Wall clock time and date at job start Tue Mar 31 2020 05:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00247 * 2 1 4 4 H 1.48496 * 109.47213 * 239.99547 * 3 2 1 5 5 H 1.48503 * 109.47041 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47091 * 119.99327 * 3 2 1 7 7 C 1.37883 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99581 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99823 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.50034 * 59.93589 * 9 7 2 11 11 C 1.53039 * 109.49481 * 179.97438 * 9 7 2 12 12 C 1.53043 * 109.53744 * 181.34760 * 11 9 7 13 13 C 1.53192 * 109.31460 * 298.63500 * 12 11 9 14 14 N 1.46928 * 108.77372 * 54.63695 * 13 12 11 15 15 C 1.34773 * 120.63416 * 126.37141 * 14 13 12 16 16 O 1.21283 * 120.00124 * 179.97438 * 15 14 13 17 17 C 1.50706 * 119.99807 * 359.97438 * 15 14 13 18 18 O 1.42895 * 109.46903 * 180.02562 * 17 15 14 19 19 C 1.42903 * 114.00025 * 180.02562 * 18 17 15 20 20 H 1.08999 * 110.45308 * 328.85315 * 19 18 17 21 21 C 1.54505 * 110.51524 * 206.09377 * 19 18 17 22 22 C 1.54472 * 104.06681 * 241.35732 * 21 19 18 23 23 O 1.44425 * 104.80190 * 23.97459 * 22 21 19 24 24 C 1.44421 * 105.27967 * 319.48952 * 23 22 21 25 25 C 1.46933 * 118.73546 * 306.63920 * 14 13 12 26 26 H 0.97006 * 120.00297 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46088 * 61.32969 * 11 9 7 28 28 H 1.08995 * 109.45021 * 301.36038 * 11 9 7 29 29 H 1.09006 * 109.49935 * 178.68490 * 12 11 9 30 30 H 1.09001 * 109.49413 * 58.59023 * 12 11 9 31 31 H 1.08993 * 109.58997 * 294.84732 * 13 12 11 32 32 H 1.08998 * 109.58564 * 174.41966 * 13 12 11 33 33 H 1.09001 * 109.46411 * 60.00478 * 17 15 14 34 34 H 1.08999 * 109.46982 * 300.00722 * 17 15 14 35 35 H 1.09003 * 110.50916 * 0.02562 * 21 19 18 36 36 H 1.08997 * 110.51173 * 122.70595 * 21 19 18 37 37 H 1.08999 * 110.37330 * 142.80840 * 22 21 19 38 38 H 1.09007 * 110.37121 * 265.03877 * 22 21 19 39 39 H 1.08997 * 110.37554 * 281.67915 * 24 23 22 40 40 H 1.09004 * 110.37353 * 159.34062 * 24 23 22 41 41 H 1.09005 * 109.58547 * 173.14314 * 25 14 13 42 42 H 1.08992 * 109.59133 * 293.56929 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6236 -2.5570 -0.8889 11 6 2.2449 -3.6628 0.0005 12 6 1.4809 -4.9885 -0.0334 13 6 0.6051 -5.1007 1.2185 14 7 -0.2535 -3.9114 1.3030 15 6 -1.5900 -4.0365 1.4240 16 8 -2.2879 -3.0470 1.4934 17 6 -2.2172 -5.4060 1.4732 18 8 -3.6344 -5.2763 1.6024 19 6 -4.3294 -6.5237 1.6590 20 1 -3.8028 -7.2799 1.0769 21 6 -5.7797 -6.3589 1.1523 22 6 -6.6488 -6.7408 2.3709 23 8 -5.7999 -6.5103 3.5164 24 6 -4.4938 -6.9858 3.1240 25 6 0.3720 -2.5831 1.2472 26 1 -0.4851 0.8401 -0.0004 27 1 2.8557 -3.6187 0.9022 28 1 2.8873 -3.5914 -0.8771 29 1 2.1896 -5.8164 -0.0569 30 1 0.8511 -5.0227 -0.9224 31 1 1.2384 -5.1578 2.1036 32 1 -0.0147 -5.9948 1.1518 33 1 -1.8228 -5.9556 2.3278 34 1 -1.9842 -5.9455 0.5552 35 1 -5.9665 -5.3261 0.8582 36 1 -5.9722 -7.0347 0.3191 37 1 -7.5333 -6.1058 2.4202 38 1 -6.9385 -7.7903 2.3164 39 1 -4.4514 -8.0731 3.1859 40 1 -3.7229 -6.5387 3.7517 41 1 -0.4016 -1.8166 1.1994 42 1 0.9860 -2.4307 2.1347 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329367639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:17 Heat of formation + Delta-G solvation = -151.505910 kcal Electronic energy + Delta-G solvation = -22991.388801 eV Core-core repulsion = 19549.433140 eV Total energy + Delta-G solvation = -3441.955661 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.17469 -40.43807 -38.54943 -37.64200 -35.33486 -33.50297 -32.46500 -31.64816 -29.87255 -28.94696 -26.90452 -25.67927 -23.80711 -23.41202 -22.15922 -21.54551 -19.83600 -18.65716 -18.37439 -17.80938 -17.20135 -17.16230 -16.71875 -16.45559 -16.33096 -15.73981 -15.28484 -15.10283 -14.93967 -14.54066 -14.34838 -13.89991 -13.76347 -13.48691 -13.39767 -12.93553 -12.85786 -12.70106 -12.66359 -12.38962 -12.27922 -12.25811 -11.81370 -11.73215 -11.63213 -11.11805 -11.05722 -10.94625 -10.59629 -10.48835 -10.40112 -9.42515 -8.11902 -6.29865 1.39604 1.41327 1.49895 1.68219 1.88037 2.40786 2.88044 3.02202 3.16712 3.52627 3.69034 3.88395 4.00475 4.08307 4.15737 4.17714 4.21413 4.29192 4.35394 4.47123 4.52089 4.61256 4.74215 4.75530 4.80985 4.81935 4.87779 4.90477 5.08499 5.11707 5.26529 5.29293 5.36077 5.53709 5.62720 5.76710 5.89530 6.00042 6.19497 6.32955 6.66804 6.84149 7.33367 7.41272 8.91020 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.026083 B = 0.003761 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.226069 B = 7443.269752 C = 8189.407743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.008 3.992 3 Si 0.958 3.042 4 H -0.266 1.266 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.538 4.538 8 H 0.064 0.936 9 C 0.038 3.962 10 H -0.015 1.015 11 C -0.106 4.106 12 C -0.127 4.127 13 C 0.100 3.900 14 N -0.608 5.608 15 C 0.490 3.510 16 O -0.588 6.588 17 C 0.055 3.945 18 O -0.389 6.389 19 C 0.044 3.956 20 H 0.117 0.883 21 C -0.156 4.156 22 C 0.043 3.957 23 O -0.407 6.407 24 C 0.020 3.980 25 C 0.125 3.875 26 H 0.259 0.741 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.108 0.892 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.063 0.937 36 H 0.118 0.882 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.764 -21.998 2.646 22.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.191 4.191 3 Si 0.783 3.217 4 H -0.191 1.191 5 H -0.216 1.216 6 H -0.191 1.191 7 C -0.576 4.576 8 H 0.082 0.918 9 C 0.019 3.981 10 H 0.003 0.997 11 C -0.144 4.144 12 C -0.165 4.165 13 C -0.021 4.021 14 N -0.342 5.342 15 C 0.278 3.722 16 O -0.468 6.468 17 C -0.023 4.023 18 O -0.308 6.308 19 C -0.013 4.013 20 H 0.135 0.865 21 C -0.193 4.193 22 C -0.034 4.034 23 O -0.326 6.326 24 C -0.056 4.056 25 C 0.003 3.997 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.126 0.874 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.081 0.919 36 H 0.137 0.863 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.121 0.879 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.432 -21.102 2.904 21.983 hybrid contribution 0.391 1.555 -0.288 1.629 sum -5.042 -19.547 2.617 20.356 Atomic orbital electron populations 1.70096 1.07554 1.27315 1.50614 1.25935 0.95517 1.03098 0.94595 0.85604 0.78238 0.78638 0.79171 1.19134 1.21632 1.19107 1.21528 0.93349 0.91567 1.51181 0.91827 1.18825 0.93125 0.93988 0.92146 0.99706 1.21522 0.97632 0.94305 1.00952 1.21931 0.99114 0.98048 0.97423 1.22117 0.93941 0.86764 0.99292 1.48507 1.05619 1.09078 1.70981 1.21254 0.82409 0.92064 0.76438 1.90711 1.62551 1.42163 1.51408 1.22403 0.82337 0.92768 1.04838 1.88140 1.17510 1.30635 1.94484 1.23933 0.94228 0.86229 0.96915 0.86548 1.23133 0.92557 1.03679 0.99958 1.23609 0.94050 1.02262 0.83442 1.89129 1.21234 1.84578 1.37702 1.24164 0.85795 1.00405 0.95279 1.21594 0.97067 0.83001 0.98064 0.93214 0.92404 0.92993 0.87353 0.92906 0.89811 0.86527 0.86888 0.87050 0.91851 0.86348 0.88930 0.89151 0.87942 0.89611 0.91064 0.94573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.43 11.39 21.45 0.24 -57.18 16 2 C 0.01 0.45 5.31 84.66 0.45 0.90 16 3 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.54 -29.95 8.56 25.60 0.22 -29.73 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.04 1.95 2.24 -11.61 -0.03 1.92 16 10 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 11 C -0.11 -3.99 5.11 30.62 0.16 -3.83 16 12 C -0.13 -3.42 6.08 30.67 0.19 -3.24 16 13 C 0.10 2.54 6.34 86.36 0.55 3.09 16 14 N -0.61 -23.99 2.98 -819.72 -2.44 -26.43 16 15 C 0.49 20.29 7.78 87.66 0.68 20.97 16 16 O -0.59 -32.56 15.91 16.00 0.25 -32.31 16 17 C 0.06 1.46 4.63 71.24 0.33 1.79 16 18 O -0.39 -12.07 9.51 -129.94 -1.24 -13.31 16 19 C 0.04 0.86 3.58 31.61 0.11 0.98 16 20 H 0.12 1.32 7.86 -2.39 -0.02 1.30 16 21 C -0.16 -2.83 6.90 31.61 0.22 -2.61 16 22 C 0.04 0.73 7.63 72.48 0.55 1.29 16 23 O -0.41 -10.14 11.65 -148.98 -1.74 -11.87 16 24 C 0.02 0.38 7.38 72.49 0.53 0.91 16 25 C 0.13 6.36 5.38 86.22 0.46 6.82 16 26 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 27 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.12 1.85 5.93 -2.39 -0.01 1.83 16 33 H 0.11 2.05 7.94 -2.39 -0.02 2.03 16 34 H 0.11 2.11 7.66 -2.39 -0.02 2.10 16 35 H 0.06 1.55 8.00 -2.39 -0.02 1.53 16 36 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.09 1.75 8.09 -2.38 -0.02 1.73 16 41 H 0.07 4.42 5.12 -2.38 -0.01 4.41 16 42 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -84.53 335.41 2.53 -82.00 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.99 Total: 12.83 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 4.43 Total: -0.75 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -2.20 Total: -83.61 kcal Atomic # 8 Polarization: -54.77 SS G_CDS: -2.72 Total: -57.49 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -84.53 2.53 -82.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329367639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.506 kcal (2) G-P(sol) polarization free energy of solvation -84.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds