Wall clock time and date at job start Tue Mar 31 2020 05:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99630 * 2 1 4 4 H 1.48496 * 109.47292 * 240.00476 * 3 2 1 5 5 H 1.48502 * 109.47062 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47032 * 120.00020 * 3 2 1 7 7 C 1.37866 * 120.00337 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00447 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00194 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.91882 * 297.55468 * 9 7 2 11 11 C 1.55165 * 111.00281 * 61.45698 * 9 7 2 12 12 C 1.54327 * 102.94078 * 153.57654 * 11 9 7 13 13 N 1.47022 * 107.27336 * 337.80587 * 12 11 9 14 14 C 1.34777 * 125.64528 * 178.90269 * 13 12 11 15 15 O 1.21282 * 119.99501 * 180.02562 * 14 13 12 16 16 C 1.50696 * 120.00291 * 0.02824 * 14 13 12 17 17 C 1.52999 * 109.46999 * 179.97438 * 16 14 13 18 18 H 1.09005 * 109.52089 * 55.13086 * 17 16 14 19 19 C 1.53181 * 109.51856 * 175.31180 * 17 16 14 20 20 C 1.53182 * 109.03546 * 176.88639 * 19 17 16 21 21 C 1.53094 * 109.16550 * 303.02485 * 20 19 17 22 22 O 1.42901 * 109.41309 * 57.60417 * 21 20 19 23 23 C 1.42900 * 114.10267 * 298.84094 * 22 21 20 24 24 C 1.47425 * 108.70334 * 358.94217 * 13 12 11 25 25 H 0.97003 * 120.00526 * 359.97438 * 1 2 3 26 26 H 0.96702 * 113.99787 * 62.44258 * 10 9 7 27 27 H 1.08993 * 110.71917 * 35.21385 * 11 9 7 28 28 H 1.09002 * 110.71751 * 271.93956 * 11 9 7 29 29 H 1.08997 * 109.87800 * 97.22770 * 12 11 9 30 30 H 1.09000 * 109.87987 * 218.23010 * 12 11 9 31 31 H 1.08998 * 109.47080 * 299.99828 * 16 14 13 32 32 H 1.09005 * 109.47183 * 59.99784 * 16 14 13 33 33 H 1.08992 * 109.54993 * 296.75511 * 19 17 16 34 34 H 1.08996 * 109.54153 * 57.02382 * 19 17 16 35 35 H 1.08993 * 109.52695 * 183.11530 * 20 19 17 36 36 H 1.09001 * 109.51833 * 62.92531 * 20 19 17 37 37 H 1.09004 * 109.47729 * 297.62733 * 21 20 19 38 38 H 1.08992 * 109.49285 * 177.59493 * 21 20 19 39 39 H 1.09001 * 109.48396 * 301.17929 * 23 22 21 40 40 H 1.08995 * 109.49439 * 181.14613 * 23 22 21 41 41 H 1.08997 * 110.36855 * 142.96531 * 24 13 12 42 42 H 1.08999 * 110.36490 * 265.17846 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 8 0.4618 -2.6325 1.1832 11 6 0.3732 -2.6344 -1.2727 12 6 0.2581 -4.1629 -1.4522 13 7 1.3942 -4.7722 -0.7455 14 6 1.6410 -6.0936 -0.6475 15 8 2.6127 -6.4852 -0.0365 16 6 0.7096 -7.0843 -1.2971 17 6 1.2145 -8.5050 -1.0373 18 1 1.3306 -8.6598 0.0354 19 6 0.2082 -9.5159 -1.5957 20 6 0.7606 -10.9311 -1.3996 21 6 2.1279 -11.0358 -2.0802 22 8 3.0060 -10.0482 -1.5364 23 6 2.5643 -8.7034 -1.7320 24 6 2.2183 -3.6985 -0.1611 25 1 -0.4851 0.8400 0.0004 26 1 -0.2246 -1.9577 1.2763 27 1 0.8672 -2.1814 -2.1322 28 1 -0.6090 -2.1898 -1.1125 29 1 -0.6789 -4.5170 -1.0224 30 1 0.2986 -4.4158 -2.5116 31 1 -0.2904 -6.9714 -0.8783 32 1 0.6765 -6.9015 -2.3712 33 1 -0.7394 -9.4178 -1.0662 34 1 0.0546 -9.3285 -2.6584 35 1 0.0764 -11.6541 -1.8437 36 1 0.8674 -11.1360 -0.3343 37 1 2.0141 -10.8706 -3.1516 38 1 2.5451 -12.0278 -1.9076 39 1 2.4563 -8.5077 -2.7988 40 1 3.2956 -8.0151 -1.3084 41 1 2.6073 -4.0047 0.8100 42 1 3.0371 -3.4405 -0.8328 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328568794.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:44 Heat of formation + Delta-G solvation = -146.701505 kcal Electronic energy + Delta-G solvation = -23145.727208 eV Core-core repulsion = 19703.979882 eV Total energy + Delta-G solvation = -3441.747326 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.01718 -38.94329 -37.27058 -34.38414 -34.29906 -32.25483 -32.11429 -29.97256 -28.54659 -27.35814 -25.09427 -24.93554 -22.91688 -21.96360 -20.20319 -19.72946 -18.66621 -17.22046 -16.66181 -16.36711 -16.02330 -15.31870 -15.19584 -14.97795 -14.71318 -14.35589 -14.26088 -13.71488 -13.32331 -12.92547 -12.70871 -12.60624 -12.33788 -12.03099 -11.82549 -11.57906 -11.39303 -11.34976 -11.27519 -11.00021 -10.91430 -10.82908 -10.65453 -10.51943 -10.33401 -10.05818 -9.49517 -9.43176 -9.25589 -8.70632 -8.25896 -8.00751 -6.31204 -4.39374 3.05117 3.20138 3.25020 3.28256 3.51589 3.90524 4.24679 4.61996 4.64054 4.71448 4.83450 4.94558 5.03901 5.09373 5.31638 5.36351 5.45865 5.51562 5.53147 5.57644 5.67774 5.70255 5.78031 5.82865 5.89883 5.93305 5.99036 6.21983 6.29691 6.30949 6.41484 6.63708 6.86037 6.93805 7.20992 7.26184 7.30897 7.70331 7.99155 8.12697 8.61032 8.64902 9.27593 9.36388 10.76156 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.045282 B = 0.003421 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.193192 B = 8182.446834 C = 8442.168812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.248 3.752 10 O -0.582 6.582 11 C -0.136 4.136 12 C 0.098 3.902 13 N -0.607 5.607 14 C 0.520 3.480 15 O -0.552 6.552 16 C -0.130 4.130 17 C -0.106 4.106 18 H 0.088 0.912 19 C -0.118 4.118 20 C -0.155 4.155 21 C 0.057 3.943 22 O -0.380 6.380 23 C 0.062 3.938 24 C 0.119 3.881 25 H 0.268 0.732 26 H 0.380 0.620 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.046 0.954 38 H 0.089 0.911 39 H 0.042 0.958 40 H 0.115 0.885 41 H 0.070 0.930 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.012 -14.787 -6.711 16.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.730 3.270 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.207 3.793 10 O -0.391 6.391 11 C -0.175 4.175 12 C -0.025 4.025 13 N -0.339 5.339 14 C 0.308 3.692 15 O -0.432 6.432 16 C -0.170 4.170 17 C -0.125 4.125 18 H 0.106 0.894 19 C -0.156 4.156 20 C -0.193 4.193 21 C -0.020 4.020 22 O -0.299 6.299 23 C -0.015 4.015 24 C -0.002 4.002 25 H 0.078 0.922 26 H 0.230 0.770 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.107 0.893 39 H 0.060 0.940 40 H 0.133 0.867 41 H 0.088 0.912 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.084 -15.504 -6.206 16.830 hybrid contribution -0.475 1.605 -0.374 1.715 sum -2.558 -13.900 -6.580 15.590 Atomic orbital electron populations 1.69705 1.05964 1.27751 1.50052 1.24979 0.95022 0.99513 0.93425 0.86475 0.79551 0.82041 0.78911 1.20037 1.21127 1.19980 1.21408 0.93712 0.90196 1.52134 0.91771 1.19612 0.87023 0.90717 0.81918 1.86150 1.51502 1.56891 1.44540 1.23182 1.03186 0.89919 1.01217 1.22187 0.88593 0.96850 0.94839 1.48656 1.27385 1.05107 1.52754 1.20197 0.86282 0.81840 0.80855 1.90639 1.30464 1.78340 1.43744 1.21637 0.99860 0.93521 1.01992 1.21542 0.95678 0.92808 1.02460 0.89384 1.21664 0.98539 0.94200 1.01198 1.22178 0.97514 0.97345 1.02232 1.22562 0.90264 0.92688 0.96497 1.87978 1.46912 1.15180 1.79821 1.22894 0.96773 0.83457 0.98338 1.22368 0.93793 0.86143 0.97915 0.92174 0.77030 0.91347 0.89513 0.92441 0.92875 0.88805 0.89251 0.91317 0.91799 0.91063 0.90981 0.93525 0.89265 0.93990 0.86718 0.91151 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.63 10.76 55.43 0.60 -22.03 16 2 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 3 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -13.79 8.27 -34.45 -0.28 -14.08 16 8 H 0.06 1.65 7.79 -52.48 -0.41 1.24 16 9 C 0.25 5.87 0.87 -89.62 -0.08 5.79 16 10 O -0.58 -14.60 13.16 -35.23 -0.46 -15.06 16 11 C -0.14 -2.84 5.38 -24.89 -0.13 -2.97 16 12 C 0.10 1.70 6.49 -3.06 -0.02 1.68 16 13 N -0.61 -11.67 3.33 -170.52 -0.57 -12.24 16 14 C 0.52 9.38 7.58 -10.99 -0.08 9.29 16 15 O -0.55 -11.61 14.23 5.56 0.08 -11.53 16 16 C -0.13 -1.70 4.37 -27.89 -0.12 -1.82 16 17 C -0.11 -1.34 2.03 -90.48 -0.18 -1.53 16 18 H 0.09 1.30 7.96 -51.93 -0.41 0.89 16 19 C -0.12 -1.15 5.31 -26.54 -0.14 -1.29 16 20 C -0.15 -1.40 6.14 -26.59 -0.16 -1.57 16 21 C 0.06 0.57 6.84 37.21 0.25 0.82 16 22 O -0.38 -5.31 10.76 -35.23 -0.38 -5.69 16 23 C 0.06 0.85 5.84 37.21 0.22 1.07 16 24 C 0.12 2.64 6.08 -2.53 -0.02 2.62 16 25 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 26 H 0.38 9.46 7.57 45.56 0.34 9.81 16 27 H 0.07 1.44 8.03 -51.93 -0.42 1.03 16 28 H 0.09 1.89 7.55 -51.93 -0.39 1.50 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.12 1.88 6.01 -51.93 -0.31 1.57 16 41 H 0.07 1.67 8.04 -51.93 -0.42 1.25 16 42 H 0.07 1.53 8.03 -51.93 -0.42 1.11 16 LS Contribution 332.44 15.07 5.01 5.01 Total: -1.00 -28.43 332.44 -7.81 -36.24 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -6.22 Total: 10.58 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -0.85 Total: -0.21 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.03 Total: -34.27 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.76 Total: -32.28 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.43 -7.81 -36.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328568794.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.459 kcal (2) G-P(sol) polarization free energy of solvation -28.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds