Wall clock time and date at job start Tue Mar 31 2020 05:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86794 * 120.00116 * 2 1 4 4 H 1.48497 * 109.47537 * 239.99738 * 3 2 1 5 5 H 1.48496 * 109.47410 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46888 * 120.00098 * 3 2 1 7 7 C 1.40055 * 119.99526 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99336 * 180.02562 * 7 2 1 9 9 C 1.46371 * 120.00435 * 359.97438 * 7 2 1 10 10 O 1.21689 * 120.00019 * 5.60524 * 9 7 2 11 11 N 1.34776 * 120.00092 * 185.60336 * 9 7 2 12 12 C 1.46929 * 120.63063 * 174.75159 * 11 9 7 13 13 C 1.53194 * 108.77287 * 233.63083 * 12 11 9 14 14 C 1.53040 * 109.31225 * 305.36578 * 13 12 11 15 15 O 1.42895 * 109.46058 * 181.38815 * 14 13 12 16 16 C 1.42895 * 114.00445 * 149.96612 * 15 14 13 17 17 C 1.53005 * 109.47681 * 179.97438 * 16 15 14 18 18 H 1.09002 * 110.82741 * 308.65430 * 17 16 15 19 19 C 1.54805 * 110.90774 * 185.00116 * 17 16 15 20 20 C 1.54096 * 104.30478 * 220.98723 * 19 17 16 21 21 O 1.43743 * 107.29446 * 357.91143 * 20 19 17 22 22 C 1.44373 * 106.97618 * 26.50915 * 21 20 19 23 23 C 1.53035 * 109.53021 * 61.37148 * 14 13 12 24 24 C 1.46927 * 120.62968 * 354.77198 * 11 9 7 25 25 H 0.96996 * 119.99937 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.58701 * 113.84219 * 12 11 9 27 27 H 1.09000 * 109.69987 * 353.48427 * 12 11 9 28 28 H 1.09001 * 109.49802 * 185.41082 * 13 12 11 29 29 H 1.08999 * 109.49740 * 65.31480 * 13 12 11 30 30 H 1.09001 * 109.45405 * 301.35584 * 14 13 12 31 31 H 1.09004 * 109.46849 * 60.00281 * 16 15 14 32 32 H 1.08998 * 109.47365 * 300.00398 * 16 15 14 33 33 H 1.09009 * 110.48586 * 102.25110 * 19 17 16 34 34 H 1.08993 * 110.49223 * 339.73480 * 19 17 16 35 35 H 1.09002 * 109.88087 * 117.33110 * 20 19 17 36 36 H 1.09002 * 109.88262 * 238.48208 * 20 19 17 37 37 H 1.08994 * 110.61889 * 78.44141 * 22 21 20 38 38 H 1.09008 * 110.61841 * 201.44649 * 22 21 20 39 39 H 1.09001 * 109.49593 * 58.58014 * 23 14 13 40 40 H 1.09002 * 109.50108 * 178.67886 * 23 14 13 41 41 H 1.09002 * 109.58397 * 246.15303 * 24 11 9 42 42 H 1.08996 * 109.58854 * 6.43548 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2124 5 1 1.2758 2.7464 0.0006 6 1 3.0945 1.6962 1.2126 7 6 2.0069 -1.2130 -0.0005 8 1 3.0869 -1.2129 -0.0001 9 6 1.2750 -2.4806 -0.0005 10 8 0.0624 -2.4831 -0.1030 11 7 1.9441 -3.6450 0.1129 12 6 1.2182 -4.9171 0.2298 13 6 1.7169 -5.6566 1.4754 14 6 3.2382 -5.8055 1.4004 15 8 3.7032 -6.5233 2.5451 16 6 4.8828 -7.2942 2.3082 17 6 5.2880 -8.0156 3.5952 18 1 5.3419 -7.3172 4.4304 19 6 6.6319 -8.7614 3.4109 20 6 6.4243 -10.1050 4.1364 21 8 5.1080 -10.0802 4.7132 22 6 4.3128 -9.1814 3.9106 23 6 3.8869 -4.4198 1.3693 24 6 3.4131 -3.6664 0.1224 25 1 -0.4850 0.8400 -0.0004 26 1 1.4031 -5.5260 -0.6551 27 1 0.1497 -4.7232 0.3233 28 1 1.2565 -6.6436 1.5212 29 1 1.4504 -5.0886 2.3667 30 1 3.5053 -6.3520 0.4959 31 1 5.6908 -6.6341 1.9924 32 1 4.6865 -8.0279 1.5264 33 1 7.4456 -8.2009 3.8714 34 1 6.8347 -8.9265 2.3528 35 1 6.5015 -10.9266 3.4243 36 1 7.1711 -10.2213 4.9219 37 1 3.9917 -9.6703 2.9908 38 1 3.4530 -8.8211 4.4754 39 1 3.5998 -3.8636 2.2617 40 1 4.9713 -4.5263 1.3396 41 1 3.7770 -4.1734 -0.7713 42 1 3.7933 -2.6451 0.1435 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320512073.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:00 Heat of formation + Delta-G solvation = -135.285039 kcal Electronic energy + Delta-G solvation = -22610.274226 eV Core-core repulsion = 19169.021955 eV Total energy + Delta-G solvation = -3441.252271 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.81541 -38.94228 -37.37339 -35.18169 -33.10427 -32.54845 -31.04660 -30.41346 -29.56042 -26.50669 -25.69845 -23.69822 -22.74702 -22.61233 -20.97891 -20.48969 -18.88700 -17.19690 -16.72190 -16.38743 -16.11604 -15.66929 -15.49994 -14.90644 -14.53492 -14.30608 -13.96154 -13.89885 -13.74421 -13.19700 -13.01903 -12.52643 -12.37662 -11.98638 -11.82304 -11.71841 -11.56581 -11.30883 -11.22620 -11.05094 -10.94412 -10.80675 -10.73296 -10.70676 -10.26977 -10.12861 -10.11311 -9.94728 -9.26366 -8.87108 -7.60962 -7.28190 -6.21941 -4.67115 3.13700 3.18909 3.20376 3.44531 3.79650 4.06403 4.25700 4.47051 4.51999 4.54715 4.63965 4.82438 4.96310 5.01773 5.10924 5.20909 5.28424 5.32549 5.38055 5.41526 5.51916 5.56846 5.63433 5.64752 5.70501 5.81182 5.87368 5.95573 6.10093 6.14711 6.23318 6.44045 6.51965 6.53618 6.58384 6.75218 7.31149 7.43438 7.58811 8.10464 8.31723 8.99711 9.40041 10.55121 10.73558 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.033872 B = 0.003138 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.438703 B = 8920.351561 C = 9408.031818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.560 3.440 10 O -0.577 6.577 11 N -0.644 5.644 12 C 0.124 3.876 13 C -0.127 4.127 14 C 0.096 3.904 15 O -0.383 6.383 16 C 0.073 3.927 17 C -0.120 4.120 18 H 0.095 0.905 19 C -0.151 4.151 20 C 0.047 3.953 21 O -0.381 6.381 22 C 0.055 3.945 23 C -0.154 4.154 24 C 0.124 3.876 25 H 0.269 0.731 26 H 0.041 0.959 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.040 0.960 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.609 -15.333 4.589 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.090 0.910 9 C 0.366 3.634 10 O -0.460 6.460 11 N -0.382 5.382 12 C -0.001 4.001 13 C -0.165 4.165 14 C 0.039 3.961 15 O -0.303 6.303 16 C -0.004 4.004 17 C -0.139 4.139 18 H 0.113 0.887 19 C -0.188 4.188 20 C -0.030 4.030 21 O -0.300 6.300 22 C -0.021 4.021 23 C -0.193 4.193 24 C 0.000 4.000 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.117 0.883 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.572 -15.322 4.881 20.411 hybrid contribution 0.913 0.861 -0.423 1.325 sum 13.485 -14.461 4.458 20.269 Atomic orbital electron populations 1.69997 1.07080 1.27462 1.35114 1.25729 0.94618 1.00301 0.92574 0.86450 0.79868 0.81104 0.79458 1.19239 1.20529 1.19244 1.20937 0.93508 0.89279 1.54451 0.90962 1.18238 0.86885 0.82180 0.76099 1.90591 1.14453 1.86081 1.54887 1.48229 1.04593 1.06038 1.79350 1.21096 0.98885 0.85809 0.94287 1.22023 0.93071 1.00712 1.00729 1.22134 0.94981 0.91668 0.87345 1.87916 1.42812 1.63265 1.36258 1.22393 0.88472 0.93779 0.95761 1.22746 0.94534 0.97672 0.98923 0.88673 1.22932 0.97750 0.96335 1.01832 1.23135 0.85774 0.96531 0.97521 1.88878 1.21836 1.66403 1.52895 1.23658 0.94594 0.88228 0.95625 1.22456 0.99342 0.96376 1.01102 1.21383 0.82717 1.01540 0.94397 0.91990 0.94048 0.89266 0.91461 0.90936 0.92642 0.93001 0.93342 0.90086 0.90404 0.92410 0.89881 0.92098 0.88312 0.90706 0.92074 0.94146 0.88483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.90 11.84 55.55 0.66 -22.25 16 2 C 0.09 2.42 5.50 -17.37 -0.10 2.33 16 3 Si 0.91 19.87 29.56 -169.99 -5.02 14.85 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.55 -15.12 8.88 -35.63 -0.32 -15.44 16 8 H 0.07 1.81 5.64 -52.48 -0.30 1.51 16 9 C 0.56 15.86 7.61 -12.99 -0.10 15.76 16 10 O -0.58 -18.64 14.48 5.20 0.08 -18.57 16 11 N -0.64 -14.51 2.97 -174.43 -0.52 -15.03 16 12 C 0.12 2.39 6.41 -3.71 -0.02 2.37 16 13 C -0.13 -2.06 5.73 -26.61 -0.15 -2.21 16 14 C 0.10 1.39 2.57 -26.69 -0.07 1.32 16 15 O -0.38 -5.23 9.95 -35.23 -0.35 -5.58 16 16 C 0.07 0.75 5.09 37.16 0.19 0.94 16 17 C -0.12 -1.13 3.39 -88.49 -0.30 -1.43 16 18 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 19 C -0.15 -1.09 6.59 -25.21 -0.17 -1.26 16 20 C 0.05 0.37 7.70 37.73 0.29 0.67 16 21 O -0.38 -4.24 11.52 -35.23 -0.41 -4.65 16 22 C 0.06 0.56 7.15 38.34 0.27 0.83 16 23 C -0.15 -2.38 5.69 -26.61 -0.15 -2.53 16 24 C 0.12 2.26 6.35 -3.71 -0.02 2.24 16 25 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.09 1.94 7.04 -51.93 -0.37 1.58 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.06 0.73 7.79 -51.93 -0.40 0.33 16 31 H 0.05 0.50 7.84 -51.93 -0.41 0.10 16 32 H 0.05 0.45 7.93 -51.93 -0.41 0.04 16 33 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.08 0.48 7.86 -51.93 -0.41 0.07 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.57 7.93 -51.93 -0.41 0.16 16 38 H 0.10 1.03 8.14 -51.92 -0.42 0.60 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.06 0.80 7.84 -51.93 -0.41 0.39 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.10 1.86 5.30 -51.93 -0.28 1.59 16 LS Contribution 335.20 15.07 5.05 5.05 Total: -1.00 -33.97 335.20 -7.91 -41.88 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.75 Total: 0.71 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -0.64 Total: 3.59 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.14 Total: -37.27 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.68 Total: -28.80 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.97 -7.91 -41.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320512073.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.409 kcal (2) G-P(sol) polarization free energy of solvation -33.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds