Wall clock time and date at job start Tue Mar 31 2020 05:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86805 * 119.99993 * 2 1 4 4 H 1.48498 * 109.47002 * 239.99957 * 3 2 1 5 5 H 1.48504 * 109.47022 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47289 * 119.99617 * 3 2 1 7 7 C 1.38946 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99949 * 199.40203 * 7 2 1 9 9 N 1.37099 * 120.00106 * 19.40291 * 7 2 1 10 10 C 1.34784 * 119.99776 * 42.44298 * 9 7 2 11 11 O 1.21287 * 119.99932 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99607 * 180.02562 * 10 9 7 13 13 O 1.42899 * 109.46791 * 180.02562 * 12 10 9 14 14 C 1.42906 * 113.99998 * 179.97438 * 13 12 10 15 15 H 1.08998 * 110.43252 * 328.90621 * 14 13 12 16 16 C 1.54810 * 110.48628 * 206.22348 * 14 13 12 17 17 C 1.55003 * 102.08931 * 220.44407 * 16 14 13 18 18 O 1.44379 * 103.49122 * 37.02165 * 17 16 14 19 19 C 1.43746 * 106.97361 * 319.94256 * 18 17 16 20 20 C 1.46499 * 120.00219 * 222.44909 * 9 7 2 21 21 C 1.54270 * 110.03066 * 54.32091 * 20 9 7 22 22 C 1.54887 * 104.19175 * 217.10590 * 21 20 9 23 23 C 1.54890 * 102.75055 * 37.94575 * 22 21 20 24 24 C 1.53872 * 110.02926 * 297.15711 * 20 9 7 25 25 H 0.97005 * 119.99756 * 354.87528 * 1 2 3 26 26 H 1.08996 * 109.47304 * 59.99902 * 12 10 9 27 27 H 1.09007 * 109.47221 * 299.99637 * 12 10 9 28 28 H 1.09000 * 110.90823 * 338.63248 * 16 14 13 29 29 H 1.08999 * 110.90908 * 102.24484 * 16 14 13 30 30 H 1.09004 * 110.61596 * 278.52102 * 17 16 14 31 31 H 1.08994 * 110.61798 * 155.52583 * 17 16 14 32 32 H 1.09005 * 109.87822 * 267.08520 * 19 18 17 33 33 H 1.09001 * 110.00346 * 146.01175 * 19 18 17 34 34 H 1.09001 * 110.01512 * 175.76259 * 20 9 7 35 35 H 1.08999 * 110.48521 * 335.78424 * 21 20 9 36 36 H 1.09003 * 110.48615 * 98.43414 * 21 20 9 37 37 H 1.08998 * 110.75999 * 279.62808 * 22 21 20 38 38 H 1.09006 * 110.75615 * 156.26226 * 22 21 20 39 39 H 1.09004 * 110.48315 * 203.37336 * 23 22 21 40 40 H 1.08994 * 110.48563 * 80.73700 * 23 22 21 41 41 H 1.09000 * 110.02710 * 238.56661 * 24 20 9 42 42 H 1.08994 * 110.03473 * 359.97438 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0429 -1.2297 0.3113 9 7 1.3818 -2.3571 -0.3934 10 6 0.5754 -2.3509 -1.4734 11 8 0.4049 -1.3246 -2.0969 12 6 -0.1143 -3.6190 -1.9060 13 8 -0.9066 -3.3582 -3.0663 14 6 -1.6062 -4.5017 -3.5614 15 1 -1.0407 -5.4112 -3.3585 16 6 -1.8774 -4.3561 -5.0785 17 6 -3.3189 -4.9114 -5.2055 18 8 -3.9649 -4.4505 -3.9994 19 6 -3.0106 -4.5884 -2.9332 20 6 1.5881 -3.5967 0.3596 21 6 1.2592 -3.3708 1.8498 22 6 2.3116 -4.2209 2.6041 23 6 3.5869 -4.0254 1.7470 24 6 3.0681 -4.0129 0.2943 25 1 -0.4850 0.8367 0.0750 26 1 -0.7556 -3.9768 -1.1005 27 1 0.6330 -4.3775 -2.1397 28 1 -1.8354 -3.3101 -5.3825 29 1 -1.1766 -4.9567 -5.6584 30 1 -3.3086 -6.0008 -5.2431 31 1 -3.8123 -4.5006 -6.0862 32 1 -3.1388 -5.5539 -2.4437 33 1 -3.1427 -3.7851 -2.2083 34 1 0.9592 -4.3890 -0.0465 35 1 1.3638 -2.3170 2.1080 36 1 0.2523 -3.7219 2.0757 37 1 2.0174 -5.2702 2.6252 38 1 2.4630 -3.8407 3.6144 39 1 4.2786 -4.8542 1.8981 40 1 4.0673 -3.0774 1.9888 41 1 3.1573 -5.0075 -0.1426 42 1 3.6327 -3.2928 -0.2979 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319367707.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:39 Heat of formation + Delta-G solvation = -137.618953 kcal Electronic energy + Delta-G solvation = -23525.482318 eV Core-core repulsion = 20084.128841 eV Total energy + Delta-G solvation = -3441.353477 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.88984 -40.32997 -38.53568 -37.63826 -35.12555 -33.56870 -32.38444 -29.94831 -29.40631 -29.01854 -28.29536 -25.95605 -23.69778 -22.29700 -21.69695 -21.34363 -20.91808 -18.49043 -18.18876 -17.69815 -17.41910 -16.88842 -16.49649 -16.32274 -16.08280 -15.82341 -15.63039 -15.16435 -14.52302 -14.48699 -14.05105 -13.80820 -13.45021 -13.20189 -13.14357 -12.91424 -12.80727 -12.52992 -12.46424 -12.36444 -12.26131 -12.08848 -11.82532 -11.75215 -11.69860 -11.34302 -11.30136 -10.92727 -10.71879 -10.43541 -9.94708 -9.03263 -8.17336 -5.90742 1.35219 1.45068 1.47487 2.18411 2.42323 2.50842 2.95854 3.26695 3.36587 3.53757 3.87058 3.89514 3.93002 3.97942 4.03428 4.18897 4.22840 4.35005 4.40567 4.43365 4.55192 4.60205 4.72235 4.72589 4.79066 4.84331 4.86935 4.90906 4.97832 5.05321 5.14939 5.21028 5.32621 5.45624 5.56355 5.60424 5.71814 5.81826 6.16957 6.31005 7.06667 7.28737 7.72979 8.39763 8.92099 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015446 B = 0.005508 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.386646 B = 5082.461288 C = 6304.682139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.019 3.981 3 Si 0.963 3.037 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.254 1.254 7 C -0.342 4.342 8 H 0.081 0.919 9 N -0.455 5.455 10 C 0.452 3.548 11 O -0.580 6.580 12 C 0.062 3.938 13 O -0.383 6.383 14 C 0.043 3.957 15 H 0.109 0.891 16 C -0.152 4.152 17 C 0.048 3.952 18 O -0.404 6.404 19 C 0.024 3.976 20 C 0.118 3.882 21 C -0.126 4.126 22 C -0.110 4.110 23 C -0.114 4.114 24 C -0.128 4.128 25 H 0.256 0.744 26 H 0.075 0.925 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.047 0.953 41 H 0.087 0.913 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.776 -16.886 -1.588 16.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.187 4.187 3 Si 0.789 3.211 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.178 1.178 7 C -0.469 4.469 8 H 0.099 0.901 9 N -0.178 5.178 10 C 0.240 3.760 11 O -0.461 6.461 12 C -0.017 4.017 13 O -0.302 6.302 14 C -0.015 4.015 15 H 0.127 0.873 16 C -0.190 4.190 17 C -0.028 4.028 18 O -0.324 6.324 19 C -0.053 4.053 20 C 0.014 3.986 21 C -0.165 4.165 22 C -0.147 4.147 23 C -0.152 4.152 24 C -0.166 4.166 25 H 0.065 0.935 26 H 0.093 0.907 27 H 0.114 0.886 28 H 0.081 0.919 29 H 0.133 0.867 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.066 0.934 41 H 0.105 0.895 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.302 -15.992 -2.028 16.123 hybrid contribution 0.232 1.324 0.157 1.353 sum 0.534 -14.668 -1.872 14.796 Atomic orbital electron populations 1.69948 1.08043 1.27336 1.45172 1.26001 0.95351 1.02524 0.94830 0.85476 0.78185 0.78697 0.78753 1.20947 1.21850 1.17836 1.18965 0.95248 0.85216 1.47482 0.90113 1.43574 1.43286 1.08482 1.22478 1.20570 0.83815 0.89723 0.81891 1.90499 1.63792 1.35655 1.56125 1.22288 0.94712 0.96042 0.88699 1.88133 1.63022 1.34677 1.44339 1.23902 0.92684 0.89881 0.95032 0.87307 1.23263 0.98893 1.03016 0.93790 1.23777 0.90674 1.00226 0.88119 1.88849 1.37979 1.86778 1.18751 1.23788 0.88371 1.02367 0.90791 1.22103 0.97185 0.86623 0.92680 1.22579 0.98776 1.00501 0.94617 1.22412 0.94171 1.00017 0.98142 1.22259 0.97624 1.01412 0.93869 1.22458 0.94865 1.01190 0.98108 0.93540 0.90728 0.88645 0.91906 0.86655 0.88940 0.87438 0.88877 0.91852 0.89357 0.93206 0.92546 0.89438 0.91403 0.89491 0.93405 0.89470 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.57 11.65 21.66 0.25 -54.32 16 2 C 0.02 1.10 4.34 84.93 0.37 1.47 16 3 Si 0.96 47.00 29.60 68.60 2.03 49.04 16 4 H -0.28 -14.06 7.11 99.48 0.71 -13.35 16 5 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 6 H -0.25 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.34 -18.75 7.29 84.04 0.61 -18.13 16 8 H 0.08 4.27 7.41 -2.91 -0.02 4.24 16 9 N -0.46 -22.46 2.44 -609.38 -1.49 -23.95 16 10 C 0.45 23.90 7.05 87.66 0.62 24.51 16 11 O -0.58 -37.54 14.13 15.98 0.23 -37.31 16 12 C 0.06 2.42 4.60 71.24 0.33 2.75 16 13 O -0.38 -15.68 9.49 -129.94 -1.23 -16.92 16 14 C 0.04 1.20 3.51 31.58 0.11 1.31 16 15 H 0.11 2.20 7.86 -2.39 -0.02 2.19 16 16 C -0.15 -3.63 6.90 31.90 0.22 -3.41 16 17 C 0.05 0.98 7.72 72.67 0.56 1.54 16 18 O -0.40 -11.92 11.52 -148.98 -1.72 -13.63 16 19 C 0.02 0.67 7.52 72.35 0.54 1.21 16 20 C 0.12 4.29 3.20 45.72 0.15 4.43 16 21 C -0.13 -4.46 6.40 31.67 0.20 -4.25 16 22 C -0.11 -2.80 6.91 31.88 0.22 -2.58 16 23 C -0.11 -2.98 6.83 31.67 0.22 -2.77 16 24 C -0.13 -3.89 6.23 31.32 0.20 -3.69 16 25 H 0.26 15.69 8.32 -92.70 -0.77 14.92 16 26 H 0.07 2.61 7.71 -2.39 -0.02 2.60 16 27 H 0.10 2.92 7.84 -2.38 -0.02 2.90 16 28 H 0.06 1.88 8.09 -2.39 -0.02 1.86 16 29 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.06 2.17 7.97 -2.39 -0.02 2.15 16 34 H 0.09 2.72 5.84 -2.39 -0.01 2.71 16 35 H 0.05 2.20 6.89 -2.39 -0.02 2.19 16 36 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.07 1.63 8.14 -2.38 -0.02 1.62 16 39 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.05 1.70 7.21 -2.39 -0.02 1.68 16 Total: -1.00 -80.77 335.20 3.41 -77.36 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.99 Total: 17.34 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 4.34 Total: 2.39 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -1.23 Total: -78.26 kcal Atomic # 8 Polarization: -65.14 SS G_CDS: -2.72 Total: -67.86 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.04 kcal Total: -80.77 3.41 -77.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319367707.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.258 kcal (2) G-P(sol) polarization free energy of solvation -80.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds