91613 1.26810 1.96799 1.93828 1.19535 0.91214 0.86374 1.00034 1.86044 1.36564 1.13066 1.87306 1.20618 0.89515 0.76365 0.99434 0.92639 1.21375 1.36979 1.09207 0.90914 0.89925 1.24960 0.93201 0.94920 0.99722 1.69477 1.37202 1.14357 1.32034 0.86140 0.79989 0.78503 0.81543 1.19415 1.20114 1.18986 1.25060 1.05928 1.07850 0.73735 1.46309 1.14543 1.14480 1.17553 1.24351 0.99775 0.88150 1.06524 1.24021 1.01347 0.90746 1.02134 1.24039 0.85229 1.08969 0.99927 1.21793 0.91920 1.00495 1.01327 0.90468 0.90588 0.90635 0.81593 0.90615 0.86753 0.81428 0.86589 0.87802 0.85369 0.86398 0.87160 0.86755 0.87032 0.87328 0.85494 0.82010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.19 10.03 36.00 0.36 0.55 16 2 C -0.11 -0.05 5.89 -104.51 -0.62 -0.67 16 3 C 0.09 0.12 10.85 -17.54 -0.19 -0.07 16 4 N -0.48 -1.90 10.37 -13.48 -0.14 -2.04 16 5 C 0.26 0.94 8.43 -17.20 -0.14 0.80 16 6 F -0.11 -0.46 17.14 2.25 0.04 -0.42 16 7 C 0.08 0.15 6.16 -39.02 -0.24 -0.09 16 8 O -0.32 -0.23 6.55 -19.64 -0.13 -0.36 16 9 C 0.20 0.11 1.18 -27.88 -0.03 0.07 16 10 H 0.06 0.00 4.04 -51.93 -0.21 -0.21 16 11 C -0.55 -3.37 8.29 -34.44 -0.29 -3.66 16 12 H 0.08 0.73 7.81 -52.49 -0.41 0.32 16 13 C 0.08 0.56 5.29 -17.82 -0.09 0.47 16 14 N -0.89 -5.63 11.29 55.43 0.63 -5.01 16 15 Si 0.91 7.21 29.54 -169.99 -5.02 2.19 16 16 H -0.27 -2.40 7.11 56.52 0.40 -2.00 16 17 H -0.28 -2.37 7.11 56.52 0.40 -1.97 16 18 H -0.27 -2.37 7.11 56.52 0.40 -1.97 16 19 C -0.01 0.03 3.68 -3.82 -0.01 0.01 16 20 N -0.27 2.51 0.05 -395.63 -0.02 2.49 16 21 C -0.05 0.42 7.26 60.06 0.44 0.86 16 22 C -0.04 0.49 7.98 60.07 0.48 0.97 16 23 C -0.04 0.38 7.36 60.06 0.44 0.82 16 24 C -0.13 -0.17 8.58 -39.16 -0.34 -0.50 16 25 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 26 H 0.08 -0.09 8.09 -51.93 -0.42 -0.51 16 27 H 0.07 -0.19 8.09 -51.93 -0.42 -0.61 16 28 H 0.17 -0.21 8.06 -52.49 -0.42 -0.63 16 29 H 0.28 2.00 8.31 -40.82 -0.34 1.66 16 30 H 0.11 -0.43 7.98 -51.93 -0.41 -0.84 16 31 H 0.17 -0.31 5.87 -51.93 -0.30 -0.62 16 32 H 0.12 -1.03 7.97 -51.93 -0.41 -1.44 16 33 H 0.10 -1.22 8.05 -51.93 -0.42 -1.63 16 34 H 0.13 -0.80 4.92 -51.93 -0.26 -1.06 16 35 H 0.12 -1.38 8.11 -51.93 -0.42 -1.80 16 36 H 0.11 -1.54 8.03 -51.93 -0.42 -1.95 16 37 H 0.11 -1.40 8.14 -51.93 -0.42 -1.83 16 38 H 0.11 -0.90 6.30 -51.93 -0.33 -1.23 16 39 H 0.11 -1.34 8.01 -51.93 -0.42 -1.76 16 40 H 0.13 -1.07 8.05 -51.93 -0.42 -1.49 16 41 H 0.16 0.21 5.89 -52.49 -0.31 -0.10 16 LS Contribution 327.10 15.07 4.93 4.93 Total: 0.00 -15.04 327.10 -5.93 -20.97 By element: Atomic # 1 Polarization: -16.34 SS G_CDS: -5.98 Total: -22.32 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -0.24 Total: -0.43 kcal Atomic # 7 Polarization: -5.02 SS G_CDS: 0.47 Total: -4.55 kcal Atomic # 8 Polarization: -0.23 SS G_CDS: -0.13 Total: -0.36 kcal Atomic # 9 Polarization: -0.46 SS G_CDS: 0.04 Total: -0.42 kcal Atomic # 14 Polarization: 7.21 SS G_CDS: -5.02 Total: 2.19 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -15.04 -5.93 -20.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228586445.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.138 kcal (2) G-P(sol) polarization free energy of solvation -15.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds