Wall clock time and date at job start Tue Mar 31 2020 05:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86798 * 119.99878 * 2 1 4 4 H 1.48504 * 109.46945 * 239.99837 * 3 2 1 5 5 H 1.48499 * 109.47323 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47078 * 120.00016 * 3 2 1 7 7 C 1.38949 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00627 * 154.28468 * 7 2 1 9 9 N 1.37099 * 119.99665 * 334.29111 * 7 2 1 10 10 C 1.34771 * 120.00182 * 307.85745 * 9 7 2 11 11 O 1.21301 * 120.00173 * 183.65299 * 10 9 7 12 12 C 1.50693 * 119.99901 * 3.65649 * 10 9 7 13 13 O 1.42905 * 109.47406 * 186.30445 * 12 10 9 14 14 C 1.42894 * 114.00409 * 180.02562 * 13 12 10 15 15 H 1.09004 * 110.45745 * 27.39361 * 14 13 12 16 16 C 1.54502 * 110.51525 * 149.99852 * 14 13 12 17 17 C 1.54480 * 104.06569 * 118.64510 * 16 14 13 18 18 O 1.44425 * 104.80303 * 23.97731 * 17 16 14 19 19 C 1.44424 * 105.27310 * 319.49131 * 18 17 16 20 20 C 1.46505 * 119.99999 * 127.86266 * 9 7 2 21 21 C 1.54268 * 110.07138 * 302.11687 * 20 9 7 22 22 C 1.54886 * 104.19937 * 95.69836 * 21 20 9 23 23 C 1.54891 * 102.74880 * 37.93736 * 22 21 20 24 24 C 1.53875 * 110.03211 * 59.30489 * 20 9 7 25 25 H 0.97006 * 120.00152 * 355.10841 * 1 2 3 26 26 H 1.08999 * 109.47130 * 306.29862 * 12 10 9 27 27 H 1.09000 * 109.47775 * 66.30452 * 12 10 9 28 28 H 1.09005 * 110.51504 * 237.29011 * 16 14 13 29 29 H 1.08998 * 110.51102 * 359.86258 * 16 14 13 30 30 H 1.08995 * 110.37414 * 142.81276 * 17 16 14 31 31 H 1.09001 * 110.37306 * 265.14868 * 17 16 14 32 32 H 1.08994 * 110.37379 * 281.67425 * 19 18 17 33 33 H 1.09003 * 110.36936 * 159.34267 * 19 18 17 34 34 H 1.09002 * 110.01945 * 180.70129 * 20 9 7 35 35 H 1.09000 * 110.48441 * 214.37449 * 21 20 9 36 36 H 1.09000 * 110.48872 * 337.01499 * 21 20 9 37 37 H 1.09002 * 110.75297 * 279.62770 * 22 21 20 38 38 H 1.08999 * 110.76234 * 156.25433 * 22 21 20 39 39 H 1.08995 * 110.49279 * 203.38163 * 23 22 21 40 40 H 1.09004 * 110.48330 * 80.73556 * 23 22 21 41 41 H 1.08998 * 110.03548 * 359.95421 * 24 20 9 42 42 H 1.09004 * 110.02885 * 121.33393 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0087 -1.2499 -0.4052 9 7 1.4252 -2.3316 0.5161 10 6 0.8948 -2.3100 1.7549 11 8 0.4379 -3.3251 2.2368 12 6 0.8694 -1.0248 2.5413 13 8 0.3984 -1.2855 3.8651 14 6 0.3351 -0.1264 4.6984 15 1 0.1862 0.7690 4.0948 16 6 -0.7957 -0.2704 5.7413 17 6 -0.0626 -0.2155 7.0999 18 8 1.1648 0.4955 6.8285 19 6 1.6177 -0.0015 5.5503 20 6 1.3780 -3.5609 -0.2795 21 6 0.6449 -3.3014 -1.6118 22 6 1.7831 -3.0135 -2.6220 23 6 2.8886 -4.0056 -2.1832 24 6 2.8046 -4.0086 -0.6429 25 1 -0.4851 0.8370 0.0716 26 1 1.8755 -0.6082 2.5892 27 1 0.2042 -0.3128 2.0527 28 1 -1.5024 0.5550 5.6550 29 1 -1.3081 -1.2248 5.6197 30 1 -0.6610 0.3263 7.8323 31 1 0.1532 -1.2230 7.4557 32 1 2.0913 -0.9761 5.6683 33 1 2.3102 0.7048 5.0923 34 1 0.8705 -4.3475 0.2788 35 1 0.0802 -4.1832 -1.9145 36 1 -0.0139 -2.4375 -1.5229 37 1 2.1295 -1.9840 -2.5305 38 1 1.4577 -3.2236 -3.6409 39 1 3.8674 -3.6558 -2.5112 40 1 2.6863 -5.0012 -2.5782 41 1 3.5320 -3.3109 -0.2280 42 1 2.9898 -5.0123 -0.2600 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319367710.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:43 Heat of formation + Delta-G solvation = -126.024678 kcal Electronic energy + Delta-G solvation = -23754.974973 eV Core-core repulsion = 20314.124261 eV Total energy + Delta-G solvation = -3440.850712 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.45407 -38.93112 -37.01020 -35.88765 -34.12222 -31.52530 -31.08360 -28.66106 -27.91596 -27.67696 -26.07296 -24.51166 -22.75604 -20.87370 -20.22626 -19.76363 -19.26054 -16.88053 -16.74740 -16.05692 -15.63584 -15.42036 -15.29315 -14.74791 -14.53498 -14.35393 -14.16693 -13.66444 -13.23151 -12.95400 -12.76124 -12.38384 -11.97192 -11.90760 -11.61602 -11.37903 -11.24941 -11.21444 -10.80752 -10.75550 -10.65499 -10.47598 -10.44148 -10.38524 -10.23787 -9.85886 -9.79391 -9.75610 -9.13373 -8.76356 -8.25644 -7.41048 -6.52035 -4.30144 3.03279 3.13199 3.14588 3.76561 3.98565 4.05975 4.24186 4.70973 4.75857 4.90887 5.06138 5.12083 5.36951 5.37586 5.43910 5.53954 5.66660 5.75392 5.87532 5.92131 5.99745 6.08552 6.15905 6.23626 6.27609 6.31498 6.34245 6.39384 6.46517 6.53678 6.60768 6.65876 6.75470 6.82082 7.06817 7.09311 7.24553 7.33495 7.77193 7.93642 8.54502 8.81380 9.52368 9.94905 10.48673 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.019306 B = 0.005611 C = 0.004812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.950418 B = 4988.907185 C = 5817.868438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.047 3.953 3 Si 0.892 3.108 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.332 4.332 8 H 0.085 0.915 9 N -0.445 5.445 10 C 0.515 3.485 11 O -0.594 6.594 12 C 0.048 3.952 13 O -0.361 6.361 14 C 0.057 3.943 15 H 0.073 0.927 16 C -0.155 4.155 17 C 0.047 3.953 18 O -0.378 6.378 19 C 0.023 3.977 20 C 0.134 3.866 21 C -0.121 4.121 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.127 4.127 25 H 0.271 0.729 26 H 0.065 0.935 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.047 0.953 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.797 0.898 3.069 3.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.159 4.159 3 Si 0.718 3.282 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.460 4.460 8 H 0.103 0.897 9 N -0.167 5.167 10 C 0.304 3.696 11 O -0.478 6.478 12 C -0.030 4.030 13 O -0.279 6.279 14 C -0.002 4.002 15 H 0.091 0.909 16 C -0.193 4.193 17 C -0.030 4.030 18 O -0.296 6.296 19 C -0.054 4.054 20 C 0.030 3.970 21 C -0.160 4.160 22 C -0.153 4.153 23 C -0.157 4.157 24 C -0.165 4.165 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.118 0.882 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.456 0.478 3.413 3.741 hybrid contribution 0.347 1.141 -0.437 1.270 sum 1.803 1.619 2.976 3.837 Atomic orbital electron populations 1.70126 1.06092 1.28529 1.43469 1.25529 0.94886 0.99960 0.95568 0.86546 0.80027 0.81994 0.79682 1.19350 1.20712 1.19470 1.19168 0.98398 0.85442 1.43018 0.89743 1.43310 1.53078 1.09618 1.10656 1.19853 0.79622 0.88363 0.81746 1.90524 1.51351 1.35466 1.70508 1.22736 1.00252 0.98322 0.81727 1.87980 1.86627 1.30071 1.23222 1.23362 0.94181 0.90195 0.92507 0.90897 1.23000 0.98060 1.04186 0.94019 1.23384 0.85634 0.97082 0.96884 1.89085 1.39833 1.63469 1.37261 1.24001 0.97208 1.00432 0.83769 1.21552 0.94405 0.88867 0.92131 1.22536 0.97804 1.01119 0.94498 1.22437 0.95615 1.00198 0.97017 1.22289 0.98715 0.98723 0.95926 1.22439 0.98438 1.00223 0.95434 0.91867 0.91739 0.88171 0.90148 0.88921 0.89204 0.92050 0.91014 0.88904 0.90436 0.93296 0.89590 0.90290 0.93417 0.92649 0.92821 0.91019 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.80 11.47 55.50 0.64 -20.16 16 2 C 0.05 1.10 3.41 -17.47 -0.06 1.04 16 3 Si 0.89 18.03 29.63 -169.99 -5.04 13.00 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.33 -7.79 6.23 -14.93 -0.09 -7.88 16 8 H 0.09 1.95 7.26 -52.49 -0.38 1.56 16 9 N -0.44 -10.70 2.31 -106.54 -0.25 -10.95 16 10 C 0.51 13.27 7.33 -10.99 -0.08 13.19 16 11 O -0.59 -16.83 15.87 -14.29 -0.23 -17.05 16 12 C 0.05 1.10 4.41 36.00 0.16 1.26 16 13 O -0.36 -7.84 9.52 -55.06 -0.52 -8.37 16 14 C 0.06 0.98 3.61 -25.17 -0.09 0.89 16 15 H 0.07 1.22 7.82 -51.93 -0.41 0.81 16 16 C -0.15 -2.23 6.90 -25.17 -0.17 -2.40 16 17 C 0.05 0.61 7.63 37.93 0.29 0.90 16 18 O -0.38 -5.86 11.65 -35.23 -0.41 -6.27 16 19 C 0.02 0.36 7.38 37.93 0.28 0.64 16 20 C 0.13 2.92 3.35 -66.81 -0.22 2.69 16 21 C -0.12 -2.44 6.09 -25.07 -0.15 -2.60 16 22 C -0.12 -2.04 6.56 -24.74 -0.16 -2.20 16 23 C -0.12 -1.91 6.83 -25.07 -0.17 -2.08 16 24 C -0.13 -2.34 6.25 -25.61 -0.16 -2.50 16 25 H 0.27 6.35 8.32 -40.82 -0.34 6.01 16 26 H 0.06 1.41 7.76 -51.93 -0.40 1.01 16 27 H 0.10 2.39 5.36 -51.93 -0.28 2.11 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.09 1.39 8.00 -51.93 -0.42 0.98 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 33 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.08 1.80 6.95 -51.93 -0.36 1.44 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 2.01 7.98 -51.93 -0.41 1.60 16 37 H 0.08 1.54 7.26 -51.93 -0.38 1.16 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.39 6.93 -51.93 -0.36 1.03 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 332.73 15.07 5.01 5.01 Total: -1.00 -28.11 332.73 -8.19 -36.30 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.76 Total: 7.53 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -0.64 Total: 0.96 kcal Atomic # 7 Polarization: -31.50 SS G_CDS: 0.39 Total: -31.11 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -1.16 Total: -31.69 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.04 Total: 13.00 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.11 -8.19 -36.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319367710.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.727 kcal (2) G-P(sol) polarization free energy of solvation -28.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds