Wall clock time and date at job start Tue Mar 31 2020 05:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99682 * 2 1 4 4 H 1.48499 * 109.47164 * 240.00099 * 3 2 1 5 5 H 1.48498 * 109.47343 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47149 * 120.00218 * 3 2 1 7 7 C 1.37879 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00012 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99969 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.50248 * 300.07050 * 9 7 2 11 11 C 1.53039 * 109.49817 * 180.02562 * 9 7 2 12 12 C 1.53046 * 109.52798 * 178.65877 * 11 9 7 13 13 C 1.53159 * 109.32667 * 61.37318 * 12 11 9 14 14 N 1.46928 * 108.76987 * 305.35456 * 13 12 11 15 15 C 1.34771 * 120.63178 * 233.63011 * 14 13 12 16 16 O 1.21284 * 119.99847 * 179.97438 * 15 14 13 17 17 C 1.50699 * 120.00350 * 359.97438 * 15 14 13 18 18 O 1.42897 * 109.47739 * 180.02562 * 17 15 14 19 19 C 1.42895 * 114.00343 * 180.02562 * 18 17 15 20 20 H 1.09004 * 110.45962 * 27.39154 * 19 18 17 21 21 C 1.54510 * 110.51169 * 149.99542 * 19 18 17 22 22 C 1.54483 * 104.05925 * 118.64619 * 21 19 18 23 23 O 1.44426 * 104.80631 * 23.97629 * 22 21 19 24 24 C 1.44420 * 105.27442 * 319.49098 * 23 22 21 25 25 C 1.46931 * 118.73792 * 53.61250 * 14 13 12 26 26 H 0.97000 * 120.00339 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46050 * 298.67463 * 11 9 7 28 28 H 1.09004 * 109.46034 * 58.64679 * 11 9 7 29 29 H 1.08996 * 109.49379 * 181.30938 * 12 11 9 30 30 H 1.08994 * 109.49581 * 301.40708 * 12 11 9 31 31 H 1.08999 * 109.58991 * 185.56748 * 13 12 11 32 32 H 1.08998 * 109.59395 * 65.13869 * 13 12 11 33 33 H 1.09005 * 109.47033 * 300.00164 * 17 15 14 34 34 H 1.09001 * 109.47321 * 59.99201 * 17 15 14 35 35 H 1.08998 * 110.50964 * 237.28755 * 21 19 18 36 36 H 1.08996 * 110.50954 * 359.86448 * 21 19 18 37 37 H 1.09001 * 110.37365 * 142.81325 * 22 21 19 38 38 H 1.09002 * 110.36716 * 265.03269 * 22 21 19 39 39 H 1.09004 * 110.37276 * 281.67531 * 24 23 22 40 40 H 1.09002 * 110.37186 * 159.34141 * 24 23 22 41 41 H 1.08998 * 109.58425 * 186.61021 * 25 14 13 42 42 H 1.08999 * 109.58795 * 66.17471 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6238 -2.5571 0.8888 11 6 2.2452 -3.6628 -0.0005 12 6 1.4810 -4.9884 0.0332 13 6 0.6055 -5.1007 -1.2184 14 7 -0.2532 -3.9115 -1.3031 15 6 -1.5896 -4.0367 -1.4242 16 8 -2.2876 -3.0472 -1.4926 17 6 -2.2167 -5.4061 -1.4745 18 8 -3.6338 -5.2767 -1.6048 19 6 -4.3287 -6.5240 -1.6613 20 1 -3.7687 -7.2963 -1.1340 21 6 -5.7470 -6.3812 -1.0651 22 6 -6.6856 -6.7264 -2.2425 23 8 -5.8874 -7.5482 -3.1220 24 6 -4.5782 -6.9386 -3.1284 25 6 0.3728 -2.5831 -1.2529 26 1 -0.4851 0.8400 0.0004 27 1 2.8560 -3.6186 -0.9022 28 1 2.8877 -3.5916 0.8772 29 1 2.1896 -5.8162 0.0567 30 1 0.8512 -5.0226 0.9221 31 1 -0.0142 -5.9949 -1.1519 32 1 1.2389 -5.1578 -2.1036 33 1 -1.8223 -5.9551 -2.3295 34 1 -1.9836 -5.9464 -0.5570 35 1 -5.8889 -7.0846 -0.2446 36 1 -5.9172 -5.3597 -0.7250 37 1 -7.5525 -7.2828 -1.8862 38 1 -7.0029 -5.8175 -2.7538 39 1 -4.5707 -6.0624 -3.7768 40 1 -3.8262 -7.6580 -3.4525 41 1 -0.4006 -1.8163 -1.2088 42 1 0.9873 -2.4350 -2.1408 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329367638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:14 Heat of formation + Delta-G solvation = -128.329212 kcal Electronic energy + Delta-G solvation = -22937.504402 eV Core-core repulsion = 19496.553758 eV Total energy + Delta-G solvation = -3440.950644 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.95683 -39.29727 -37.28284 -36.33068 -33.43349 -31.84127 -31.54407 -29.97923 -29.03857 -27.64530 -25.05289 -24.10684 -23.11707 -21.86206 -21.34792 -19.94724 -18.35956 -17.42719 -16.99377 -16.43106 -16.03350 -15.89854 -15.39213 -15.19326 -14.79036 -14.43765 -13.87466 -13.74179 -13.53904 -13.26555 -13.03296 -12.65096 -12.40158 -12.31726 -12.08269 -11.90449 -11.69667 -11.47768 -11.03261 -10.94501 -10.89158 -10.54834 -10.43982 -10.25782 -10.12316 -9.92181 -9.65466 -9.26860 -9.13522 -8.87120 -8.44181 -7.78186 -6.00194 -4.09633 3.04695 3.18603 3.31948 3.37904 3.38948 3.76157 4.06698 4.33907 4.42476 4.55534 4.70069 4.88562 5.00163 5.05525 5.12039 5.21603 5.28479 5.29796 5.44693 5.45556 5.48703 5.53739 5.60673 5.66568 5.75955 5.92361 6.10933 6.26594 6.43702 6.55860 6.63263 6.80219 6.94161 6.99446 7.15638 7.26500 7.62339 7.85180 7.97953 8.20988 8.37284 8.84277 8.94860 9.56207 11.05024 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.027043 B = 0.003674 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.138339 B = 7620.244420 C = 8354.186093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.108 3.892 14 N -0.606 5.606 15 C 0.505 3.495 16 O -0.516 6.516 17 C 0.043 3.957 18 O -0.347 6.347 19 C 0.053 3.947 20 H 0.078 0.922 21 C -0.156 4.156 22 C 0.046 3.954 23 O -0.374 6.374 24 C 0.023 3.977 25 C 0.114 3.886 26 H 0.265 0.735 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.123 0.877 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.022 -16.384 -3.115 17.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.149 4.149 12 C -0.173 4.173 13 C -0.016 4.016 14 N -0.341 5.341 15 C 0.290 3.710 16 O -0.391 6.391 17 C -0.037 4.037 18 O -0.265 6.265 19 C -0.006 4.006 20 H 0.096 0.904 21 C -0.194 4.194 22 C -0.031 4.031 23 O -0.293 6.293 24 C -0.054 4.054 25 C -0.006 4.006 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.112 0.888 41 H 0.141 0.859 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.741 -15.711 -3.286 17.409 hybrid contribution 0.830 0.723 0.171 1.114 sum -5.911 -14.988 -3.115 16.410 Atomic orbital electron populations 1.69878 1.05742 1.27036 1.49050 1.25062 0.94882 0.99286 0.94789 0.86642 0.79559 0.83148 0.78562 1.20236 1.21236 1.20295 1.21032 0.92866 0.90119 1.52174 0.92391 1.18967 0.92606 0.92310 0.94002 0.95316 1.21629 0.98570 0.94009 1.00642 1.21948 0.98662 0.99248 0.97401 1.21658 0.93653 0.87495 0.98796 1.48478 1.04812 1.09148 1.71663 1.19990 0.82683 0.90020 0.78260 1.90744 1.60902 1.39117 1.48348 1.22436 0.82541 0.97122 1.01593 1.88120 1.16986 1.27239 1.94110 1.23542 0.94112 0.87053 0.95877 0.90427 1.23026 0.93106 1.04469 0.98777 1.23417 0.94566 0.95396 0.89709 1.89118 1.21956 1.50696 1.67539 1.23974 0.85738 0.98869 0.96843 1.22314 0.98642 0.81050 0.98585 0.92528 0.93125 0.92952 0.92137 0.92114 0.91500 0.91775 0.90856 0.90590 0.89775 0.88604 0.88870 0.91745 0.90815 0.88796 0.85933 0.93873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.74 11.40 55.43 0.63 -25.10 16 2 C 0.06 1.74 5.31 -17.82 -0.09 1.64 16 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.08 8.56 -34.44 -0.29 -14.37 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.04 0.98 2.25 -91.65 -0.21 0.78 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.14 5.11 -26.69 -0.14 -2.27 16 12 C -0.13 -2.05 6.08 -26.63 -0.16 -2.21 16 13 C 0.11 1.56 6.34 -3.73 -0.02 1.54 16 14 N -0.61 -11.87 2.97 -172.78 -0.51 -12.38 16 15 C 0.51 10.14 7.78 -10.99 -0.09 10.06 16 16 O -0.52 -13.08 15.91 -14.35 -0.23 -13.31 16 17 C 0.04 0.61 4.60 36.01 0.17 0.78 16 18 O -0.35 -5.32 9.51 -55.14 -0.52 -5.85 16 19 C 0.05 0.59 3.61 -25.16 -0.09 0.50 16 20 H 0.08 0.71 7.82 -51.93 -0.41 0.31 16 21 C -0.16 -1.56 6.90 -25.16 -0.17 -1.74 16 22 C 0.05 0.44 7.63 37.94 0.29 0.73 16 23 O -0.37 -4.35 11.65 -35.23 -0.41 -4.76 16 24 C 0.02 0.25 7.38 37.93 0.28 0.53 16 25 C 0.11 2.74 5.41 -3.70 -0.02 2.72 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.74 5.93 -51.93 -0.31 0.43 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.82 7.94 -51.93 -0.41 0.41 16 34 H 0.08 0.91 7.66 -51.93 -0.40 0.51 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.10 1.07 8.00 -51.93 -0.42 0.65 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.12 3.48 5.13 -51.93 -0.27 3.22 16 42 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 335.43 15.07 5.05 5.05 Total: -1.00 -32.98 335.43 -8.38 -41.36 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -6.82 Total: 0.10 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -0.55 Total: -1.32 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.12 Total: -37.49 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -1.16 Total: -23.91 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.98 -8.38 -41.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329367638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.966 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds