Wall clock time and date at job start Tue Mar 31 2020 05:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86805 * 119.99993 * 2 1 4 4 H 1.48498 * 109.47002 * 239.99957 * 3 2 1 5 5 H 1.48504 * 109.47022 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47289 * 119.99617 * 3 2 1 7 7 C 1.38946 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99949 * 199.40203 * 7 2 1 9 9 N 1.37099 * 120.00106 * 19.40291 * 7 2 1 10 10 C 1.34784 * 119.99776 * 42.44298 * 9 7 2 11 11 O 1.21287 * 119.99932 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99607 * 180.02562 * 10 9 7 13 13 O 1.42899 * 109.46791 * 180.02562 * 12 10 9 14 14 C 1.42906 * 113.99998 * 179.97438 * 13 12 10 15 15 H 1.08998 * 110.43252 * 328.90621 * 14 13 12 16 16 C 1.54810 * 110.48628 * 206.22348 * 14 13 12 17 17 C 1.55003 * 102.08931 * 220.44407 * 16 14 13 18 18 O 1.44379 * 103.49122 * 37.02165 * 17 16 14 19 19 C 1.43746 * 106.97361 * 319.94256 * 18 17 16 20 20 C 1.46499 * 120.00219 * 222.44909 * 9 7 2 21 21 C 1.54270 * 110.03066 * 54.32091 * 20 9 7 22 22 C 1.54887 * 104.19175 * 217.10590 * 21 20 9 23 23 C 1.54890 * 102.75055 * 37.94575 * 22 21 20 24 24 C 1.53872 * 110.02926 * 297.15711 * 20 9 7 25 25 H 0.97005 * 119.99756 * 354.87528 * 1 2 3 26 26 H 1.08996 * 109.47304 * 59.99902 * 12 10 9 27 27 H 1.09007 * 109.47221 * 299.99637 * 12 10 9 28 28 H 1.09000 * 110.90823 * 338.63248 * 16 14 13 29 29 H 1.08999 * 110.90908 * 102.24484 * 16 14 13 30 30 H 1.09004 * 110.61596 * 278.52102 * 17 16 14 31 31 H 1.08994 * 110.61798 * 155.52583 * 17 16 14 32 32 H 1.09005 * 109.87822 * 267.08520 * 19 18 17 33 33 H 1.09001 * 110.00346 * 146.01175 * 19 18 17 34 34 H 1.09001 * 110.01512 * 175.76259 * 20 9 7 35 35 H 1.08999 * 110.48521 * 335.78424 * 21 20 9 36 36 H 1.09003 * 110.48615 * 98.43414 * 21 20 9 37 37 H 1.08998 * 110.75999 * 279.62808 * 22 21 20 38 38 H 1.09006 * 110.75615 * 156.26226 * 22 21 20 39 39 H 1.09004 * 110.48315 * 203.37336 * 23 22 21 40 40 H 1.08994 * 110.48563 * 80.73700 * 23 22 21 41 41 H 1.09000 * 110.02710 * 238.56661 * 24 20 9 42 42 H 1.08994 * 110.03473 * 359.97438 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0429 -1.2297 0.3113 9 7 1.3818 -2.3571 -0.3934 10 6 0.5754 -2.3509 -1.4734 11 8 0.4049 -1.3246 -2.0969 12 6 -0.1143 -3.6190 -1.9060 13 8 -0.9066 -3.3582 -3.0663 14 6 -1.6062 -4.5017 -3.5614 15 1 -1.0407 -5.4112 -3.3585 16 6 -1.8774 -4.3561 -5.0785 17 6 -3.3189 -4.9114 -5.2055 18 8 -3.9649 -4.4505 -3.9994 19 6 -3.0106 -4.5884 -2.9332 20 6 1.5881 -3.5967 0.3596 21 6 1.2592 -3.3708 1.8498 22 6 2.3116 -4.2209 2.6041 23 6 3.5869 -4.0254 1.7470 24 6 3.0681 -4.0129 0.2943 25 1 -0.4850 0.8367 0.0750 26 1 -0.7556 -3.9768 -1.1005 27 1 0.6330 -4.3775 -2.1397 28 1 -1.8354 -3.3101 -5.3825 29 1 -1.1766 -4.9567 -5.6584 30 1 -3.3086 -6.0008 -5.2431 31 1 -3.8123 -4.5006 -6.0862 32 1 -3.1388 -5.5539 -2.4437 33 1 -3.1427 -3.7851 -2.2083 34 1 0.9592 -4.3890 -0.0465 35 1 1.3638 -2.3170 2.1080 36 1 0.2523 -3.7219 2.0757 37 1 2.0174 -5.2702 2.6252 38 1 2.4630 -3.8407 3.6144 39 1 4.2786 -4.8542 1.8981 40 1 4.0673 -3.0774 1.9888 41 1 3.1573 -5.0075 -0.1426 42 1 3.6327 -3.2928 -0.2979 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319367707.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:39 Heat of formation + Delta-G solvation = -114.806901 kcal Electronic energy + Delta-G solvation = -23524.493114 eV Core-core repulsion = 20084.128841 eV Total energy + Delta-G solvation = -3440.364273 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.56711 -38.80149 -37.07732 -36.07030 -33.21371 -31.66519 -31.20080 -28.78191 -28.08110 -27.37193 -26.81405 -24.06373 -22.66420 -21.17033 -20.14911 -19.93507 -19.22281 -17.01971 -16.79854 -16.04880 -15.94506 -15.61463 -14.96808 -14.82877 -14.66376 -14.40651 -14.05150 -13.50234 -13.02121 -12.93924 -12.72445 -12.52585 -12.06923 -11.81716 -11.59268 -11.38719 -11.29553 -10.97648 -10.81358 -10.72209 -10.65262 -10.61630 -10.48958 -10.47323 -10.20161 -10.08169 -9.80469 -9.78405 -9.16438 -8.68440 -7.94090 -7.03359 -6.05329 -3.78259 3.33629 3.42245 3.45399 3.72220 3.96778 4.23234 4.41887 4.58538 4.89682 4.97749 5.03078 5.11843 5.17251 5.21080 5.31176 5.42947 5.51053 5.53056 5.63360 5.66779 5.73591 5.86385 5.92836 5.96088 6.00983 6.05916 6.08032 6.13219 6.21916 6.27302 6.41581 6.43861 6.59373 6.77913 6.82873 6.93118 7.19423 7.51333 7.69906 8.33959 9.10386 9.25417 9.71670 10.35693 11.03900 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015446 B = 0.005508 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.386646 B = 5082.461288 C = 6304.682139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.072 3.928 3 Si 0.910 3.090 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.279 1.279 7 C -0.343 4.343 8 H 0.078 0.922 9 N -0.447 5.447 10 C 0.474 3.526 11 O -0.513 6.513 12 C 0.047 3.953 13 O -0.342 6.342 14 C 0.052 3.948 15 H 0.072 0.928 16 C -0.152 4.152 17 C 0.047 3.953 18 O -0.375 6.375 19 C 0.023 3.977 20 C 0.129 3.871 21 C -0.125 4.125 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.132 4.132 25 H 0.264 0.736 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.282 -13.239 -1.869 13.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.139 4.139 3 Si 0.737 3.263 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.205 1.205 7 C -0.469 4.469 8 H 0.096 0.904 9 N -0.171 5.171 10 C 0.260 3.740 11 O -0.389 6.389 12 C -0.033 4.033 13 O -0.259 6.259 14 C -0.007 4.007 15 H 0.090 0.910 16 C -0.190 4.190 17 C -0.029 4.029 18 O -0.293 6.293 19 C -0.054 4.054 20 C 0.024 3.976 21 C -0.163 4.163 22 C -0.161 4.161 23 C -0.155 4.155 24 C -0.171 4.171 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.078 0.922 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.791 -12.297 -2.351 12.545 hybrid contribution 0.551 0.278 0.285 0.680 sum -0.240 -12.019 -2.066 12.197 Atomic orbital electron populations 1.69821 1.06539 1.27485 1.42380 1.25212 0.94742 0.99304 0.94610 0.86322 0.79329 0.82274 0.78351 1.20053 1.21306 1.20495 1.18730 0.95045 0.83990 1.49184 0.90392 1.43294 1.44193 1.07353 1.22270 1.19463 0.83946 0.88338 0.82256 1.90551 1.61521 1.32823 1.53988 1.22504 0.93911 0.98913 0.87953 1.88169 1.62297 1.31223 1.44258 1.23502 0.92792 0.90245 0.94141 0.91007 1.23201 0.96978 1.04114 0.94673 1.23522 0.92004 0.98318 0.89090 1.88886 1.37086 1.86020 1.17354 1.23795 0.88425 1.01976 0.91185 1.21710 0.94701 0.88400 0.92835 1.22638 0.96947 1.02333 0.94367 1.22449 0.96084 0.99134 0.98428 1.22259 0.96997 1.00915 0.95311 1.22496 0.97401 1.00285 0.96910 0.92586 0.92361 0.92437 0.88825 0.89735 0.92263 0.88753 0.92168 0.88529 0.92013 0.88774 0.92981 0.92540 0.92270 0.92882 0.91560 0.92953 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.72 11.65 55.50 0.65 -24.07 16 2 C 0.07 2.03 4.34 -17.47 -0.08 1.95 16 3 Si 0.91 22.10 29.60 -169.99 -5.03 17.07 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.34 -9.14 7.29 -14.93 -0.11 -9.25 16 8 H 0.08 2.01 7.41 -52.49 -0.39 1.62 16 9 N -0.45 -10.89 2.44 -106.54 -0.26 -11.15 16 10 C 0.47 12.27 7.05 -10.98 -0.08 12.19 16 11 O -0.51 -15.83 14.13 -14.36 -0.20 -16.04 16 12 C 0.05 0.95 4.60 36.00 0.17 1.11 16 13 O -0.34 -7.00 9.49 -55.14 -0.52 -7.53 16 14 C 0.05 0.78 3.51 -25.21 -0.09 0.69 16 15 H 0.07 0.88 7.86 -51.93 -0.41 0.48 16 16 C -0.15 -1.95 6.90 -24.72 -0.17 -2.12 16 17 C 0.05 0.54 7.72 38.22 0.29 0.84 16 18 O -0.37 -5.73 11.52 -35.23 -0.41 -6.14 16 19 C 0.02 0.34 7.52 37.73 0.28 0.63 16 20 C 0.13 2.45 3.20 -66.81 -0.21 2.24 16 21 C -0.12 -2.27 6.40 -25.07 -0.16 -2.43 16 22 C -0.12 -1.78 6.91 -24.74 -0.17 -1.95 16 23 C -0.12 -1.72 6.83 -25.07 -0.17 -1.89 16 24 C -0.13 -2.19 6.23 -25.62 -0.16 -2.35 16 25 H 0.26 7.63 8.32 -40.82 -0.34 7.30 16 26 H 0.06 1.07 7.71 -51.93 -0.40 0.67 16 27 H 0.06 0.98 7.84 -51.92 -0.41 0.57 16 28 H 0.09 1.38 8.09 -51.93 -0.42 0.96 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 1.61 7.97 -51.93 -0.41 1.20 16 34 H 0.06 1.05 5.84 -51.93 -0.30 0.75 16 35 H 0.09 2.04 6.89 -51.93 -0.36 1.68 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.41 7.21 -51.93 -0.37 1.03 16 LS Contribution 335.20 15.07 5.05 5.05 Total: -1.00 -34.01 335.20 -8.21 -42.22 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.84 Total: 0.92 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -0.65 Total: -0.35 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.39 Total: -35.22 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -1.13 Total: -29.70 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.01 -8.21 -42.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319367707.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.584 kcal (2) G-P(sol) polarization free energy of solvation -34.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds