Wall clock time and date at job start Tue Mar 31 2020 05:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38135 * 119.54534 * 2 1 4 4 C 1.38662 * 119.27605 * 179.71402 * 3 2 1 5 5 C 1.38967 * 118.40100 * 0.54831 * 4 3 2 6 6 O 1.35962 * 120.48066 * 179.75901 * 5 4 3 7 7 C 1.42897 * 116.99924 * 356.53142 * 6 5 4 8 8 H 1.08997 * 109.47387 * 37.01357 * 7 6 5 9 9 C 1.50703 * 109.46901 * 277.00973 * 7 6 5 10 10 H 1.08000 * 119.99679 * 124.75317 * 9 7 6 11 11 C 1.37872 * 120.00769 * 304.75217 * 9 7 6 12 12 N 1.31511 * 120.00444 * 192.10530 * 11 9 7 13 13 Si 1.86809 * 119.99485 * 12.10490 * 11 9 7 14 14 H 1.48507 * 109.46776 * 84.58066 * 13 11 9 15 15 H 1.48494 * 109.46798 * 204.57908 * 13 11 9 16 16 H 1.48502 * 109.47085 * 324.58165 * 13 11 9 17 17 C 1.53002 * 109.46996 * 157.01616 * 7 6 5 18 18 N 1.46898 * 109.46959 * 194.49731 * 17 7 6 19 19 C 1.46905 * 109.47104 * 65.43661 * 18 17 7 20 20 C 1.46900 * 109.47048 * 185.43299 * 18 17 7 21 21 C 1.46902 * 109.47147 * 305.43489 * 18 17 7 22 22 C 1.39021 * 119.03752 * 359.73444 * 5 4 3 23 23 F 1.35093 * 119.68423 * 179.97438 * 22 5 4 24 24 N 1.31933 * 119.54526 * 180.27549 * 2 1 3 25 25 H 1.09003 * 109.46991 * 269.72796 * 1 2 3 26 26 H 1.08999 * 109.47488 * 149.72726 * 1 2 3 27 27 H 1.09003 * 109.47346 * 29.72728 * 1 2 3 28 28 H 1.08008 * 120.36299 * 359.97438 * 3 2 1 29 29 H 1.07993 * 120.79927 * 180.26173 * 4 3 2 30 30 H 0.96999 * 119.99643 * 179.97438 * 12 11 9 31 31 H 1.09002 * 109.46853 * 314.49154 * 17 7 6 32 32 H 1.09003 * 109.47232 * 74.49299 * 17 7 6 33 33 H 1.08994 * 109.47105 * 63.21199 * 19 18 17 34 34 H 1.09006 * 109.46795 * 183.21381 * 19 18 17 35 35 H 1.08995 * 109.46976 * 303.21202 * 19 18 17 36 36 H 1.08999 * 109.46895 * 60.00048 * 20 18 17 37 37 H 1.09000 * 109.47240 * 179.97438 * 20 18 17 38 38 H 1.09001 * 109.47550 * 299.99978 * 20 18 17 39 39 H 1.08995 * 109.46600 * 69.53661 * 21 18 17 40 40 H 1.08999 * 109.46722 * 189.53507 * 21 18 17 41 41 H 1.09002 * 109.46701 * 309.53453 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1882 1.2017 0.0000 4 6 3.5747 1.1952 0.0060 5 6 4.2300 -0.0303 0.0002 6 8 5.5885 -0.0859 0.0008 7 6 6.2888 1.1577 -0.0693 8 1 5.7527 1.9097 0.5095 9 6 6.3812 1.6017 -1.5065 10 1 6.0152 2.5759 -1.7953 11 6 6.9330 0.7644 -2.4527 12 7 7.2332 1.2280 -3.6462 13 14 7.2542 -1.0289 -2.0393 14 1 6.0148 -1.8170 -2.2584 15 1 8.3347 -1.5524 -2.9132 16 1 7.6685 -1.1426 -0.6178 17 6 7.6973 0.9828 0.5019 18 7 8.2912 2.3027 0.7531 19 6 7.5349 2.9867 1.8106 20 6 9.6878 2.1384 1.1781 21 6 8.2448 3.1028 -0.4780 22 6 3.4763 -1.1984 -0.0058 23 9 4.0999 -2.3968 -0.0120 24 7 2.1576 -1.1478 -0.0055 25 1 -0.3633 -0.0049 1.0277 26 1 -0.3634 -0.8875 -0.5180 27 1 -0.3634 0.8924 -0.5096 28 1 1.6466 2.1362 -0.0004 29 1 4.1320 2.1202 0.0104 30 1 7.6218 0.6389 -4.3117 31 1 7.6435 0.4248 1.4367 32 1 8.3138 0.4368 -0.2122 33 1 7.6168 2.4219 2.7392 34 1 7.9400 3.9880 1.9573 35 1 6.4869 3.0578 1.5198 36 1 10.2489 1.6308 0.3935 37 1 10.1286 3.1178 1.3640 38 1 9.7222 1.5447 2.0916 39 1 7.2112 3.3680 -0.7001 40 1 8.8320 4.0112 -0.3432 41 1 8.6568 2.5230 -1.3039 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230713872.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:56 Heat of formation + Delta-G solvation = 75.850395 kcal Electronic energy + Delta-G solvation = -23964.099655 eV Core-core repulsion = 20492.605521 eV Total energy + Delta-G solvation = -3471.494134 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.156 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.53683 -43.59302 -41.28428 -39.28194 -34.90552 -33.17399 -33.00233 -32.13731 -30.62188 -30.28801 -28.35493 -27.66460 -24.98340 -24.61090 -23.54652 -22.36654 -20.39827 -18.75334 -18.66957 -18.52613 -18.32152 -17.97019 -17.37043 -17.02810 -16.50400 -15.62716 -15.44890 -15.24631 -15.05643 -14.79635 -14.64291 -14.61381 -14.34039 -14.31531 -14.24374 -14.16015 -13.84961 -13.66106 -13.49012 -13.27868 -12.91740 -12.75663 -12.52108 -12.16085 -12.02516 -11.34673 -10.94686 -10.61803 -10.49970 -10.29596 -8.93907 -7.97728 -6.20963 0.07089 0.16505 0.33626 1.71323 1.78688 2.07815 2.13276 2.20173 2.25307 2.49581 2.74929 2.76953 2.90080 3.00487 3.04788 3.19708 3.32206 3.43438 3.48763 3.59017 3.60085 3.61927 3.78510 3.80195 3.84955 3.94496 4.03143 4.10225 4.33433 4.38937 4.68074 4.69658 4.78169 4.91735 5.09118 5.15034 5.16067 5.34119 5.60105 6.28629 6.50659 6.89987 6.92599 7.56250 9.07480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.116 3.884 3 C -0.142 4.142 4 C -0.123 4.123 5 C 0.083 3.917 6 O -0.310 6.310 7 C 0.158 3.842 8 H 0.063 0.937 9 C -0.597 4.597 10 H 0.099 0.901 11 C 0.097 3.903 12 N -0.836 5.836 13 Si 0.883 3.117 14 H -0.263 1.263 15 H -0.290 1.290 16 H -0.257 1.257 17 C -0.005 4.005 18 N -0.257 5.257 19 C -0.049 4.049 20 C -0.040 4.040 21 C -0.034 4.034 22 C 0.275 3.725 23 F -0.109 7.109 24 N -0.480 5.480 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.144 0.856 29 H 0.151 0.849 30 H 0.285 0.715 31 H 0.111 0.889 32 H 0.132 0.868 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.143 0.857 40 H 0.092 0.908 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.839 10.347 13.485 18.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.022 4.022 3 C -0.162 4.162 4 C -0.149 4.149 5 C 0.034 3.966 6 O -0.223 6.223 7 C 0.103 3.897 8 H 0.081 0.919 9 C -0.631 4.631 10 H 0.116 0.884 11 C -0.117 4.117 12 N -0.466 5.466 13 Si 0.712 3.288 14 H -0.188 1.188 15 H -0.217 1.217 16 H -0.184 1.184 17 C -0.126 4.126 18 N 0.084 4.916 19 C -0.190 4.190 20 C -0.181 4.181 21 C -0.174 4.174 22 C 0.120 3.880 23 F -0.089 7.089 24 N -0.196 5.196 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.162 0.838 29 H 0.169 0.831 30 H 0.095 0.905 31 H 0.129 0.871 32 H 0.149 0.851 33 H 0.131 0.869 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.161 0.839 40 H 0.110 0.890 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.626 9.347 13.252 17.518 hybrid contribution 0.692 -0.478 -0.150 0.855 sum 7.319 8.869 13.102 17.432 Atomic orbital electron populations 1.20690 0.87902 1.03879 1.03260 1.20873 0.96960 0.86630 0.97703 1.21854 0.93934 0.99434 1.01021 1.21552 0.94847 0.97077 1.01437 1.19468 0.84420 0.93230 0.99525 1.86094 1.13799 1.35372 1.87023 1.20743 0.86258 0.83376 0.99307 0.91931 1.21132 1.46545 1.05649 0.89811 0.88360 1.25011 0.92883 0.99073 0.94744 1.69840 1.34850 1.37273 1.04678 0.86904 0.79812 0.84168 0.77954 1.18836 1.21739 1.18394 1.24323 1.01155 0.81179 1.05958 1.45750 1.14095 1.15778 1.15940 1.24129 1.01392 1.01521 0.91976 1.24054 0.80102 1.08041 1.05912 1.24636 1.10865 0.96724 0.85147 1.17461 0.86708 0.79700 1.04167 1.91622 1.80470 1.43145 1.93624 1.66841 1.06598 1.31620 1.14548 0.90279 0.90304 0.90269 0.83848 0.83108 0.90457 0.87092 0.85054 0.86863 0.86429 0.86230 0.86331 0.86415 0.86875 0.83890 0.88984 0.85135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.05 10.17 36.01 0.37 0.32 16 2 C 0.12 0.40 6.78 -82.59 -0.56 -0.16 16 3 C -0.14 -0.20 9.73 -39.46 -0.38 -0.58 16 4 C -0.12 -0.22 8.92 -39.15 -0.35 -0.57 16 5 C 0.08 0.39 6.58 -39.02 -0.26 0.13 16 6 O -0.31 -1.14 6.20 -19.62 -0.12 -1.26 16 7 C 0.16 -0.16 1.48 -27.88 -0.04 -0.20 16 8 H 0.06 -0.27 3.74 -51.93 -0.19 -0.47 16 9 C -0.60 -2.06 5.58 -34.44 -0.19 -2.25 16 10 H 0.10 0.48 7.14 -52.49 -0.38 0.10 16 11 C 0.10 0.72 4.94 -17.82 -0.09 0.64 16 12 N -0.84 -8.81 13.96 55.43 0.77 -8.04 16 13 Si 0.88 6.77 24.31 -169.99 -4.13 2.64 16 14 H -0.26 -3.00 7.11 56.52 0.40 -2.59 16 15 H -0.29 -2.65 7.11 56.52 0.40 -2.25 16 16 H -0.26 -1.08 5.12 56.52 0.29 -0.79 16 17 C 0.00 0.03 3.07 -3.82 -0.01 0.02 16 18 N -0.26 2.78 0.05 -395.62 -0.02 2.76 16 19 C -0.05 0.64 7.83 60.07 0.47 1.11 16 20 C -0.04 0.53 7.99 60.06 0.48 1.01 16 21 C -0.03 0.28 6.68 60.07 0.40 0.69 16 22 C 0.27 1.99 8.43 -17.20 -0.14 1.85 16 23 F -0.11 -0.96 17.14 2.25 0.04 -0.92 16 24 N -0.48 -3.26 10.28 -9.70 -0.10 -3.35 16 25 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 26 H 0.08 0.11 8.14 -51.93 -0.42 -0.32 16 27 H 0.08 -0.12 8.07 -51.93 -0.42 -0.54 16 28 H 0.14 -0.26 8.06 -52.48 -0.42 -0.68 16 29 H 0.15 -0.18 5.90 -52.49 -0.31 -0.49 16 30 H 0.28 3.07 8.31 -40.82 -0.34 2.73 16 31 H 0.11 -0.84 8.10 -51.93 -0.42 -1.26 16 32 H 0.13 -0.47 4.75 -51.93 -0.25 -0.71 16 33 H 0.11 -1.62 8.12 -51.93 -0.42 -2.04 16 34 H 0.12 -1.77 8.13 -51.93 -0.42 -2.19 16 35 H 0.12 -1.44 5.91 -51.93 -0.31 -1.75 16 36 H 0.12 -1.49 8.11 -51.93 -0.42 -1.91 16 37 H 0.12 -1.79 8.07 -51.93 -0.42 -2.21 16 38 H 0.11 -1.64 8.13 -51.93 -0.42 -2.06 16 39 H 0.14 -0.91 5.20 -51.93 -0.27 -1.18 16 40 H 0.09 -1.04 8.00 -51.93 -0.42 -1.45 16 41 H 0.13 -0.64 7.13 -51.93 -0.37 -1.01 16 LS Contribution 316.59 15.07 4.77 4.77 Total: 0.00 -19.90 316.59 -5.05 -24.95 By element: Atomic # 1 Polarization: -17.59 SS G_CDS: -5.95 Total: -23.54 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -0.31 Total: 1.99 kcal Atomic # 7 Polarization: -9.29 SS G_CDS: 0.65 Total: -8.63 kcal Atomic # 8 Polarization: -1.14 SS G_CDS: -0.12 Total: -1.26 kcal Atomic # 9 Polarization: -0.96 SS G_CDS: 0.04 Total: -0.92 kcal Atomic # 14 Polarization: 6.77 SS G_CDS: -4.13 Total: 2.64 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -19.90 -5.05 -24.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230713872.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.796 kcal (2) G-P(sol) polarization free energy of solvation -19.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds