Wall clock time and date at job start Tue Mar 31 2020 05:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99599 * 2 1 4 4 H 1.48498 * 109.46969 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47247 * 299.99875 * 3 2 1 6 6 H 1.48502 * 109.47224 * 60.00274 * 3 2 1 7 7 C 1.37875 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99691 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00125 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.49396 * 300.05960 * 9 7 2 11 11 C 1.53035 * 109.52407 * 60.13869 * 9 7 2 12 12 C 1.53043 * 109.53932 * 181.33051 * 11 9 7 13 13 C 1.53622 * 109.24403 * 298.51759 * 12 11 9 14 14 N 1.46928 * 108.54153 * 54.85214 * 13 12 11 15 15 C 1.34782 * 120.63090 * 126.36937 * 14 13 12 16 16 O 1.21279 * 120.00106 * 175.55616 * 15 14 13 17 17 C 1.50699 * 119.99935 * 355.28819 * 15 14 13 18 18 O 1.42903 * 109.54359 * 57.68833 * 17 15 14 19 19 C 1.53179 * 109.54020 * 297.51318 * 17 15 14 20 20 C 1.53104 * 109.15627 * 183.24169 * 19 17 15 21 21 O 1.42903 * 109.48808 * 57.47434 * 20 19 17 22 22 C 1.42901 * 114.09572 * 298.89145 * 21 20 19 23 23 C 1.53091 * 109.41797 * 61.15633 * 22 21 20 24 24 C 1.46931 * 118.73927 * 306.09424 * 14 13 12 25 25 H 0.97002 * 120.00469 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46447 * 301.35821 * 11 9 7 27 27 H 1.09005 * 109.45645 * 61.32874 * 11 9 7 28 28 H 1.09007 * 109.48866 * 58.58969 * 12 11 9 29 29 H 1.08990 * 109.49971 * 178.65299 * 12 11 9 30 30 H 1.09000 * 109.73802 * 295.11539 * 13 12 11 31 31 H 1.09000 * 109.66332 * 174.54184 * 13 12 11 32 32 H 0.96695 * 114.00460 * 316.24499 * 18 17 15 33 33 H 1.08996 * 109.52486 * 303.06340 * 19 17 15 34 34 H 1.09002 * 109.52215 * 63.25098 * 19 17 15 35 35 H 1.09005 * 109.40702 * 297.48818 * 20 19 17 36 36 H 1.09000 * 109.49469 * 177.51280 * 20 19 17 37 37 H 1.09004 * 109.48109 * 301.17252 * 22 21 20 38 38 H 1.08998 * 109.47861 * 181.14079 * 22 21 20 39 39 H 1.08997 * 109.51940 * 182.48602 * 23 22 21 40 40 H 1.09003 * 109.52189 * 62.29226 * 23 22 21 41 41 H 1.09003 * 109.58274 * 173.65137 * 24 14 13 42 42 H 1.09001 * 109.58435 * 294.07044 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6231 -2.5567 0.8896 11 6 0.3739 -2.5834 -1.2506 12 6 -0.4164 -3.8938 -1.2345 13 6 0.5638 -5.0765 -1.2511 14 7 1.5002 -4.9230 -0.1293 15 6 1.6759 -5.9205 0.7600 16 8 2.5096 -5.8136 1.6342 17 6 0.8321 -7.1660 0.6717 18 8 0.9970 -7.7649 -0.6152 19 6 -0.6410 -6.8029 0.8829 20 6 -1.4806 -8.0831 0.8722 21 8 -1.0059 -8.9729 1.8847 22 6 0.3516 -9.3839 1.7106 23 6 1.2650 -8.1562 1.7571 24 6 2.2461 -3.6639 0.0011 25 1 -0.4851 0.8400 -0.0004 26 1 -0.3186 -1.7417 -1.2660 27 1 1.0046 -2.5509 -2.1391 28 1 -1.0287 -3.9381 -0.3337 29 1 -1.0587 -3.9422 -2.1137 30 1 1.1168 -5.0832 -2.1903 31 1 0.0131 -6.0109 -1.1421 32 1 0.9811 -7.1339 -1.3477 33 1 -0.7582 -6.2998 1.8427 34 1 -0.9718 -6.1421 0.0816 35 1 -1.3962 -8.5635 -0.1026 36 1 -2.5242 -7.8354 1.0661 37 1 0.4601 -9.8813 0.7467 38 1 0.6279 -10.0731 2.5085 39 1 2.2960 -8.4625 1.5805 40 1 1.1874 -7.6814 2.7353 41 1 2.8058 -3.6660 0.9365 42 1 2.9335 -3.5578 -0.8381 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330897810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:32 Heat of formation + Delta-G solvation = -125.683731 kcal Electronic energy + Delta-G solvation = -24195.797109 eV Core-core repulsion = 20754.961182 eV Total energy + Delta-G solvation = -3440.835927 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.00974 -38.71876 -36.97703 -36.51512 -33.54554 -32.14508 -31.48650 -31.28011 -30.23697 -26.28492 -25.32614 -24.06625 -23.73260 -21.93285 -20.81068 -20.19650 -18.93595 -17.28596 -16.63641 -16.45491 -16.29622 -16.03564 -15.16564 -14.90873 -14.73923 -14.47859 -14.24281 -13.65981 -13.54607 -13.08427 -12.87278 -12.79183 -12.40022 -12.28842 -12.20187 -12.05806 -11.72515 -11.36862 -11.05784 -10.97502 -10.78843 -10.65320 -10.47735 -10.29088 -10.04043 -9.87158 -9.83155 -9.56837 -9.15463 -8.88671 -8.47733 -8.08185 -6.09955 -4.17201 2.70440 3.23700 3.24285 3.32902 3.37560 3.79080 4.02435 4.35740 4.37915 4.55268 4.67776 4.86627 4.94768 5.17261 5.20544 5.31991 5.36608 5.40634 5.44648 5.54444 5.58750 5.67035 5.85956 5.96481 5.98339 6.14317 6.17674 6.23936 6.33258 6.52727 6.64516 6.78775 7.02390 7.09920 7.18974 7.27431 7.59944 7.74212 7.84737 7.97290 8.26139 8.39811 8.86401 9.48451 10.95741 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.032085 B = 0.004466 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.479783 B = 6268.352931 C = 6522.384644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.058 0.942 9 C 0.041 3.959 10 H 0.029 0.971 11 C -0.113 4.113 12 C -0.134 4.134 13 C 0.082 3.918 14 N -0.599 5.599 15 C 0.487 3.513 16 O -0.536 6.536 17 C 0.123 3.877 18 O -0.554 6.554 19 C -0.188 4.188 20 C 0.070 3.930 21 O -0.384 6.384 22 C 0.065 3.935 23 C -0.127 4.127 24 C 0.116 3.884 25 H 0.261 0.739 26 H 0.097 0.903 27 H 0.037 0.963 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.380 0.620 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.193 -14.937 -2.796 15.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.048 0.952 11 C -0.151 4.151 12 C -0.172 4.172 13 C -0.041 4.041 14 N -0.332 5.332 15 C 0.273 3.727 16 O -0.413 6.413 17 C 0.080 3.920 18 O -0.365 6.365 19 C -0.226 4.226 20 C -0.007 4.007 21 O -0.303 6.303 22 C -0.011 4.011 23 C -0.165 4.165 24 C -0.005 4.005 25 H 0.070 0.930 26 H 0.116 0.884 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.233 0.767 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.076 0.924 36 H 0.114 0.886 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.961 -15.334 -1.836 15.725 hybrid contribution 0.548 1.773 -0.700 1.983 sum -2.414 -13.562 -2.536 14.006 Atomic orbital electron populations 1.69870 1.05914 1.26494 1.50466 1.24930 0.94862 0.99137 0.94807 0.86513 0.80199 0.83570 0.77612 1.19705 1.20987 1.20971 1.21097 0.93059 0.90186 1.51031 0.92386 1.18975 0.92916 0.91157 0.94808 0.95244 1.21640 0.99504 0.95251 0.98666 1.22086 0.97441 0.96397 1.01256 1.22352 0.92204 0.99884 0.89654 1.48380 1.42113 1.16149 1.26530 1.21148 0.84251 0.85011 0.82259 1.90672 1.35013 1.80404 1.35227 1.21428 0.94019 0.91176 0.85410 1.86579 1.95833 1.39152 1.14974 1.23084 0.94441 0.99925 1.05132 1.22471 0.97605 0.88732 0.91896 1.87906 1.27654 1.64762 1.49981 1.22559 0.81240 0.95309 1.02040 1.22025 1.00994 0.95848 0.97599 1.22070 0.95144 0.81552 1.01699 0.92953 0.88442 0.94430 0.92087 0.92135 0.91064 0.90075 0.76675 0.89448 0.88814 0.92377 0.88620 0.92295 0.88698 0.89591 0.88973 0.90222 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.30 11.32 55.43 0.63 -23.67 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -13.59 8.56 -34.44 -0.29 -13.88 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.96 2.25 -91.66 -0.21 0.75 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.38 4.96 -26.69 -0.13 -2.51 16 12 C -0.13 -2.15 5.83 -26.39 -0.15 -2.30 16 13 C 0.08 1.12 4.22 -3.49 -0.01 1.11 16 14 N -0.60 -10.44 2.97 -172.50 -0.51 -10.95 16 15 C 0.49 8.65 6.72 -10.98 -0.07 8.58 16 16 O -0.54 -11.39 15.38 5.56 0.09 -11.30 16 17 C 0.12 1.73 0.66 -91.59 -0.06 1.67 16 18 O -0.55 -6.97 11.81 -35.23 -0.42 -7.38 16 19 C -0.19 -2.36 4.77 -26.58 -0.13 -2.49 16 20 C 0.07 0.77 6.69 37.21 0.25 1.02 16 21 O -0.38 -4.89 10.77 -35.23 -0.38 -5.27 16 22 C 0.07 0.75 6.69 37.20 0.25 0.99 16 23 C -0.13 -1.70 4.48 -26.59 -0.12 -1.82 16 24 C 0.12 2.42 5.64 -3.71 -0.02 2.40 16 25 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 26 H 0.10 2.37 6.05 -51.93 -0.31 2.05 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.03 7.77 -51.92 -0.40 0.63 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 0.90 2.94 -51.93 -0.15 0.75 16 32 H 0.38 4.05 5.35 45.56 0.24 4.29 16 33 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.09 1.10 4.70 -51.93 -0.24 0.86 16 35 H 0.06 0.60 7.82 -51.93 -0.41 0.19 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.65 7.82 -51.93 -0.41 0.25 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.09 1.32 7.99 -51.93 -0.41 0.91 16 41 H 0.08 1.81 7.03 -51.93 -0.37 1.45 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 316.69 15.07 4.77 4.77 Total: -1.00 -29.97 316.69 -7.45 -37.42 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.81 Total: 5.58 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -0.80 Total: -4.87 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.12 Total: -34.63 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.71 Total: -23.96 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.97 -7.45 -37.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330897810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.262 kcal (2) G-P(sol) polarization free energy of solvation -29.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds