Wall clock time and date at job start Tue Mar 31 2020 05:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99820 * 2 1 4 4 H 1.48503 * 109.47305 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47166 * 119.99674 * 3 2 1 6 6 H 1.48499 * 109.46987 * 239.99642 * 3 2 1 7 7 C 1.37870 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00066 * 193.83475 * 7 2 1 9 9 C 1.50700 * 120.00275 * 13.83955 * 7 2 1 10 10 O 1.42897 * 112.94783 * 53.31840 * 9 7 2 11 11 C 1.53951 * 113.73930 * 281.58305 * 9 7 2 12 12 N 1.47585 * 86.11814 * 222.04471 * 11 9 7 13 13 C 1.34771 * 134.49296 * 204.63537 * 12 11 9 14 14 O 1.21514 * 120.00228 * 180.02562 * 13 12 11 15 15 O 1.34643 * 119.99877 * 0.02562 * 13 12 11 16 16 C 1.45198 * 116.99710 * 179.97438 * 15 13 12 17 17 C 1.52998 * 109.47187 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.47084 * 295.00405 * 17 16 15 19 19 C 1.52998 * 109.47084 * 179.97438 * 18 17 16 20 20 C 1.52995 * 109.47331 * 59.99737 * 19 18 17 21 21 C 1.53001 * 109.47251 * 300.00161 * 20 19 18 22 22 C 1.52992 * 109.46832 * 59.99852 * 21 20 19 23 23 C 1.47584 * 91.01048 * 24.64339 * 12 11 9 24 24 H 0.97007 * 119.99483 * 185.87567 * 1 2 3 25 25 H 0.96698 * 114.00098 * 303.04147 * 10 9 7 26 26 H 1.08994 * 113.76900 * 336.35179 * 11 9 7 27 27 H 1.09010 * 113.76488 * 107.74641 * 11 9 7 28 28 H 1.08997 * 109.47851 * 300.00212 * 16 15 13 29 29 H 1.09001 * 109.46919 * 60.00025 * 16 15 13 30 30 H 1.09002 * 109.46887 * 55.00066 * 17 16 15 31 31 H 1.09002 * 109.46981 * 299.99603 * 18 17 16 32 32 H 1.09001 * 109.47078 * 59.99848 * 18 17 16 33 33 H 1.09002 * 109.46887 * 299.99661 * 19 18 17 34 34 H 1.09000 * 109.47002 * 180.02562 * 19 18 17 35 35 H 1.09001 * 109.47390 * 180.02562 * 20 19 18 36 36 H 1.09002 * 109.47197 * 60.00113 * 20 19 18 37 37 H 1.08997 * 109.46597 * 299.99799 * 21 20 19 38 38 H 1.09001 * 109.47078 * 179.97438 * 21 20 19 39 39 H 1.09008 * 109.46936 * 180.02562 * 22 21 20 40 40 H 1.08997 * 109.47573 * 60.00544 * 22 21 20 41 41 H 1.09003 * 113.76727 * 221.05145 * 23 12 11 42 42 H 1.09000 * 113.86995 * 89.67487 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0610 -1.2075 0.2242 9 6 1.2839 -2.4803 -0.3111 10 8 0.5652 -2.4315 -1.5452 11 6 0.4600 -3.0303 0.8674 12 7 0.9831 -4.3560 0.4838 13 6 0.5567 -5.6237 0.6495 14 8 1.2146 -6.5479 0.2141 15 8 -0.5984 -5.8661 1.2975 16 6 -0.9961 -7.2555 1.4383 17 6 -2.3230 -7.3319 2.1961 18 6 -2.1247 -6.8207 3.6245 19 6 -3.4518 -6.8965 4.3822 20 6 -3.9341 -8.3479 4.4222 21 6 -4.1324 -8.8590 2.9938 22 6 -2.8053 -8.7833 2.2363 23 6 2.1608 -3.7358 -0.1538 24 1 -0.4850 -0.8357 0.0860 25 1 -0.0835 -1.7161 -1.5945 26 1 0.8051 -2.6872 1.8427 27 1 -0.6172 -2.9282 0.7358 28 1 -1.1150 -7.7014 0.4509 29 1 -0.2301 -7.7983 1.9921 30 1 -3.0665 -6.7162 1.6899 31 1 -1.3812 -7.4364 4.1308 32 1 -1.7816 -5.7865 3.5960 33 1 -4.1949 -6.2805 3.8757 34 1 -3.3106 -6.5319 5.3996 35 1 -4.8797 -8.4018 4.9616 36 1 -3.1909 -8.9638 4.9286 37 1 -4.8755 -8.2431 2.4875 38 1 -4.4755 -9.8932 3.0224 39 1 -2.9467 -9.1470 1.2185 40 1 -2.0622 -9.3992 2.7426 41 1 2.4415 -4.1971 -1.1007 42 1 3.0066 -3.5995 0.5201 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328747627.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:17 Heat of formation + Delta-G solvation = -123.618197 kcal Electronic energy + Delta-G solvation = -22806.243944 eV Core-core repulsion = 19365.497585 eV Total energy + Delta-G solvation = -3440.746359 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.14310 -39.02777 -38.18290 -35.76015 -34.32980 -32.40029 -32.13655 -30.92371 -28.74722 -26.05728 -25.55657 -24.72850 -22.80782 -21.54409 -20.82586 -19.95634 -19.23307 -18.23761 -17.07996 -16.55765 -16.22373 -15.56792 -14.91703 -14.79975 -14.38198 -14.30556 -14.15329 -13.90526 -13.68138 -13.17101 -12.78579 -12.52848 -12.38485 -12.31794 -12.12953 -11.80374 -11.61798 -11.32097 -11.19933 -11.13621 -10.93815 -10.65208 -10.58441 -10.40274 -10.36100 -10.22737 -10.11001 -10.09374 -9.36235 -8.86122 -8.49425 -7.99102 -6.70074 -4.49875 2.47411 3.30583 3.33558 3.35645 3.52620 4.17428 4.32419 4.46831 4.54151 4.64095 4.80805 4.92052 5.06520 5.14534 5.24893 5.26907 5.31285 5.33256 5.43467 5.50161 5.56382 5.66806 5.70704 5.83245 5.92464 5.94429 5.96794 5.98207 6.08153 6.13216 6.17620 6.26191 6.31971 6.37904 6.38718 6.72113 6.84052 7.62296 8.07224 8.29823 8.43121 8.76702 8.82212 9.20756 10.61611 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.026212 B = 0.003540 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.974458 B = 7906.611399 C = 8545.664978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.037 3.963 3 Si 1.068 2.932 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.618 4.618 8 H 0.067 0.933 9 C 0.216 3.784 10 O -0.565 6.565 11 C 0.078 3.922 12 N -0.621 5.621 13 C 0.664 3.336 14 O -0.593 6.593 15 O -0.367 6.367 16 C 0.092 3.908 17 C -0.086 4.086 18 C -0.114 4.114 19 C -0.120 4.120 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.112 4.112 23 C 0.147 3.853 24 H 0.269 0.731 25 H 0.376 0.624 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.902 -12.140 7.465 15.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.169 4.169 3 Si 0.894 3.106 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.656 4.656 8 H 0.085 0.915 9 C 0.175 3.825 10 O -0.373 6.373 11 C -0.045 4.045 12 N -0.362 5.362 13 C 0.419 3.581 14 O -0.485 6.485 15 O -0.281 6.281 16 C 0.016 3.984 17 C -0.105 4.105 18 C -0.152 4.152 19 C -0.157 4.157 20 C -0.158 4.158 21 C -0.154 4.154 22 C -0.149 4.149 23 C 0.026 3.974 24 H 0.081 0.919 25 H 0.225 0.775 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.655 -11.569 7.171 15.152 hybrid contribution -0.124 -1.428 0.299 1.464 sum -6.779 -12.997 7.470 16.453 Atomic orbital electron populations 1.70939 1.06999 1.30799 1.44490 1.25996 0.96205 1.03040 0.91626 0.83566 0.75137 0.74893 0.76965 1.20555 1.21089 1.20986 1.22191 0.97851 0.91819 1.53723 0.91512 1.20143 0.88410 0.92711 0.81232 1.86245 1.57063 1.56395 1.37573 1.24486 1.00095 0.77903 1.02000 1.48975 1.26805 1.01960 1.58459 1.17669 0.79740 0.82995 0.77646 1.90915 1.58705 1.42960 1.55936 1.86242 1.39222 1.30799 1.71852 1.22925 0.96023 0.78879 1.00529 1.21217 0.95583 0.97343 0.96365 1.21572 0.97293 1.02109 0.94218 1.21539 0.97381 0.96508 1.00293 1.21558 1.00940 0.96621 0.96687 1.21502 0.97093 1.00996 0.95845 1.21498 0.97504 0.95165 1.00777 1.23363 0.88379 0.89253 0.96374 0.91926 0.77482 0.89482 0.91428 0.91560 0.91620 0.89990 0.92075 0.91007 0.91869 0.91974 0.92165 0.92060 0.91808 0.91892 0.91597 0.91604 0.90661 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.55 12.80 55.43 0.71 -22.84 16 2 C 0.04 0.95 5.26 -17.82 -0.09 0.85 16 3 Si 1.07 22.58 29.93 -169.99 -5.09 17.49 16 4 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.62 -15.57 8.56 -34.44 -0.29 -15.86 16 8 H 0.07 1.65 7.85 -52.49 -0.41 1.24 16 9 C 0.22 5.13 1.08 -90.84 -0.10 5.04 16 10 O -0.57 -14.02 13.45 -35.23 -0.47 -14.49 16 11 C 0.08 1.71 7.31 -2.97 -0.02 1.69 16 12 N -0.62 -13.70 3.61 -184.09 -0.66 -14.36 16 13 C 0.66 14.52 8.92 54.05 0.48 15.00 16 14 O -0.59 -14.05 16.86 -19.28 -0.33 -14.37 16 15 O -0.37 -6.91 9.75 -40.33 -0.39 -7.31 16 16 C 0.09 1.35 4.85 37.16 0.18 1.53 16 17 C -0.09 -1.00 2.43 -90.62 -0.22 -1.22 16 18 C -0.11 -1.29 5.10 -26.73 -0.14 -1.42 16 19 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 20 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 21 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 22 C -0.11 -1.03 5.20 -26.74 -0.14 -1.17 16 23 C 0.15 3.20 8.23 -2.97 -0.02 3.18 16 24 H 0.27 6.92 5.52 -40.82 -0.23 6.69 16 25 H 0.38 9.09 6.95 45.56 0.32 9.40 16 26 H 0.09 1.87 8.09 -51.93 -0.42 1.45 16 27 H 0.07 1.47 7.80 -51.92 -0.41 1.07 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.94 7.82 -51.93 -0.41 0.53 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 42 H 0.09 1.84 8.09 -51.93 -0.42 1.42 16 LS Contribution 340.41 15.07 5.13 5.13 Total: -1.00 -29.13 340.41 -8.21 -37.34 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -6.26 Total: 9.31 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -0.84 Total: 4.10 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.05 Total: -37.20 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: -1.19 Total: -36.17 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.09 Total: 17.49 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.13 -8.21 -37.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328747627.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.276 kcal (2) G-P(sol) polarization free energy of solvation -29.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds