Wall clock time and date at job start Tue Mar 31 2020 05:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99974 * 2 1 4 4 H 1.48503 * 109.47571 * 267.32032 * 3 2 1 5 5 H 1.48496 * 109.47423 * 27.31846 * 3 2 1 6 6 H 1.48500 * 109.47357 * 147.31985 * 3 2 1 7 7 C 1.37879 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99712 * 353.52627 * 7 2 1 9 9 C 1.50694 * 119.99782 * 173.53120 * 7 2 1 10 10 O 1.42899 * 110.89150 * 328.69945 * 9 7 2 11 11 C 1.55163 * 110.99923 * 204.82336 * 9 7 2 12 12 C 1.54331 * 102.93909 * 206.38538 * 11 9 7 13 13 N 1.47021 * 107.27315 * 22.19013 * 12 11 9 14 14 C 1.34772 * 125.65079 * 181.02165 * 13 12 11 15 15 O 1.21278 * 120.00378 * 180.02562 * 14 13 12 16 16 C 1.50708 * 119.99743 * 0.02788 * 14 13 12 17 17 C 1.53001 * 109.46716 * 180.02562 * 16 14 13 18 18 H 1.08996 * 109.52633 * 55.12985 * 17 16 14 19 19 C 1.53190 * 109.51896 * 175.25007 * 17 16 14 20 20 C 1.53186 * 109.02911 * 176.82137 * 19 17 16 21 21 C 1.53096 * 109.21205 * 303.11265 * 20 19 17 22 22 O 1.42897 * 109.41550 * 57.57889 * 21 20 19 23 23 C 1.42907 * 114.10098 * 298.83864 * 22 21 20 24 24 C 1.47431 * 108.70198 * 1.29149 * 13 12 11 25 25 H 0.96999 * 119.99839 * 0.02562 * 1 2 3 26 26 H 0.96705 * 113.99516 * 292.33337 * 10 9 7 27 27 H 1.09000 * 110.72336 * 88.02314 * 11 9 7 28 28 H 1.08996 * 110.87353 * 324.81524 * 11 9 7 29 29 H 1.09003 * 109.87992 * 262.77600 * 12 11 9 30 30 H 1.08997 * 110.00792 * 141.68326 * 12 11 9 31 31 H 1.08998 * 109.46755 * 59.99749 * 16 14 13 32 32 H 1.09003 * 109.46760 * 300.00057 * 16 14 13 33 33 H 1.09005 * 109.49430 * 56.99257 * 19 17 16 34 34 H 1.08998 * 109.59812 * 296.71529 * 19 17 16 35 35 H 1.08999 * 109.52092 * 183.17757 * 20 19 17 36 36 H 1.08991 * 109.51813 * 63.05108 * 20 19 17 37 37 H 1.08997 * 109.47640 * 177.55775 * 21 20 19 38 38 H 1.08995 * 109.47929 * 297.58314 * 21 20 19 39 39 H 1.08998 * 109.48499 * 181.14025 * 23 22 21 40 40 H 1.08999 * 109.47620 * 301.17561 * 23 22 21 41 41 H 1.08998 * 110.36769 * 94.47975 * 24 13 12 42 42 H 1.09005 * 110.36226 * 216.80680 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5533 2.0138 -1.3985 5 1 1.4194 2.6684 0.6425 6 1 3.5172 1.4572 0.7560 7 6 2.0045 -1.1941 -0.0005 8 1 1.4697 -2.1264 0.1045 9 6 3.5043 -1.1981 -0.1476 10 8 3.9406 -0.0993 -0.9502 11 6 4.0020 -2.5462 -0.7326 12 6 5.4433 -2.6473 -0.1902 13 7 5.5225 -1.7894 1.0011 14 6 6.6227 -1.5897 1.7536 15 8 6.5723 -0.8577 2.7192 16 6 7.9156 -2.2761 1.3949 17 6 8.9981 -1.8827 2.4021 18 1 8.6551 -2.1073 3.4119 19 6 10.2794 -2.6699 2.1098 20 6 11.3785 -2.2103 3.0729 21 6 11.5771 -0.6994 2.9265 22 8 10.3404 -0.0307 3.1822 23 6 9.2887 -0.3844 2.2816 24 6 4.1975 -1.1889 1.2402 25 1 -0.4850 0.8401 -0.0004 26 1 3.6752 -0.1603 -1.8781 27 1 4.0011 -2.5176 -1.8223 28 1 3.3944 -3.3751 -0.3696 29 1 6.1486 -2.2994 -0.9450 30 1 5.6686 -3.6789 0.0801 31 1 8.2224 -1.9727 0.3940 32 1 7.7723 -3.3563 1.4193 33 1 10.5938 -2.4847 1.0827 34 1 10.0941 -3.7348 2.2496 35 1 12.3096 -2.7248 2.8351 36 1 11.0856 -2.4418 4.0968 37 1 12.3279 -0.3607 3.6405 38 1 11.9104 -0.4730 1.9137 39 1 8.3909 0.1811 2.5310 40 1 9.5919 -0.1538 1.2604 41 1 3.6321 -1.7889 1.9532 42 1 4.3042 -0.1668 1.6036 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328568796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:50 Heat of formation + Delta-G solvation = -140.481039 kcal Electronic energy + Delta-G solvation = -23361.372038 eV Core-core repulsion = 19919.894451 eV Total energy + Delta-G solvation = -3441.477587 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.12209 -39.09343 -37.59952 -34.79833 -34.42716 -32.40674 -32.16542 -30.44567 -28.72819 -27.53937 -25.12306 -24.89495 -23.05705 -22.23090 -20.25081 -19.85319 -18.80992 -17.55187 -16.83462 -16.42310 -16.11413 -15.53504 -15.32595 -14.98483 -14.88376 -14.57294 -14.26967 -14.09714 -13.37022 -13.17106 -12.77656 -12.69296 -12.52926 -12.26508 -12.14059 -11.87440 -11.69600 -11.56501 -11.36212 -11.06475 -10.96955 -10.85667 -10.61724 -10.37407 -10.32862 -10.23737 -9.53333 -9.42074 -9.24405 -8.62701 -8.55474 -8.12505 -6.22974 -4.36150 2.95582 3.37450 3.45520 3.55446 3.72919 3.87078 4.48728 4.53210 4.57943 4.65355 4.78063 4.87934 4.99834 5.06101 5.09316 5.19625 5.27928 5.31126 5.40155 5.44952 5.50743 5.51697 5.62903 5.68082 5.72462 5.83903 5.86423 5.99419 6.07736 6.22458 6.24288 6.47987 6.53099 6.62393 6.69696 6.95437 7.18238 7.42765 7.98460 8.08897 8.52518 8.58680 8.77646 9.38813 10.85559 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.030941 B = 0.004145 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.728415 B = 6753.612764 C = 7243.531651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.075 3.925 3 Si 0.947 3.053 4 H -0.292 1.292 5 H -0.324 1.324 6 H -0.268 1.268 7 C -0.554 4.554 8 H 0.082 0.918 9 C 0.219 3.781 10 O -0.558 6.558 11 C -0.149 4.149 12 C 0.104 3.896 13 N -0.612 5.612 14 C 0.519 3.481 15 O -0.547 6.547 16 C -0.130 4.130 17 C -0.106 4.106 18 H 0.088 0.912 19 C -0.118 4.118 20 C -0.155 4.155 21 C 0.056 3.944 22 O -0.380 6.380 23 C 0.061 3.939 24 C 0.113 3.887 25 H 0.267 0.733 26 H 0.370 0.630 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.047 0.953 39 H 0.115 0.885 40 H 0.042 0.958 41 H 0.079 0.921 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.960 -7.021 -0.579 21.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.130 4.130 3 Si 0.783 3.217 4 H -0.220 1.220 5 H -0.256 1.256 6 H -0.194 1.194 7 C -0.591 4.591 8 H 0.100 0.900 9 C 0.179 3.821 10 O -0.366 6.366 11 C -0.187 4.187 12 C -0.020 4.020 13 N -0.345 5.345 14 C 0.308 3.692 15 O -0.426 6.426 16 C -0.170 4.170 17 C -0.125 4.125 18 H 0.106 0.894 19 C -0.155 4.155 20 C -0.193 4.193 21 C -0.021 4.021 22 O -0.298 6.298 23 C -0.015 4.015 24 C -0.009 4.009 25 H 0.077 0.923 26 H 0.218 0.782 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.133 0.867 40 H 0.061 0.939 41 H 0.097 0.903 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 20.050 -6.228 0.692 21.006 hybrid contribution 0.077 0.215 -0.911 0.939 sum 20.127 -6.013 -0.219 21.007 Atomic orbital electron populations 1.69959 1.06856 1.27940 1.47281 1.25152 0.94912 1.00597 0.92360 0.85700 0.78076 0.80012 0.77944 1.21983 1.25570 1.19439 1.21145 0.88298 0.95406 1.54252 0.90002 1.20262 0.93486 0.81697 0.86685 1.86156 1.79943 1.46696 1.23785 1.23279 0.93363 1.01492 1.00603 1.22023 0.99315 0.93395 0.87231 1.48743 1.10930 1.46875 1.27982 1.20240 0.84366 0.82054 0.82587 1.90661 1.84760 1.38899 1.28239 1.21654 0.92838 1.01706 1.00833 1.21546 0.93865 0.96635 1.00467 0.89395 1.21665 0.94595 0.99926 0.99364 1.22176 0.99188 0.97074 1.00821 1.22565 0.87136 0.91675 1.00683 1.87988 1.19870 1.65859 1.56103 1.22897 0.91241 0.94807 0.92573 1.22974 0.80173 0.98949 0.98786 0.92318 0.78187 0.90715 0.90158 0.92145 0.92373 0.89158 0.88901 0.91792 0.91359 0.91049 0.90993 0.89229 0.93500 0.86709 0.93929 0.90313 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 2 C 0.08 2.08 5.46 -17.82 -0.10 1.99 16 3 Si 0.95 23.78 24.91 -169.99 -4.24 19.54 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.32 -8.39 7.11 56.52 0.40 -7.99 16 6 H -0.27 -6.92 5.42 56.52 0.31 -6.61 16 7 C -0.55 -14.36 8.89 -34.44 -0.31 -14.66 16 8 H 0.08 2.28 8.00 -52.49 -0.42 1.86 16 9 C 0.22 4.69 0.70 -89.50 -0.06 4.63 16 10 O -0.56 -11.83 8.52 -35.23 -0.30 -12.13 16 11 C -0.15 -2.49 6.11 -24.89 -0.15 -2.64 16 12 C 0.10 1.50 6.48 -3.06 -0.02 1.48 16 13 N -0.61 -11.00 3.32 -170.37 -0.57 -11.57 16 14 C 0.52 8.98 7.58 -10.98 -0.08 8.89 16 15 O -0.55 -11.42 14.22 5.56 0.08 -11.34 16 16 C -0.13 -1.58 4.37 -27.88 -0.12 -1.70 16 17 C -0.11 -1.29 2.03 -90.47 -0.18 -1.47 16 18 H 0.09 1.23 7.96 -51.93 -0.41 0.82 16 19 C -0.12 -1.07 5.32 -26.54 -0.14 -1.21 16 20 C -0.15 -1.34 6.13 -26.59 -0.16 -1.51 16 21 C 0.06 0.56 6.84 37.21 0.25 0.81 16 22 O -0.38 -5.33 10.77 -35.23 -0.38 -5.71 16 23 C 0.06 0.85 5.84 37.21 0.22 1.07 16 24 C 0.11 2.43 5.90 -2.41 -0.01 2.42 16 25 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.37 6.67 8.99 45.56 0.41 7.08 16 27 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 28 H 0.08 1.35 7.99 -51.93 -0.41 0.94 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.12 1.94 6.01 -51.93 -0.31 1.63 16 40 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 1.72 8.04 -51.93 -0.42 1.30 16 42 H 0.08 1.88 6.50 -51.93 -0.34 1.54 16 LS Contribution 326.48 15.07 4.92 4.92 Total: -1.00 -32.37 326.48 -6.79 -39.16 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.21 Total: 4.31 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -0.87 Total: -1.90 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.21 Total: -36.85 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.60 Total: -29.18 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -4.24 Total: 19.54 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.37 -6.79 -39.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328568796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.320 kcal (2) G-P(sol) polarization free energy of solvation -32.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds