Wall clock time and date at job start Tue Mar 31 2020 05:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86803 * 120.00357 * 2 1 4 4 H 1.48493 * 109.46921 * 239.99790 * 3 2 1 5 5 H 1.48500 * 109.46827 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47000 * 119.99949 * 3 2 1 7 7 C 1.40047 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00009 * 180.02562 * 7 2 1 9 9 C 1.46376 * 120.00454 * 0.02562 * 7 2 1 10 10 O 1.21691 * 119.99583 * 5.56225 * 9 7 2 11 11 N 1.34771 * 120.00532 * 185.57441 * 9 7 2 12 12 C 1.46917 * 120.63409 * 174.74999 * 11 9 7 13 13 C 1.53197 * 108.77830 * 233.58128 * 12 11 9 14 14 C 1.53038 * 109.30889 * 305.36656 * 13 12 11 15 15 O 1.42905 * 109.45534 * 181.38478 * 14 13 12 16 16 C 1.42901 * 113.99709 * 149.97399 * 15 14 13 17 17 C 1.53006 * 109.46805 * 179.97438 * 16 15 14 18 18 H 1.08996 * 110.98917 * 57.74225 * 17 16 15 19 19 C 1.55456 * 111.14540 * 181.91747 * 17 16 15 20 20 C 1.54384 * 102.18297 * 151.98918 * 19 17 16 21 21 O 1.43234 * 107.66727 * 338.74159 * 20 19 17 22 22 C 1.43647 * 109.97141 * 358.24307 * 21 20 19 23 23 C 1.53031 * 109.53054 * 61.36922 * 14 13 12 24 24 C 1.46931 * 120.62939 * 354.71890 * 11 9 7 25 25 H 0.96999 * 119.99363 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.59134 * 113.79658 * 12 11 9 27 27 H 1.09000 * 109.70343 * 353.43985 * 12 11 9 28 28 H 1.08996 * 109.49830 * 185.41104 * 13 12 11 29 29 H 1.08996 * 109.49404 * 65.31648 * 13 12 11 30 30 H 1.08996 * 109.46137 * 301.35219 * 14 13 12 31 31 H 1.08994 * 109.47438 * 59.99616 * 16 15 14 32 32 H 1.09003 * 109.47037 * 299.99261 * 16 15 14 33 33 H 1.08998 * 110.83153 * 33.84277 * 19 17 16 34 34 H 1.08999 * 110.92024 * 270.18169 * 19 17 16 35 35 H 1.08998 * 109.82927 * 219.18106 * 20 19 17 36 36 H 1.09001 * 109.82617 * 98.30241 * 20 19 17 37 37 H 1.08998 * 110.30926 * 143.34739 * 22 21 20 38 38 H 1.09000 * 110.30697 * 265.51138 * 22 21 20 39 39 H 1.09005 * 109.49886 * 58.57768 * 23 14 13 40 40 H 1.08998 * 109.50008 * 178.67044 * 23 14 13 41 41 H 1.08996 * 109.59074 * 246.20567 * 24 11 9 42 42 H 1.09000 * 109.58394 * 6.49217 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.0946 1.6962 -1.2124 5 1 1.2759 2.7464 -0.0006 6 1 3.0946 1.6963 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0624 -2.4830 -0.1021 11 7 1.9440 -3.6450 0.1144 12 6 1.2181 -4.9170 0.2314 13 6 1.7172 -5.6569 1.4765 14 6 3.2384 -5.8059 1.4009 15 8 3.7038 -6.5240 2.5453 16 6 4.8834 -7.2948 2.3076 17 6 5.2889 -8.0166 3.5944 18 1 4.4820 -8.6545 3.9551 19 6 6.5978 -8.8305 3.3922 20 6 7.1980 -8.8409 4.8146 21 8 6.6228 -7.7460 5.5371 22 6 5.7333 -7.0084 4.6838 23 6 3.8873 -4.4202 1.3699 24 6 3.4131 -3.6666 0.1233 25 1 -0.4849 0.8401 -0.0004 26 1 1.4026 -5.5258 -0.6538 27 1 0.1496 -4.7231 0.3253 28 1 1.2567 -6.6437 1.5223 29 1 1.4511 -5.0891 2.3681 30 1 3.5053 -6.3521 0.4962 31 1 5.6912 -6.6349 1.9916 32 1 4.6866 -8.0284 1.5258 33 1 7.2645 -8.3252 2.6935 34 1 6.3780 -9.8439 3.0564 35 1 8.2799 -8.7203 4.7602 36 1 6.9552 -9.7802 5.3115 37 1 4.8702 -6.6579 5.2497 38 1 6.2561 -6.1666 4.2297 39 1 3.6006 -3.8642 2.2625 40 1 4.9716 -4.5268 1.3398 41 1 3.7765 -4.1733 -0.7706 42 1 3.7933 -2.6453 0.1446 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320512074.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:03 Heat of formation + Delta-G solvation = -135.241835 kcal Electronic energy + Delta-G solvation = -22680.848899 eV Core-core repulsion = 19239.598501 eV Total energy + Delta-G solvation = -3441.250398 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.81189 -38.94024 -37.37637 -35.18328 -33.10416 -32.54567 -31.05457 -30.41051 -29.61148 -26.50302 -25.74445 -23.69329 -22.72682 -22.43532 -21.00914 -20.55781 -18.90084 -17.29337 -16.79657 -16.37639 -16.15754 -15.55834 -15.43960 -14.72223 -14.52965 -14.30969 -13.98360 -13.92167 -13.76117 -13.34026 -12.94315 -12.54334 -12.44067 -11.98170 -11.83427 -11.67436 -11.50888 -11.40990 -11.15617 -11.14138 -10.94896 -10.85022 -10.73661 -10.68658 -10.26800 -10.13030 -10.10398 -9.75050 -9.27413 -8.86787 -7.60855 -7.28205 -6.21702 -4.66899 3.14187 3.19368 3.20831 3.42058 3.75258 4.06708 4.18916 4.48912 4.52090 4.55210 4.65123 4.87938 4.93968 4.99279 5.14555 5.16881 5.29955 5.30906 5.38851 5.42100 5.50676 5.58747 5.62339 5.66700 5.75053 5.81063 5.88903 5.96542 6.09325 6.14534 6.23047 6.44107 6.51801 6.53452 6.74451 6.75763 7.30124 7.43717 7.58831 8.10653 8.31874 9.00003 9.40113 10.55276 10.73714 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.026333 B = 0.003364 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.045915 B = 8321.860492 C = 8975.710927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.560 3.440 10 O -0.578 6.578 11 N -0.643 5.643 12 C 0.124 3.876 13 C -0.127 4.127 14 C 0.096 3.904 15 O -0.383 6.383 16 C 0.074 3.926 17 C -0.121 4.121 18 H 0.094 0.906 19 C -0.150 4.150 20 C 0.052 3.948 21 O -0.388 6.388 22 C 0.061 3.939 23 C -0.154 4.154 24 C 0.124 3.876 25 H 0.269 0.731 26 H 0.041 0.959 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.040 0.960 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.510 -15.421 4.697 21.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.090 0.910 9 C 0.366 3.634 10 O -0.460 6.460 11 N -0.382 5.382 12 C -0.001 4.001 13 C -0.165 4.165 14 C 0.039 3.961 15 O -0.302 6.302 16 C -0.003 4.003 17 C -0.140 4.140 18 H 0.112 0.888 19 C -0.188 4.188 20 C -0.025 4.025 21 O -0.307 6.307 22 C -0.016 4.016 23 C -0.193 4.193 24 C 0.000 4.000 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.586 -15.237 5.019 20.390 hybrid contribution 0.733 0.611 -0.476 1.066 sum 13.319 -14.626 4.543 20.297 Atomic orbital electron populations 1.70003 1.07080 1.27454 1.35124 1.25728 0.94619 1.00301 0.92566 0.86451 0.79871 0.81099 0.79471 1.19243 1.20530 1.19220 1.20937 0.93514 0.89277 1.54442 0.90955 1.18240 0.86885 0.82179 0.76099 1.90591 1.14456 1.86080 1.54890 1.48225 1.04591 1.06033 1.79348 1.21094 0.98881 0.85815 0.94281 1.22022 0.93073 1.00698 1.00736 1.22138 0.94975 0.91665 0.87335 1.87917 1.42781 1.63273 1.36270 1.22331 0.88435 0.93781 0.95769 1.22872 0.97892 0.97311 0.95898 0.88766 1.23153 0.96322 1.01434 0.97858 1.23079 0.97736 0.90575 0.91084 1.88409 1.61977 1.42946 1.37392 1.23411 0.93059 0.93805 0.91279 1.22458 0.99335 0.96361 1.01132 1.21383 0.82713 1.01549 0.94395 0.91996 0.94060 0.89273 0.91484 0.90932 0.92625 0.93111 0.93122 0.90223 0.89718 0.91475 0.91332 0.89020 0.91906 0.90672 0.92075 0.94146 0.88471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.92 11.84 55.55 0.66 -22.26 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 3 Si 0.91 19.90 29.56 -169.99 -5.02 14.88 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.55 -15.13 8.88 -35.63 -0.32 -15.45 16 8 H 0.07 1.81 5.64 -52.49 -0.30 1.52 16 9 C 0.56 15.86 7.61 -12.99 -0.10 15.76 16 10 O -0.58 -18.64 14.48 5.20 0.08 -18.57 16 11 N -0.64 -14.49 2.97 -174.43 -0.52 -15.01 16 12 C 0.12 2.39 6.41 -3.71 -0.02 2.37 16 13 C -0.13 -2.05 5.73 -26.61 -0.15 -2.21 16 14 C 0.10 1.39 2.57 -26.70 -0.07 1.32 16 15 O -0.38 -5.20 9.84 -35.23 -0.35 -5.55 16 16 C 0.07 0.76 5.20 37.16 0.19 0.95 16 17 C -0.12 -1.12 3.38 -88.29 -0.30 -1.42 16 18 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 19 C -0.15 -1.07 6.52 -24.70 -0.16 -1.23 16 20 C 0.05 0.42 7.79 37.88 0.30 0.72 16 21 O -0.39 -4.50 11.36 -35.23 -0.40 -4.90 16 22 C 0.06 0.65 7.13 38.18 0.27 0.92 16 23 C -0.15 -2.38 5.69 -26.62 -0.15 -2.53 16 24 C 0.12 2.26 6.35 -3.71 -0.02 2.24 16 25 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.09 1.94 7.04 -51.93 -0.37 1.58 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.06 0.73 7.79 -51.93 -0.40 0.33 16 31 H 0.05 0.49 7.80 -51.93 -0.41 0.09 16 32 H 0.05 0.47 8.08 -51.93 -0.42 0.05 16 33 H 0.08 0.52 8.03 -51.93 -0.42 0.10 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.67 8.00 -51.93 -0.42 0.25 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.06 0.79 7.84 -51.93 -0.41 0.39 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.10 1.86 5.30 -51.93 -0.28 1.59 16 LS Contribution 335.37 15.07 5.05 5.05 Total: -1.00 -33.98 335.37 -7.90 -41.88 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.77 Total: 0.70 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -0.63 Total: 3.78 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.14 Total: -37.27 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.67 Total: -29.01 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.98 -7.90 -41.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320512074.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.365 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds