Wall clock time and date at job start Tue Mar 31 2020 05:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 H 1.09005 * 109.56008 * 34.79419 * 14 13 11 16 16 C 1.53181 * 109.56072 * 274.47309 * 14 13 11 17 17 C 1.53094 * 109.27999 * 182.69908 * 16 14 13 18 18 O 1.43021 * 109.37194 * 58.07667 * 17 16 14 19 19 C 1.42218 * 114.18818 * 299.95988 * 18 17 16 20 20 C 1.54312 * 110.18120 * 181.56955 * 19 18 17 21 21 C 1.55097 * 101.97925 * 98.24564 * 20 19 18 22 22 O 1.44428 * 103.55658 * 36.61887 * 21 20 19 23 23 C 1.43879 * 106.99102 * 320.24198 * 22 21 20 24 24 C 1.52500 * 110.93694 * 59.50330 * 19 18 17 25 25 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 27 27 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 28 28 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 29 29 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 30 30 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 31 31 H 1.09008 * 109.50471 * 302.64237 * 16 14 13 32 32 H 1.09000 * 109.50514 * 62.75879 * 16 14 13 33 33 H 1.08993 * 109.48638 * 298.10978 * 17 16 14 34 34 H 1.08998 * 109.50240 * 178.05597 * 17 16 14 35 35 H 1.09002 * 110.93066 * 216.41620 * 20 19 18 36 36 H 1.09003 * 110.92677 * 340.07476 * 20 19 18 37 37 H 1.09009 * 110.60654 * 278.09878 * 21 20 19 38 38 H 1.09004 * 110.60849 * 155.13496 * 21 20 19 39 39 H 1.08997 * 109.91194 * 267.02802 * 23 22 21 40 40 H 1.08996 * 109.90675 * 145.77125 * 23 22 21 41 41 H 1.08995 * 109.52262 * 183.96841 * 24 19 18 42 42 H 1.09004 * 109.51740 * 63.79502 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5287 -2.6364 0.0022 12 8 6.1350 -1.5861 0.0018 13 7 6.2026 -3.8036 0.0037 14 6 7.6675 -3.8035 0.0042 15 1 8.0322 -2.9594 0.5896 16 6 8.1809 -3.6924 -1.4347 17 6 9.7103 -3.7607 -1.4325 18 8 10.1295 -4.9869 -0.8275 19 6 9.7020 -5.1482 0.5193 20 6 10.2360 -6.4781 1.0917 21 6 11.4883 -6.0103 1.8782 22 8 11.0861 -4.7371 2.4288 23 6 10.3201 -4.0633 1.4143 24 6 8.1805 -5.1120 0.6162 25 1 -0.4849 0.8400 -0.0004 26 1 3.8746 -0.6799 0.8911 27 1 3.8752 -0.6803 -0.8888 28 1 3.6587 -3.1509 -0.8875 29 1 3.6580 -3.1497 0.8925 30 1 5.7176 -4.6436 0.0044 31 1 7.7808 -4.5145 -2.0284 32 1 7.8597 -2.7432 -1.8635 33 1 10.1109 -2.9202 -0.8660 34 1 10.0780 -3.7167 -2.4576 35 1 9.5057 -6.9359 1.7590 36 1 10.5128 -7.1635 0.2907 37 1 12.3386 -5.8868 1.2074 38 1 11.7262 -6.7149 2.6751 39 1 10.9719 -3.4208 0.8224 40 1 9.5313 -3.4704 1.8773 41 1 7.8808 -5.1667 1.6626 42 1 7.7608 -5.9578 0.0716 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327665741.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:17 Heat of formation + Delta-G solvation = -140.090029 kcal Electronic energy + Delta-G solvation = -22847.226388 eV Core-core repulsion = 19405.765757 eV Total energy + Delta-G solvation = -3441.460631 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.15663 -39.33468 -37.89270 -35.32476 -33.50137 -32.78728 -31.93392 -30.98524 -29.97660 -27.48192 -26.09209 -24.13602 -23.60382 -22.09645 -20.95841 -20.05175 -19.45417 -17.49189 -17.20776 -16.99998 -16.17908 -15.88689 -15.66591 -15.49844 -15.07146 -14.83416 -14.32142 -14.11404 -13.91160 -13.81413 -13.27149 -13.02220 -12.61518 -12.56741 -12.33955 -12.08705 -11.81686 -11.66374 -11.47765 -11.43800 -11.21020 -10.97608 -10.60468 -10.20407 -10.16881 -10.06922 -9.88520 -9.78567 -9.24559 -9.17487 -8.96789 -8.52287 -6.04553 -4.03472 3.04969 3.18881 3.31228 3.36525 3.43303 3.53902 3.62752 3.99838 4.34094 4.38186 4.49413 4.52828 4.60324 4.76165 4.83961 4.86566 5.00953 5.07086 5.22733 5.30881 5.32215 5.32307 5.35920 5.46285 5.48764 5.50976 5.56152 5.68934 5.82728 5.98944 6.05366 6.06986 6.42579 6.56179 6.66569 6.86540 7.33878 7.41170 7.70464 7.77631 8.47830 8.60192 8.98366 9.58423 11.08292 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.034596 B = 0.003157 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.139106 B = 8868.271462 C = 8885.188409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.526 4.526 8 H 0.072 0.928 9 C 0.002 3.998 10 C -0.123 4.123 11 C 0.511 3.489 12 O -0.540 6.540 13 N -0.737 5.737 14 C 0.141 3.859 15 H 0.088 0.912 16 C -0.167 4.167 17 C 0.060 3.940 18 O -0.366 6.366 19 C 0.092 3.908 20 C -0.142 4.142 21 C 0.046 3.954 22 O -0.373 6.373 23 C 0.021 3.979 24 C -0.145 4.145 25 H 0.263 0.737 26 H 0.023 0.977 27 H 0.019 0.981 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.399 0.601 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.096 0.904 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.652 -15.133 0.229 27.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.162 4.162 11 C 0.300 3.700 12 O -0.416 6.416 13 N -0.390 5.390 14 C 0.036 3.964 15 H 0.106 0.894 16 C -0.206 4.206 17 C -0.017 4.017 18 O -0.285 6.285 19 C 0.051 3.949 20 C -0.179 4.179 21 C -0.031 4.031 22 O -0.292 6.292 23 C -0.056 4.056 24 C -0.183 4.183 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.233 0.767 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.114 0.886 39 H 0.087 0.913 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 23.075 -14.278 0.354 27.137 hybrid contribution -0.187 0.618 -0.246 0.691 sum 22.888 -13.660 0.108 26.655 Atomic orbital electron populations 1.69911 1.06299 1.26991 1.51030 1.24977 0.94714 0.99246 0.94318 0.86792 0.80612 0.83385 0.78734 1.20249 1.21417 1.18548 1.21111 0.89280 0.94565 1.51387 0.90950 1.19362 0.96416 0.90179 0.97636 1.21677 0.87873 1.03325 1.03361 1.21584 0.91619 0.82785 0.74007 1.90648 1.70802 1.31435 1.48667 1.46212 1.05803 1.09394 1.77587 1.20915 0.81501 0.97952 0.96011 0.89367 1.22623 0.96127 1.04070 0.97822 1.22665 0.93747 0.86511 0.98783 1.87882 1.75733 1.39851 1.24993 1.22305 0.93429 0.95654 0.83508 1.23114 0.98464 0.95985 1.00364 1.23617 0.96253 0.85502 0.97713 1.88937 1.71662 1.31111 1.37483 1.23908 0.95729 0.95343 0.90621 1.22386 0.94665 0.98413 1.02840 0.92698 0.95843 0.96306 0.89609 0.89560 0.76671 0.90671 0.89804 0.92583 0.88133 0.88919 0.88724 0.91747 0.88627 0.91284 0.88810 0.89612 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.00 13.96 55.43 0.77 -27.22 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.57 27.47 -169.99 -4.67 17.90 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.26 -6.68 6.54 56.52 0.37 -6.31 16 7 C -0.53 -15.00 9.66 -34.44 -0.33 -15.33 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.74 16 9 C 0.00 0.05 3.33 -27.89 -0.09 -0.04 16 10 C -0.12 -2.32 5.64 -27.88 -0.16 -2.48 16 11 C 0.51 8.97 7.80 -10.98 -0.09 8.89 16 12 O -0.54 -11.56 15.64 5.56 0.09 -11.47 16 13 N -0.74 -9.29 5.08 -53.57 -0.27 -9.57 16 14 C 0.14 1.60 2.32 -67.69 -0.16 1.44 16 15 H 0.09 1.17 6.38 -51.93 -0.33 0.83 16 16 C -0.17 -1.79 5.70 -26.59 -0.15 -1.94 16 17 C 0.06 0.55 6.55 37.21 0.24 0.79 16 18 O -0.37 -3.59 10.18 -35.23 -0.36 -3.94 16 19 C 0.09 0.81 0.96 -89.87 -0.09 0.73 16 20 C -0.14 -1.01 6.43 -24.94 -0.16 -1.17 16 21 C 0.05 0.35 7.73 38.27 0.30 0.64 16 22 O -0.37 -4.02 11.53 -35.23 -0.41 -4.42 16 23 C 0.02 0.21 6.17 37.48 0.23 0.44 16 24 C -0.14 -1.26 4.07 -26.84 -0.11 -1.37 16 25 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 26 H 0.02 0.61 7.16 -51.93 -0.37 0.23 16 27 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 28 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.40 3.91 8.61 -40.82 -0.35 3.56 16 31 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.51 6.65 -51.93 -0.35 0.16 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.56 7.84 -51.93 -0.41 0.15 16 36 H 0.09 0.61 8.07 -51.93 -0.42 0.19 16 37 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.67 6.73 -51.93 -0.35 0.33 16 40 H 0.09 0.96 6.67 -51.93 -0.35 0.61 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 331.65 15.07 5.00 5.00 Total: -1.00 -34.38 331.65 -7.21 -41.59 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.70 Total: -0.39 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -0.66 Total: -7.46 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.50 Total: -36.79 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.68 Total: -19.84 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.67 Total: 17.90 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.38 -7.21 -41.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327665741.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.499 kcal (2) G-P(sol) polarization free energy of solvation -34.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds