Wall clock time and date at job start Tue Mar 31 2020 05:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.46707 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00417 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99529 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99805 * 180.02562 * 13 11 10 15 15 H 1.09007 * 109.55238 * 324.99594 * 14 13 11 16 16 C 1.53178 * 109.55892 * 85.20391 * 14 13 11 17 17 C 1.53088 * 109.24412 * 177.35217 * 16 14 13 18 18 O 1.43013 * 109.36914 * 301.86307 * 17 16 14 19 19 C 1.42206 * 114.24845 * 60.00127 * 18 17 16 20 20 C 1.54014 * 110.33600 * 178.24058 * 19 18 17 21 21 C 1.54605 * 103.89080 * 241.21583 * 20 19 18 22 22 O 1.44473 * 104.82523 * 23.87083 * 21 20 19 23 23 C 1.44544 * 105.35535 * 319.82437 * 22 21 20 24 24 C 1.52486 * 111.07288 * 300.73670 * 19 18 17 25 25 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 27 27 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 28 28 H 1.08996 * 109.46893 * 300.00088 * 10 9 7 29 29 H 1.08996 * 109.47396 * 60.00103 * 10 9 7 30 30 H 0.96998 * 120.00230 * 0.02562 * 13 11 10 31 31 H 1.08996 * 109.50864 * 297.28450 * 16 14 13 32 32 H 1.09007 * 109.50535 * 57.42680 * 16 14 13 33 33 H 1.09004 * 109.48852 * 61.82645 * 17 16 14 34 34 H 1.08996 * 109.49460 * 181.87159 * 17 16 14 35 35 H 1.09004 * 110.54138 * 359.81678 * 20 19 18 36 36 H 1.08995 * 110.54145 * 122.47007 * 20 19 18 37 37 H 1.09005 * 110.36529 * 142.70247 * 21 20 19 38 38 H 1.08997 * 110.36782 * 265.03056 * 21 20 19 39 39 H 1.09001 * 110.39778 * 281.23841 * 23 22 21 40 40 H 1.09003 * 110.39158 * 158.84637 * 23 22 21 41 41 H 1.08998 * 109.43021 * 295.88103 * 24 19 18 42 42 H 1.08998 * 109.60174 * 175.73876 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 8 0.2791 -4.9672 -0.0011 13 7 2.1658 -6.1343 -0.0018 14 6 1.4334 -7.4031 -0.0030 15 1 0.5221 -7.2988 0.5860 16 6 1.0730 -7.7858 -1.4417 17 6 0.3665 -9.1439 -1.4407 18 8 1.2219 -10.1230 -0.8450 19 6 1.5854 -9.8401 0.5003 20 6 2.4675 -10.9692 1.0652 21 6 1.6483 -11.5201 2.2551 22 8 0.2792 -11.1696 1.9551 23 6 0.3379 -9.8351 1.4029 24 6 2.3123 -8.5035 0.6023 25 1 -0.4849 -0.8401 0.0004 26 1 0.6248 -2.5571 0.8897 27 1 0.6241 -2.5567 -0.8903 28 1 2.8720 -3.6043 -0.8905 29 1 2.8720 -3.6044 0.8894 30 1 3.1358 -6.1343 -0.0015 31 1 0.4098 -7.0308 -1.8640 32 1 1.9819 -7.8487 -2.0402 33 1 -0.5582 -9.0723 -0.8680 34 1 0.1378 -9.4357 -2.4656 35 1 2.6222 -11.7451 0.3155 36 1 3.4235 -10.5730 1.4071 37 1 1.7568 -12.6027 2.3215 38 1 1.9657 -11.0484 3.1850 39 1 0.4483 -9.0990 2.1992 40 1 -0.5558 -9.6279 0.8143 41 1 3.2533 -8.5598 0.0552 42 1 2.5123 -8.2750 1.6492 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327665740.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:14 Heat of formation + Delta-G solvation = -146.387506 kcal Electronic energy + Delta-G solvation = -22814.464391 eV Core-core repulsion = 19372.730680 eV Total energy + Delta-G solvation = -3441.733710 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.12383 -39.31287 -37.85210 -35.29120 -33.79658 -32.86022 -31.88492 -30.54567 -29.89523 -27.37689 -25.35023 -24.14190 -23.58282 -22.23657 -21.22195 -20.13678 -19.61911 -17.48935 -17.08951 -16.51827 -16.38225 -15.93602 -15.75055 -15.59445 -15.14318 -14.72922 -14.49500 -13.92491 -13.71566 -13.52879 -13.38158 -13.06056 -12.54772 -12.34770 -12.17823 -12.11567 -11.82292 -11.61979 -11.52620 -11.45829 -11.19252 -10.83709 -10.58980 -10.23237 -10.14902 -10.14386 -9.97850 -9.79922 -9.27753 -8.95651 -8.55318 -8.30334 -6.34018 -4.04347 3.07385 3.26057 3.33594 3.43608 3.47466 3.60496 3.63063 4.03568 4.35112 4.45633 4.54231 4.55442 4.62566 4.70103 4.82175 4.89607 5.01983 5.07889 5.17072 5.29766 5.32484 5.34684 5.43712 5.45895 5.52268 5.53689 5.61202 5.70655 5.85494 6.00648 6.06885 6.07960 6.34369 6.57947 6.70470 6.93933 7.48748 7.53955 7.72717 8.17193 8.47502 8.61574 8.90064 9.69434 11.07003 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.038815 B = 0.002941 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.204017 B = 9516.787150 C = 9617.005894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 1.073 2.927 4 H -0.288 1.288 5 H -0.284 1.284 6 H -0.289 1.289 7 C -0.609 4.609 8 H 0.049 0.951 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.511 3.489 12 O -0.536 6.536 13 N -0.738 5.738 14 C 0.142 3.858 15 H 0.088 0.912 16 C -0.168 4.168 17 C 0.059 3.941 18 O -0.362 6.362 19 C 0.093 3.907 20 C -0.142 4.142 21 C 0.044 3.956 22 O -0.369 6.369 23 C 0.018 3.982 24 C -0.146 4.146 25 H 0.272 0.728 26 H 0.014 0.986 27 H 0.014 0.986 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.398 0.602 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.211 -23.655 1.337 24.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.901 3.099 4 H -0.215 1.215 5 H -0.210 1.210 6 H -0.215 1.215 7 C -0.647 4.647 8 H 0.068 0.932 9 C -0.013 4.013 10 C -0.163 4.163 11 C 0.299 3.701 12 O -0.412 6.412 13 N -0.391 5.391 14 C 0.037 3.963 15 H 0.106 0.894 16 C -0.207 4.207 17 C -0.018 4.018 18 O -0.281 6.281 19 C 0.053 3.947 20 C -0.180 4.180 21 C -0.033 4.033 22 O -0.287 6.287 23 C -0.059 4.059 24 C -0.184 4.184 25 H 0.083 0.917 26 H 0.032 0.968 27 H 0.033 0.967 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.232 0.768 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.118 0.882 41 H 0.100 0.900 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.987 -22.277 1.277 23.103 hybrid contribution 0.852 -1.278 0.026 1.536 sum 6.839 -23.555 1.303 24.562 Atomic orbital electron populations 1.70709 1.06918 1.31012 1.46039 1.25857 0.96579 1.02715 0.93807 0.83500 0.74586 0.75094 0.76708 1.21469 1.20972 1.21514 1.22057 0.94184 0.92000 1.56507 0.93240 1.19015 0.93817 0.91182 0.97290 1.21730 1.00445 0.91423 1.02735 1.21588 0.88667 0.85720 0.74088 1.90654 1.14476 1.87659 1.48377 1.46235 1.09974 1.05161 1.77757 1.20885 0.96048 0.83252 0.96098 0.89445 1.22628 1.02350 0.97927 0.97763 1.22687 0.92551 0.87566 0.98960 1.87891 1.68030 1.47059 1.25148 1.22296 0.94129 0.94392 0.83914 1.22941 0.98636 0.98014 0.98386 1.23479 0.81907 1.01292 0.96594 1.89182 1.25495 1.31115 1.82939 1.24124 0.99501 0.85634 0.96674 1.22408 0.99762 0.93579 1.02672 0.91707 0.96762 0.96745 0.90057 0.90061 0.76819 0.89795 0.90734 0.92514 0.88095 0.89004 0.89218 0.88688 0.91949 0.91029 0.88230 0.89977 0.89797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.78 13.65 55.43 0.76 -28.02 16 2 C 0.01 0.43 5.46 -17.82 -0.10 0.34 16 3 Si 1.07 25.44 29.90 -169.99 -5.08 20.36 16 4 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.61 -17.47 9.11 -34.44 -0.31 -17.78 16 8 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16 9 C 0.02 0.65 3.57 -27.88 -0.10 0.55 16 10 C -0.12 -2.47 5.64 -27.88 -0.16 -2.63 16 11 C 0.51 9.46 7.80 -10.99 -0.09 9.37 16 12 O -0.54 -12.12 15.65 5.56 0.09 -12.03 16 13 N -0.74 -9.75 5.09 -53.57 -0.27 -10.03 16 14 C 0.14 1.68 2.33 -67.69 -0.16 1.52 16 15 H 0.09 1.20 7.03 -51.92 -0.37 0.84 16 16 C -0.17 -1.91 5.70 -26.59 -0.15 -2.06 16 17 C 0.06 0.60 6.60 37.20 0.25 0.84 16 18 O -0.36 -3.93 10.18 -35.23 -0.36 -4.29 16 19 C 0.09 0.87 1.04 -89.84 -0.09 0.78 16 20 C -0.14 -1.06 6.53 -25.36 -0.17 -1.22 16 21 C 0.04 0.34 7.64 38.00 0.29 0.63 16 22 O -0.37 -4.13 11.65 -35.23 -0.41 -4.54 16 23 C 0.02 0.18 5.91 37.67 0.22 0.40 16 24 C -0.15 -1.29 4.06 -26.85 -0.11 -1.40 16 25 H 0.27 8.72 7.22 -40.82 -0.29 8.43 16 26 H 0.01 0.41 7.97 -51.93 -0.41 -0.01 16 27 H 0.01 0.41 7.97 -51.93 -0.41 0.00 16 28 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 30 H 0.40 4.09 8.61 -40.82 -0.35 3.74 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.56 6.23 -51.93 -0.32 0.24 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 0.70 7.99 -51.93 -0.41 0.29 16 36 H 0.09 0.50 7.71 -51.93 -0.40 0.10 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.69 7.76 -51.93 -0.40 0.29 16 40 H 0.10 1.04 6.01 -51.93 -0.31 0.73 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.67 8.03 -51.93 -0.42 0.26 16 LS Contribution 334.22 15.07 5.04 5.04 Total: -1.00 -35.18 334.22 -7.61 -42.79 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.69 Total: 1.40 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -0.67 Total: -10.66 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.48 Total: -38.05 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.68 Total: -20.87 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.08 Total: 20.36 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.18 -7.61 -42.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327665740.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.600 kcal (2) G-P(sol) polarization free energy of solvation -35.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds