Wall clock time and date at job start Tue Mar 31 2020 05:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 O 1.42895 * 110.88779 * 297.57315 * 9 7 2 11 11 C 1.55163 * 111.00616 * 61.45378 * 9 7 2 12 12 C 1.54324 * 102.94081 * 153.57118 * 11 9 7 13 13 N 1.47017 * 107.27471 * 337.81039 * 12 11 9 14 14 C 1.34780 * 125.64926 * 178.89388 * 13 12 11 15 15 O 1.21278 * 119.99759 * 180.02562 * 14 13 12 16 16 C 1.50698 * 119.99797 * 0.02562 * 14 13 12 17 17 C 1.53002 * 109.46973 * 180.02562 * 16 14 13 18 18 H 1.08996 * 109.52184 * 304.99886 * 17 16 14 19 19 C 1.53174 * 109.52326 * 184.87653 * 17 16 14 20 20 C 1.53181 * 109.03779 * 183.11395 * 19 17 16 21 21 C 1.53087 * 109.16291 * 56.97625 * 20 19 17 22 22 O 1.42901 * 109.41763 * 302.39445 * 21 20 19 23 23 C 1.42915 * 114.15429 * 61.12485 * 22 21 20 24 24 C 1.47420 * 108.70170 * 358.93715 * 13 12 11 25 25 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 26 26 H 0.96696 * 114.00094 * 59.30221 * 10 9 7 27 27 H 1.09000 * 110.71887 * 271.93749 * 11 9 7 28 28 H 1.08997 * 110.71740 * 35.20934 * 11 9 7 29 29 H 1.09004 * 109.87755 * 97.23007 * 12 11 9 30 30 H 1.09001 * 109.88074 * 218.23521 * 12 11 9 31 31 H 1.09000 * 109.47310 * 299.99779 * 16 14 13 32 32 H 1.08997 * 109.47022 * 60.00073 * 16 14 13 33 33 H 1.09008 * 109.54202 * 302.98133 * 19 17 16 34 34 H 1.09004 * 109.54871 * 63.24268 * 19 17 16 35 35 H 1.08994 * 109.52182 * 176.88316 * 20 19 17 36 36 H 1.08997 * 109.51504 * 297.07012 * 20 19 17 37 37 H 1.09001 * 109.48085 * 62.37505 * 21 20 19 38 38 H 1.08995 * 109.47926 * 182.40673 * 21 20 19 39 39 H 1.09004 * 109.53324 * 178.92894 * 23 22 21 40 40 H 1.09002 * 109.42541 * 58.89093 * 23 22 21 41 41 H 1.08998 * 110.37077 * 265.28931 * 24 13 12 42 42 H 1.09002 * 110.36613 * 142.96920 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 8 0.4617 -2.6305 1.1855 11 6 0.3731 -2.6355 -1.2703 12 6 0.2579 -4.1641 -1.4484 13 7 1.3940 -4.7729 -0.7413 14 6 1.6407 -6.0942 -0.6419 15 8 2.6124 -6.4853 -0.0307 16 6 0.7091 -7.0854 -1.2905 17 6 1.2132 -8.5060 -1.0283 18 1 2.2454 -8.5945 -1.3670 19 6 0.3378 -9.5080 -1.7872 20 6 0.8029 -10.9293 -1.4556 21 6 0.7432 -11.1368 0.0600 22 8 1.5542 -10.1537 0.7064 23 6 1.1391 -8.8065 0.4710 24 6 2.2181 -3.6987 -0.1579 25 1 -0.4850 -0.8401 -0.0004 26 1 -0.1926 -1.9281 1.3019 27 1 -0.6091 -2.1907 -1.1104 28 1 0.8671 -2.1832 -2.1302 29 1 -0.6791 -4.5178 -1.0183 30 1 0.2985 -4.4180 -2.5077 31 1 -0.2908 -6.9721 -0.8717 32 1 0.6759 -6.9037 -2.3647 33 1 -0.7025 -9.3850 -1.4856 34 1 0.4308 -9.3347 -2.8594 35 1 0.1504 -11.6503 -1.9479 36 1 1.8270 -11.0675 -1.8022 37 1 -0.2877 -11.0384 0.4000 38 1 1.1136 -12.1321 0.3054 39 1 1.7945 -8.1235 1.0115 40 1 0.1137 -8.6773 0.8174 41 1 3.0358 -3.4400 -0.8306 42 1 2.6072 -4.0041 0.8134 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328568795.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:47 Heat of formation + Delta-G solvation = -144.747111 kcal Electronic energy + Delta-G solvation = -23234.496925 eV Core-core repulsion = 19792.834348 eV Total energy + Delta-G solvation = -3441.662577 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.10877 -39.06718 -37.57195 -34.71302 -34.41577 -32.31646 -32.16200 -30.05743 -28.74063 -27.33068 -25.08428 -24.64541 -23.09629 -22.15454 -20.25383 -19.87105 -18.77155 -18.00140 -16.78680 -16.41032 -16.14747 -15.57617 -15.23977 -14.87636 -14.63173 -14.42010 -14.07591 -13.93503 -13.34560 -13.14430 -12.83176 -12.71330 -12.37560 -12.20119 -12.11032 -11.66850 -11.64134 -11.36172 -11.23806 -11.05268 -10.91657 -10.84912 -10.56953 -10.52513 -10.36415 -10.22152 -9.51932 -9.42200 -9.37283 -8.67939 -8.27816 -8.12658 -6.61734 -4.43913 2.95194 3.31091 3.35009 3.39957 3.51745 3.87420 4.32478 4.55111 4.59221 4.66702 4.79295 4.89974 4.98451 5.04929 5.27240 5.29396 5.32798 5.40347 5.47342 5.51961 5.55001 5.62691 5.64778 5.73413 5.74434 5.85074 5.87736 6.03300 6.19996 6.24150 6.25413 6.46382 6.63735 6.72090 6.87291 7.00119 7.18826 7.74367 7.98353 8.14771 8.51355 8.52185 8.90837 9.28329 10.69229 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.045506 B = 0.003443 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.157690 B = 8129.479108 C = 8280.081556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.031 3.969 3 Si 1.075 2.925 4 H -0.285 1.285 5 H -0.286 1.286 6 H -0.282 1.282 7 C -0.612 4.612 8 H 0.060 0.940 9 C 0.228 3.772 10 O -0.582 6.582 11 C -0.152 4.152 12 C 0.102 3.898 13 N -0.609 5.609 14 C 0.521 3.479 15 O -0.549 6.549 16 C -0.130 4.130 17 C -0.105 4.105 18 H 0.087 0.913 19 C -0.118 4.118 20 C -0.155 4.155 21 C 0.057 3.943 22 O -0.380 6.380 23 C 0.061 3.939 24 C 0.127 3.873 25 H 0.267 0.733 26 H 0.370 0.630 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.043 0.957 41 H 0.074 0.926 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.138 -15.393 -5.517 16.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.173 4.173 3 Si 0.902 3.098 4 H -0.212 1.212 5 H -0.212 1.212 6 H -0.208 1.208 7 C -0.650 4.650 8 H 0.079 0.921 9 C 0.188 3.812 10 O -0.390 6.390 11 C -0.191 4.191 12 C -0.021 4.021 13 N -0.341 5.341 14 C 0.309 3.691 15 O -0.429 6.429 16 C -0.170 4.170 17 C -0.125 4.125 18 H 0.106 0.894 19 C -0.156 4.156 20 C -0.192 4.192 21 C -0.020 4.020 22 O -0.299 6.299 23 C -0.015 4.015 24 C 0.006 3.994 25 H 0.082 0.918 26 H 0.219 0.781 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.108 0.892 39 H 0.133 0.867 40 H 0.061 0.939 41 H 0.092 0.908 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.284 -14.636 -4.996 15.633 hybrid contribution -0.588 -0.989 -0.507 1.257 sum -2.872 -15.625 -5.503 16.813 Atomic orbital electron populations 1.70976 1.06824 1.30467 1.46364 1.25949 0.96383 1.02962 0.92028 0.83441 0.74826 0.74522 0.76968 1.21198 1.21204 1.20759 1.22283 0.95113 0.91039 1.56599 0.92134 1.19913 0.87388 0.92608 0.81292 1.86296 1.53860 1.53420 1.45443 1.23440 1.02212 0.91397 1.02068 1.22086 0.88807 0.95959 0.95224 1.48643 1.27339 1.05203 1.52944 1.20218 0.86274 0.81733 0.80833 1.90647 1.30331 1.78277 1.43606 1.21645 0.99623 0.93561 1.02204 1.21538 1.01088 0.92619 0.97207 0.89428 1.21667 0.99312 0.94245 1.00377 1.22175 1.02516 0.97213 0.97338 1.22566 0.95098 0.92677 0.91703 1.87977 1.55015 1.15173 1.71709 1.22895 1.00292 0.83274 0.95029 1.22255 0.93530 0.85513 0.98132 0.91849 0.78096 0.90491 0.90505 0.92264 0.92496 0.89091 0.88879 0.91746 0.91360 0.91027 0.91001 0.93478 0.89220 0.86727 0.93891 0.90827 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.13 12.99 55.43 0.72 -23.41 16 2 C 0.03 0.82 5.27 -17.82 -0.09 0.72 16 3 Si 1.08 23.39 29.90 -169.99 -5.08 18.31 16 4 H -0.29 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.61 -15.96 8.27 -34.44 -0.28 -16.25 16 8 H 0.06 1.59 7.79 -52.49 -0.41 1.19 16 9 C 0.23 5.39 0.83 -89.62 -0.07 5.32 16 10 O -0.58 -14.39 13.17 -35.23 -0.46 -14.85 16 11 C -0.15 -3.12 5.32 -24.89 -0.13 -3.26 16 12 C 0.10 1.74 6.49 -3.07 -0.02 1.72 16 13 N -0.61 -11.58 3.33 -170.52 -0.57 -12.15 16 14 C 0.52 9.28 7.58 -10.98 -0.08 9.20 16 15 O -0.55 -11.46 14.23 5.56 0.08 -11.38 16 16 C -0.13 -1.67 4.37 -27.88 -0.12 -1.79 16 17 C -0.11 -1.32 2.03 -90.48 -0.18 -1.50 16 18 H 0.09 1.25 7.96 -51.93 -0.41 0.83 16 19 C -0.12 -1.12 5.31 -26.55 -0.14 -1.26 16 20 C -0.15 -1.38 6.14 -26.59 -0.16 -1.54 16 21 C 0.06 0.57 6.84 37.20 0.25 0.83 16 22 O -0.38 -5.37 10.76 -35.23 -0.38 -5.75 16 23 C 0.06 0.86 5.85 37.20 0.22 1.08 16 24 C 0.13 2.81 6.08 -2.53 -0.02 2.80 16 25 H 0.27 6.83 3.73 -40.82 -0.15 6.68 16 26 H 0.37 8.96 6.64 45.56 0.30 9.27 16 27 H 0.08 1.61 6.45 -51.93 -0.34 1.27 16 28 H 0.08 1.61 8.03 -51.93 -0.42 1.20 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.11 1.94 6.02 -51.93 -0.31 1.63 16 40 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 1.60 8.03 -51.93 -0.42 1.18 16 42 H 0.07 1.72 8.04 -51.93 -0.42 1.30 16 LS Contribution 328.33 15.07 4.95 4.95 Total: -1.00 -29.86 328.33 -7.60 -37.46 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -6.02 Total: 10.76 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -0.84 Total: -3.94 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.15 Total: -35.56 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -0.76 Total: -31.97 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.08 Total: 18.31 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.86 -7.60 -37.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328568795.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.286 kcal (2) G-P(sol) polarization free energy of solvation -29.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds