Wall clock time and date at job start Tue Mar 31 2020 05:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00289 * 2 1 4 4 H 1.48506 * 109.46983 * 240.00136 * 3 2 1 5 5 H 1.48498 * 109.47270 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47047 * 120.00415 * 3 2 1 7 7 C 1.37881 * 119.99467 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99611 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00454 * 0.02562 * 7 2 1 10 10 C 1.53043 * 109.45791 * 300.06778 * 9 7 2 11 11 C 1.53194 * 109.31176 * 178.61104 * 10 9 7 12 12 N 1.46924 * 108.77554 * 54.63860 * 11 10 9 13 13 C 1.34773 * 120.63725 * 126.41206 * 12 11 10 14 14 O 1.21278 * 120.00523 * 175.84133 * 13 12 11 15 15 C 1.50704 * 119.99616 * 355.83669 * 13 12 11 16 16 O 1.42901 * 109.54240 * 57.24710 * 15 13 12 17 17 C 1.53171 * 109.54623 * 296.98377 * 15 13 12 18 18 C 1.53090 * 109.16578 * 183.15393 * 17 15 13 19 19 O 1.42898 * 109.41740 * 57.60055 * 18 17 15 20 20 C 1.42900 * 114.10037 * 298.84899 * 19 18 17 21 21 C 1.53091 * 109.41672 * 61.15561 * 20 19 18 22 22 C 1.46927 * 118.73448 * 306.38824 * 12 11 10 23 23 C 1.53035 * 109.46357 * 180.02562 * 9 7 2 24 24 H 0.97000 * 119.99859 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.44902 * 60.02614 * 9 7 2 26 26 H 1.09001 * 109.49972 * 298.56822 * 10 9 7 27 27 H 1.09003 * 109.49610 * 58.66297 * 10 9 7 28 28 H 1.08994 * 109.58995 * 294.84814 * 11 10 9 29 29 H 1.09001 * 109.58585 * 174.42182 * 11 10 9 30 30 H 0.96703 * 114.00050 * 315.94563 * 16 15 13 31 31 H 1.09005 * 109.52012 * 303.05265 * 17 15 13 32 32 H 1.08997 * 109.52497 * 63.24247 * 17 15 13 33 33 H 1.09005 * 109.47681 * 297.62328 * 18 17 15 34 34 H 1.09000 * 109.48404 * 177.59292 * 18 17 15 35 35 H 1.09001 * 109.47896 * 301.17106 * 20 19 18 36 36 H 1.09005 * 109.49480 * 181.14404 * 20 19 18 37 37 H 1.09004 * 109.52324 * 182.48915 * 21 20 19 38 38 H 1.08999 * 109.52185 * 62.30023 * 21 20 19 39 39 H 1.09002 * 109.58840 * 293.82323 * 22 12 11 40 40 H 1.09003 * 109.70696 * 173.46567 * 22 12 11 41 41 H 1.09003 * 109.49404 * 301.33212 * 23 9 7 42 42 H 1.08999 * 109.49678 * 61.43107 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 0.3694 -2.5800 1.2467 11 6 -0.4210 -3.8921 1.2247 12 7 0.5216 -5.0096 1.0783 13 6 0.5103 -6.0365 1.9511 14 8 1.2412 -6.9885 1.7769 15 6 -0.4104 -6.0016 3.1437 16 8 -1.7604 -5.8486 2.7010 17 6 -0.0303 -4.8269 4.0503 18 6 -0.9188 -4.8462 5.2969 19 8 -0.7685 -6.0988 5.9680 20 6 -1.1541 -7.2303 5.1849 21 6 -0.2750 -7.3068 3.9339 22 6 1.4764 -4.9866 -0.0382 23 6 2.2455 -3.6623 -0.0015 24 1 -0.4850 0.8401 0.0004 25 1 0.6251 -2.5561 -0.8923 26 1 0.9965 -2.5479 2.1377 27 1 -0.3231 -1.7383 1.2582 28 1 -1.1148 -3.8868 0.3842 29 1 -0.9746 -4.0009 2.1574 30 1 -1.8735 -5.1872 2.0046 31 1 1.0147 -4.9186 4.3464 32 1 -0.1768 -3.8899 3.5131 33 1 -1.9601 -4.7139 5.0031 34 1 -0.6242 -4.0377 5.9659 35 1 -2.1985 -7.1291 4.8897 36 1 -1.0291 -8.1394 5.7731 37 1 -0.5966 -8.1433 3.3133 38 1 0.7650 -7.4486 4.2276 39 1 0.9373 -5.0704 -0.9819 40 1 2.1751 -5.8176 0.0585 41 1 2.8887 -3.5910 -0.8786 42 1 2.8547 -3.6198 0.9014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320514272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:39 Heat of formation + Delta-G solvation = -126.515352 kcal Electronic energy + Delta-G solvation = -24250.067400 eV Core-core repulsion = 20809.195411 eV Total energy + Delta-G solvation = -3440.871989 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.00534 -38.72632 -37.02545 -36.47425 -33.61499 -32.12056 -31.52326 -31.01391 -30.21146 -26.81706 -25.31849 -23.80661 -23.04463 -22.56122 -20.71863 -20.16169 -18.97053 -17.27447 -16.58688 -16.52544 -16.22971 -15.96525 -15.22598 -14.82504 -14.73487 -14.60276 -14.27771 -13.81056 -13.26921 -13.05858 -12.84995 -12.78323 -12.36849 -12.34034 -12.20664 -11.75868 -11.65335 -11.51595 -11.23208 -10.99898 -10.77548 -10.61076 -10.52577 -10.26008 -10.19221 -9.82630 -9.74405 -9.30556 -9.24083 -8.97974 -8.48667 -8.20136 -6.13077 -4.19296 2.64392 3.18445 3.23937 3.29167 3.32179 3.83853 4.07418 4.33326 4.40653 4.58702 4.71333 4.92480 5.11785 5.20310 5.23823 5.36990 5.43598 5.54616 5.62547 5.65139 5.71764 5.73502 5.86711 5.95631 5.99633 6.01773 6.06290 6.16057 6.28735 6.50264 6.73106 6.88554 6.95708 7.10285 7.14778 7.34082 7.53402 7.68974 7.78156 7.91058 8.28361 8.28958 8.83733 9.46549 10.92572 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.023959 B = 0.004960 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.397557 B = 5643.306649 C = 6271.523780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.050 3.950 10 C -0.123 4.123 11 C 0.076 3.924 12 N -0.596 5.596 13 C 0.490 3.510 14 O -0.544 6.544 15 C 0.125 3.875 16 O -0.555 6.555 17 C -0.189 4.189 18 C 0.069 3.931 19 O -0.385 6.385 20 C 0.065 3.935 21 C -0.126 4.126 22 C 0.110 3.890 23 C -0.124 4.124 24 H 0.262 0.738 25 H 0.028 0.972 26 H 0.042 0.958 27 H 0.108 0.892 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.383 0.617 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.059 0.941 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.195 -9.328 6.749 12.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.031 3.969 10 C -0.161 4.161 11 C -0.046 4.046 12 N -0.329 5.329 13 C 0.276 3.724 14 O -0.423 6.423 15 C 0.082 3.918 16 O -0.366 6.366 17 C -0.227 4.227 18 C -0.007 4.007 19 O -0.304 6.304 20 C -0.012 4.012 21 C -0.164 4.164 22 C -0.012 4.012 23 C -0.162 4.162 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.061 0.939 27 H 0.126 0.874 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.237 0.763 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.078 0.922 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.001 -10.153 7.253 13.103 hybrid contribution 0.530 1.579 -0.888 1.887 sum -3.471 -8.574 6.366 11.229 Atomic orbital electron populations 1.69801 1.05857 1.26734 1.50715 1.24946 0.94885 0.99087 0.94913 0.86663 0.79652 0.83062 0.78682 1.20275 1.21250 1.20296 1.21148 0.92955 0.90472 1.50620 0.92701 1.18620 0.92616 0.91826 0.93835 1.22047 1.00101 0.94045 0.99950 1.22554 0.92430 0.88608 1.00981 1.48309 1.35915 1.20637 1.28018 1.21223 0.84477 0.82496 0.84209 1.90646 1.43000 1.33406 1.75200 1.21372 0.81500 0.97353 0.91623 1.86568 1.25203 1.64944 1.59934 1.23092 1.02297 0.99247 0.98053 1.22482 0.98872 0.86222 0.93150 1.87898 1.87373 1.14509 1.40602 1.22549 0.97818 0.89176 0.91632 1.22018 1.02370 0.95347 0.96636 1.21750 0.91710 0.99863 0.87831 1.22019 0.98941 0.94049 1.01160 0.92818 0.95352 0.93947 0.87434 0.91083 0.90352 0.76289 0.89677 0.88323 0.92223 0.88525 0.92253 0.88773 0.89701 0.89130 0.91975 0.90281 0.91940 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.35 11.30 55.43 0.63 -22.73 16 2 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 3 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.51 -13.10 8.56 -34.44 -0.29 -13.40 16 8 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 9 C 0.05 1.11 2.06 -91.73 -0.19 0.92 16 10 C -0.12 -2.47 4.90 -26.61 -0.13 -2.60 16 11 C 0.08 1.21 4.18 -3.71 -0.02 1.19 16 12 N -0.60 -10.03 2.97 -172.77 -0.51 -10.54 16 13 C 0.49 8.36 6.72 -10.99 -0.07 8.28 16 14 O -0.54 -10.73 15.38 5.56 0.09 -10.65 16 15 C 0.13 1.79 0.66 -91.59 -0.06 1.73 16 16 O -0.55 -7.48 11.81 -35.23 -0.42 -7.90 16 17 C -0.19 -2.54 4.77 -26.60 -0.13 -2.66 16 18 C 0.07 0.84 6.70 37.20 0.25 1.09 16 19 O -0.39 -5.09 10.77 -35.23 -0.38 -5.47 16 20 C 0.06 0.76 6.69 37.20 0.25 1.01 16 21 C -0.13 -1.68 4.48 -26.59 -0.12 -1.80 16 22 C 0.11 1.93 6.42 -3.71 -0.02 1.90 16 23 C -0.12 -2.40 5.30 -26.61 -0.14 -2.54 16 24 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.87 7.78 -51.93 -0.40 0.47 16 27 H 0.11 2.42 6.03 -51.93 -0.31 2.11 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.08 1.07 2.94 -51.93 -0.15 0.92 16 30 H 0.38 4.65 5.33 45.56 0.24 4.90 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.10 1.34 4.74 -51.93 -0.25 1.10 16 33 H 0.06 0.69 7.82 -51.93 -0.41 0.28 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.69 7.82 -51.93 -0.41 0.28 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.09 1.27 7.99 -51.93 -0.41 0.85 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.08 1.39 7.04 -51.93 -0.37 1.03 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 316.66 15.07 4.77 4.77 Total: -1.00 -28.35 316.66 -7.43 -35.77 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -5.81 Total: 6.92 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -0.77 Total: -5.36 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.11 Total: -33.27 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.71 Total: -24.02 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.35 -7.43 -35.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320514272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.741 kcal (2) G-P(sol) polarization free energy of solvation -28.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds