Wall clock time and date at job start Tue Mar 31 2020 05:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00137 * 2 1 4 4 H 1.48500 * 109.46888 * 264.89933 * 3 2 1 5 5 H 1.48498 * 109.47126 * 24.90003 * 3 2 1 6 6 H 1.48500 * 109.47017 * 144.90566 * 3 2 1 7 7 C 1.37879 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00534 * 185.84987 * 7 2 1 9 9 C 1.50709 * 119.99898 * 5.84251 * 7 2 1 10 10 O 1.42901 * 110.63725 * 59.45397 * 9 7 2 11 11 C 1.55156 * 110.72145 * 296.11885 * 9 7 2 12 12 C 1.55126 * 101.48570 * 205.96589 * 11 9 7 13 13 N 1.47429 * 104.72124 * 37.29763 * 12 11 9 14 14 C 1.34769 * 125.64793 * 155.81721 * 13 12 11 15 15 O 1.21284 * 120.00206 * 179.68978 * 14 13 12 16 16 C 1.50700 * 120.00092 * 359.68670 * 14 13 12 17 17 C 1.53002 * 109.47066 * 179.97438 * 16 14 13 18 18 H 1.08999 * 109.52743 * 304.88251 * 17 16 14 19 19 C 1.53178 * 109.57198 * 184.71615 * 17 16 14 20 20 C 1.53182 * 109.03286 * 183.08626 * 19 17 16 21 21 C 1.53087 * 109.16497 * 56.98618 * 20 19 17 22 22 O 1.42905 * 109.41189 * 302.38867 * 21 20 19 23 23 C 1.42906 * 114.09803 * 61.15736 * 22 21 20 24 24 C 1.47019 * 108.70113 * 335.55018 * 13 12 11 25 25 H 0.97004 * 119.99708 * 359.97438 * 1 2 3 26 26 H 0.96703 * 114.00285 * 297.50951 * 10 9 7 27 27 H 1.08999 * 111.00108 * 324.21125 * 11 9 7 28 28 H 1.08998 * 111.00459 * 88.01886 * 11 9 7 29 29 H 1.08996 * 110.49986 * 278.45355 * 12 11 9 30 30 H 1.09003 * 110.34105 * 156.05444 * 12 11 9 31 31 H 1.09008 * 109.46872 * 60.00390 * 16 14 13 32 32 H 1.08995 * 109.47763 * 300.00150 * 16 14 13 33 33 H 1.09003 * 109.54434 * 63.22397 * 19 17 16 34 34 H 1.08997 * 109.54533 * 302.95511 * 19 17 16 35 35 H 1.08998 * 109.52405 * 297.07300 * 20 19 17 36 36 H 1.09002 * 109.51912 * 176.89191 * 20 19 17 37 37 H 1.09005 * 109.48048 * 62.36995 * 21 20 19 38 38 H 1.08996 * 109.48234 * 182.40898 * 21 20 19 39 39 H 1.09007 * 109.47807 * 58.82462 * 23 22 21 40 40 H 1.08994 * 109.47620 * 178.84160 * 23 22 21 41 41 H 1.09004 * 109.88563 * 120.70838 * 24 13 12 42 42 H 1.09001 * 109.88293 * 241.71570 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6045 1.9841 -1.3945 5 1 1.3969 2.6814 0.5895 6 1 3.4887 1.4736 0.8049 7 6 2.0045 -1.1941 -0.0005 8 1 3.0803 -1.1966 0.0948 9 6 1.2569 -2.4958 -0.1340 10 8 0.5214 -2.5309 -1.3587 11 6 0.3178 -2.7166 1.0812 12 6 0.2092 -4.2638 1.1106 13 7 1.5538 -4.7408 0.7389 14 6 2.0779 -5.9404 1.0591 15 8 3.1974 -6.2302 0.6936 16 6 1.2729 -6.9219 1.8713 17 6 2.0929 -8.1946 2.0924 18 1 2.4157 -8.5917 1.1301 19 6 1.2358 -9.2380 2.8155 20 6 2.0907 -10.4770 3.0992 21 6 3.3172 -10.0647 3.9173 22 8 4.0531 -9.0704 3.2018 23 6 3.3193 -7.8704 2.9495 24 6 2.2257 -3.6936 -0.0443 25 1 -0.4850 0.8401 0.0004 26 1 -0.1617 -1.8500 -1.4270 27 1 0.7687 -2.3356 1.9976 28 1 -0.6573 -2.2608 0.9094 29 1 -0.5291 -4.6084 0.3867 30 1 -0.0514 -4.6064 2.1120 31 1 0.3555 -7.1694 1.3371 32 1 1.0235 -6.4779 2.8350 33 1 0.3901 -9.5150 2.1860 34 1 0.8719 -8.8231 3.7555 35 1 2.4134 -10.9204 2.1572 36 1 1.5044 -11.2030 3.6624 37 1 2.9948 -9.6587 4.8762 38 1 3.9513 -10.9352 4.0857 39 1 2.9969 -7.4356 3.8957 40 1 3.9549 -7.1601 2.4209 41 1 3.1456 -3.3897 0.4553 42 1 2.4523 -4.0658 -1.0434 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328568793.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:40 Heat of formation + Delta-G solvation = -146.312677 kcal Electronic energy + Delta-G solvation = -23139.345159 eV Core-core repulsion = 19697.614693 eV Total energy + Delta-G solvation = -3441.730465 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.03343 -38.95332 -37.30306 -34.40784 -34.33881 -32.24846 -32.12458 -29.91534 -28.56881 -27.36288 -25.09655 -24.93102 -22.92248 -22.03348 -20.22534 -19.69571 -18.66096 -17.27765 -16.63250 -16.37738 -16.01128 -15.42157 -15.19055 -14.97979 -14.71304 -14.38775 -14.21371 -13.78121 -13.26012 -12.98073 -12.71555 -12.60402 -12.28511 -12.04759 -11.79233 -11.52413 -11.39972 -11.37270 -11.30483 -11.00087 -10.93492 -10.85869 -10.62920 -10.50278 -10.33558 -10.15067 -9.50067 -9.43400 -9.25727 -8.72735 -8.25385 -8.03329 -6.31502 -4.38504 3.02707 3.19674 3.26421 3.29485 3.48877 3.90390 4.25217 4.60691 4.62893 4.70226 4.82768 4.93753 5.02415 5.08135 5.30590 5.35706 5.43432 5.51364 5.52337 5.58170 5.67488 5.71161 5.77127 5.87870 5.88984 5.91901 5.97485 6.17845 6.27209 6.29342 6.42911 6.66997 6.87276 6.93999 7.20990 7.25668 7.31940 7.70452 7.99330 8.09394 8.59643 8.64407 9.26668 9.33733 10.75669 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.036896 B = 0.003516 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.704280 B = 7961.340155 C = 8252.023770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.246 3.754 10 O -0.584 6.584 11 C -0.134 4.134 12 C 0.093 3.907 13 N -0.608 5.608 14 C 0.518 3.482 15 O -0.552 6.552 16 C -0.130 4.130 17 C -0.106 4.106 18 H 0.087 0.913 19 C -0.118 4.118 20 C -0.155 4.155 21 C 0.057 3.943 22 O -0.380 6.380 23 C 0.061 3.939 24 C 0.122 3.878 25 H 0.268 0.732 26 H 0.381 0.619 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.047 0.953 38 H 0.089 0.911 39 H 0.043 0.957 40 H 0.115 0.885 41 H 0.072 0.928 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.214 -14.502 7.682 16.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.206 3.794 10 O -0.393 6.393 11 C -0.172 4.172 12 C -0.029 4.029 13 N -0.341 5.341 14 C 0.307 3.693 15 O -0.432 6.432 16 C -0.170 4.170 17 C -0.125 4.125 18 H 0.106 0.894 19 C -0.156 4.156 20 C -0.193 4.193 21 C -0.020 4.020 22 O -0.299 6.299 23 C -0.015 4.015 24 C 0.001 3.999 25 H 0.078 0.922 26 H 0.231 0.769 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.107 0.893 39 H 0.061 0.939 40 H 0.133 0.867 41 H 0.090 0.910 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.159 -15.127 7.333 16.851 hybrid contribution -0.507 1.511 0.240 1.612 sum -1.666 -13.616 7.573 15.669 Atomic orbital electron populations 1.69734 1.05938 1.27640 1.50114 1.24980 0.95027 0.99529 0.93425 0.86440 0.79765 0.82290 0.78547 1.20279 1.21130 1.19772 1.21508 0.94152 0.90418 1.51317 0.91765 1.19457 0.87491 0.90886 0.81552 1.86146 1.54003 1.58910 1.40229 1.23346 1.02796 0.89846 1.01239 1.22577 0.83734 0.98037 0.98589 1.48695 1.17223 1.15097 1.53072 1.20218 0.86966 0.81372 0.80765 1.90643 1.19957 1.76843 1.55707 1.21640 0.99547 0.94819 1.01007 1.21538 0.95685 0.94239 1.01002 0.89432 1.21666 0.98042 0.95265 1.00632 1.22177 0.97448 0.98079 1.01550 1.22564 0.93497 0.92060 0.93917 1.87982 1.39415 1.26154 1.76332 1.22902 0.94135 0.86797 0.97678 1.22064 0.96179 0.87050 0.94651 0.92238 0.76941 0.91378 0.89349 0.91927 0.92165 0.88861 0.89114 0.91348 0.91758 0.91006 0.91061 0.93494 0.89268 0.93920 0.86691 0.91008 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.56 10.72 55.43 0.59 -21.97 16 2 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 3 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.54 -13.86 8.20 -34.44 -0.28 -14.14 16 8 H 0.06 1.68 7.56 -52.49 -0.40 1.28 16 9 C 0.25 5.83 0.84 -89.93 -0.08 5.75 16 10 O -0.58 -14.37 13.07 -35.23 -0.46 -14.83 16 11 C -0.13 -2.79 5.49 -24.47 -0.13 -2.92 16 12 C 0.09 1.61 6.70 -2.41 -0.02 1.60 16 13 N -0.61 -11.65 3.32 -170.38 -0.57 -12.21 16 14 C 0.52 9.23 7.58 -10.99 -0.08 9.14 16 15 O -0.55 -11.48 14.30 5.55 0.08 -11.40 16 16 C -0.13 -1.67 4.19 -27.88 -0.12 -1.78 16 17 C -0.11 -1.32 2.03 -90.48 -0.18 -1.50 16 18 H 0.09 1.26 7.96 -51.93 -0.41 0.84 16 19 C -0.12 -1.13 5.32 -26.55 -0.14 -1.27 16 20 C -0.15 -1.38 6.14 -26.59 -0.16 -1.54 16 21 C 0.06 0.57 6.84 37.20 0.25 0.82 16 22 O -0.38 -5.31 10.77 -35.23 -0.38 -5.69 16 23 C 0.06 0.84 5.84 37.20 0.22 1.06 16 24 C 0.12 2.73 6.21 -3.07 -0.02 2.71 16 25 H 0.27 6.49 8.31 -40.82 -0.34 6.16 16 26 H 0.38 9.30 7.52 45.56 0.34 9.64 16 27 H 0.07 1.47 8.04 -51.93 -0.42 1.05 16 28 H 0.09 1.92 7.53 -51.93 -0.39 1.52 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.85 7.48 -51.93 -0.39 0.46 16 31 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 32 H 0.09 1.02 7.85 -51.93 -0.41 0.61 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.04 0.53 8.14 -51.92 -0.42 0.11 16 40 H 0.12 1.90 6.01 -51.93 -0.31 1.59 16 41 H 0.07 1.64 7.64 -51.93 -0.40 1.24 16 42 H 0.06 1.40 8.07 -51.93 -0.42 0.99 16 LS Contribution 330.96 15.07 4.99 4.99 Total: -1.00 -28.31 330.96 -7.74 -36.06 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -6.14 Total: 10.31 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -0.84 Total: -0.32 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.03 Total: -34.18 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.76 Total: -31.92 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.31 -7.74 -36.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328568793.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.257 kcal (2) G-P(sol) polarization free energy of solvation -28.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds