Wall clock time and date at job start Tue Mar 31 2020 05:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99714 * 2 1 4 4 H 1.48500 * 109.47097 * 269.99834 * 3 2 1 5 5 H 1.48498 * 109.47234 * 29.99693 * 3 2 1 6 6 H 1.48495 * 109.47413 * 149.99841 * 3 2 1 7 7 C 1.37874 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00263 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99863 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.52196 * 59.92600 * 9 7 2 11 11 C 1.53037 * 109.49921 * 299.84070 * 9 7 2 12 12 C 1.53049 * 109.53859 * 178.68416 * 11 9 7 13 13 C 1.52760 * 109.38286 * 61.23573 * 12 11 9 14 14 N 1.46926 * 109.00976 * 305.59420 * 13 12 11 15 15 C 1.34779 * 120.62692 * 233.58282 * 14 13 12 16 16 O 1.21284 * 120.00184 * 5.64012 * 15 14 13 17 17 C 1.50697 * 120.00114 * 185.64179 * 15 14 13 18 18 O 1.42903 * 109.61650 * 48.29785 * 17 15 14 19 19 C 1.53175 * 109.54109 * 288.07929 * 17 15 14 20 20 C 1.53100 * 109.16479 * 183.14999 * 19 17 15 21 21 O 1.42903 * 109.41262 * 57.60559 * 20 19 17 22 22 C 1.42900 * 114.10112 * 298.84783 * 21 20 19 23 23 C 1.53092 * 109.41835 * 61.15381 * 22 21 20 24 24 C 1.46920 * 118.74139 * 53.30522 * 14 13 12 25 25 H 0.96998 * 120.00392 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46293 * 298.70144 * 11 9 7 27 27 H 1.09002 * 109.46211 * 58.66384 * 11 9 7 28 28 H 1.08995 * 109.49647 * 181.31788 * 12 11 9 29 29 H 1.09000 * 109.49159 * 301.38195 * 12 11 9 30 30 H 1.08992 * 109.50841 * 185.70586 * 13 12 11 31 31 H 1.08999 * 109.42883 * 65.42905 * 13 12 11 32 32 H 0.96699 * 114.00041 * 310.33362 * 18 17 15 33 33 H 1.08996 * 109.52477 * 303.05361 * 19 17 15 34 34 H 1.09000 * 109.52858 * 63.24736 * 19 17 15 35 35 H 1.08998 * 109.47676 * 297.62538 * 20 19 17 36 36 H 1.08995 * 109.49269 * 177.59424 * 20 19 17 37 37 H 1.09005 * 109.47631 * 301.17324 * 22 21 20 38 38 H 1.08999 * 109.49101 * 181.14784 * 22 21 20 39 39 H 1.09001 * 109.52332 * 182.49346 * 23 22 21 40 40 H 1.08999 * 109.56916 * 62.32919 * 23 22 21 41 41 H 1.09005 * 109.58408 * 66.43000 * 24 14 13 42 42 H 1.08998 * 109.58706 * 186.85287 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6228 -2.5578 -0.8870 11 6 0.3745 -2.5818 1.2534 12 6 -0.4159 -3.8923 1.2392 13 6 0.5561 -5.0707 1.2503 14 7 1.5004 -4.9229 0.1344 15 6 1.6749 -5.9211 -0.7542 16 8 0.9775 -6.9118 -0.6981 17 6 2.7367 -5.8063 -1.8174 18 8 3.9697 -5.3976 -1.2219 19 6 2.3053 -4.7732 -2.8628 20 6 3.3519 -4.7205 -3.9790 21 8 3.4993 -6.0205 -4.5537 22 6 3.9464 -7.0181 -3.6334 23 6 2.9238 -7.1630 -2.5034 24 6 2.2461 -3.6639 0.0021 25 1 -0.4850 0.8400 -0.0004 26 1 1.0056 -2.5480 2.1416 27 1 -0.3180 -1.7402 1.2680 28 1 -1.0574 -3.9398 2.1190 29 1 -1.0289 -3.9375 0.3390 30 1 0.0006 -6.0018 1.1381 31 1 1.1031 -5.0806 2.1930 32 1 3.8903 -4.6279 -0.6419 33 1 1.3405 -5.0595 -3.2815 34 1 2.2234 -3.7926 -2.3939 35 1 4.3069 -4.3949 -3.5667 36 1 3.0292 -4.0179 -4.7473 37 1 4.9093 -6.7225 -3.2166 38 1 4.0521 -7.9706 -4.1525 39 1 3.2842 -7.8916 -1.7772 40 1 1.9713 -7.4982 -2.9138 41 1 2.9338 -3.5567 0.8410 42 1 2.8054 -3.6671 -0.9335 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330897811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:35 Heat of formation + Delta-G solvation = -127.246164 kcal Electronic energy + Delta-G solvation = -24433.993400 eV Core-core repulsion = 20993.089721 eV Total energy + Delta-G solvation = -3440.903679 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.90377 -38.66874 -36.99441 -36.35959 -33.48144 -31.97393 -31.76512 -31.00672 -30.25866 -26.18665 -25.27393 -24.11940 -23.68708 -21.93994 -20.67498 -19.99269 -19.05816 -17.19662 -16.50876 -16.32944 -16.25206 -15.89782 -15.19222 -14.85269 -14.69817 -14.51008 -14.09904 -13.68342 -13.42125 -13.04843 -12.83431 -12.76533 -12.32933 -12.25044 -12.12816 -11.91580 -11.56411 -11.25480 -11.10702 -11.00029 -10.86769 -10.55169 -10.45862 -10.20059 -10.09643 -9.89141 -9.73567 -9.61084 -9.07267 -8.95158 -8.54364 -8.11080 -6.17355 -4.27134 2.73945 3.19422 3.24605 3.27807 3.30823 3.93078 4.19544 4.28798 4.53365 4.70682 4.80443 5.02460 5.12314 5.30981 5.36490 5.47652 5.52092 5.58481 5.64563 5.72441 5.74499 5.79561 5.89837 5.93592 6.05437 6.10846 6.19085 6.22577 6.31851 6.41379 6.63666 6.76470 7.00896 7.16832 7.23820 7.49139 7.51593 7.70828 7.73353 7.89860 8.16627 8.36968 8.76147 9.39696 10.87726 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.018001 B = 0.006129 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.082565 B = 4567.425741 C = 5656.123439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.067 3.933 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.043 3.957 10 H 0.032 0.968 11 C -0.113 4.113 12 C -0.135 4.135 13 C 0.113 3.887 14 N -0.600 5.600 15 C 0.493 3.507 16 O -0.549 6.549 17 C 0.126 3.874 18 O -0.559 6.559 19 C -0.189 4.189 20 C 0.070 3.930 21 O -0.386 6.386 22 C 0.065 3.935 23 C -0.124 4.124 24 C 0.084 3.916 25 H 0.263 0.737 26 H 0.037 0.963 27 H 0.097 0.903 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.386 0.614 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.141 -8.613 -2.525 10.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.077 0.923 9 C 0.024 3.976 10 H 0.050 0.950 11 C -0.151 4.151 12 C -0.173 4.173 13 C -0.009 4.009 14 N -0.332 5.332 15 C 0.280 3.720 16 O -0.427 6.427 17 C 0.082 3.918 18 O -0.372 6.372 19 C -0.227 4.227 20 C -0.007 4.007 21 O -0.304 6.304 22 C -0.012 4.012 23 C -0.162 4.162 24 C -0.037 4.037 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.115 0.885 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.241 0.759 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.078 0.922 36 H 0.116 0.884 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.085 0.915 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.806 -9.525 -2.988 11.079 hybrid contribution 0.119 1.645 0.833 1.848 sum 4.924 -7.879 -2.155 9.538 Atomic orbital electron populations 1.69868 1.05959 1.26794 1.49590 1.24931 0.94834 0.99188 0.94612 0.86578 0.79861 0.83266 0.78230 1.20576 1.21183 1.19809 1.21019 0.92911 0.90107 1.52149 0.92317 1.18955 0.92667 0.90598 0.95368 0.94979 1.21637 0.99482 0.95632 0.98326 1.21926 0.97794 0.96409 1.01166 1.21531 0.91399 0.99868 0.88104 1.48342 1.42110 1.15492 1.27264 1.21261 0.85134 0.82968 0.82682 1.90633 1.47659 1.31338 1.73075 1.21322 0.83046 0.96489 0.90955 1.86541 1.30617 1.53587 1.66465 1.23067 1.01185 1.00862 0.97613 1.22483 0.97936 0.84748 0.95503 1.87891 1.87939 1.18398 1.36212 1.22536 0.96328 0.92038 0.90249 1.21998 1.01907 0.94193 0.98151 1.22614 0.96328 0.83784 1.00975 0.92742 0.94430 0.88504 0.92330 0.92425 0.90164 0.92062 0.75894 0.89730 0.88034 0.92175 0.88445 0.92259 0.88852 0.89943 0.88988 0.91461 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.34 11.32 55.43 0.63 -22.71 16 2 C 0.07 1.69 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 19.64 29.54 -169.99 -5.02 14.62 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.52 -12.62 8.56 -34.44 -0.29 -12.92 16 8 H 0.06 1.37 7.74 -52.49 -0.41 0.96 16 9 C 0.04 0.94 2.25 -91.65 -0.21 0.73 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.39 4.96 -26.69 -0.13 -2.53 16 12 C -0.13 -2.45 6.07 -26.83 -0.16 -2.62 16 13 C 0.11 1.94 6.41 -3.93 -0.03 1.91 16 14 N -0.60 -10.58 2.98 -173.04 -0.52 -11.10 16 15 C 0.49 8.87 6.70 -10.99 -0.07 8.79 16 16 O -0.55 -11.14 15.34 5.55 0.09 -11.05 16 17 C 0.13 1.95 0.66 -91.59 -0.06 1.88 16 18 O -0.56 -8.32 11.87 -35.23 -0.42 -8.74 16 19 C -0.19 -2.82 4.81 -26.59 -0.13 -2.95 16 20 C 0.07 0.94 6.69 37.21 0.25 1.19 16 21 O -0.39 -5.46 10.77 -35.23 -0.38 -5.84 16 22 C 0.07 0.82 6.69 37.20 0.25 1.07 16 23 C -0.12 -1.76 4.58 -26.59 -0.12 -1.88 16 24 C 0.08 1.48 3.39 -3.71 -0.01 1.47 16 25 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.10 2.36 6.05 -51.93 -0.31 2.04 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.08 1.39 7.00 -51.93 -0.36 1.03 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.39 5.41 4.91 45.56 0.22 5.63 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.10 1.61 5.55 -51.93 -0.29 1.32 16 35 H 0.06 0.78 7.82 -51.93 -0.41 0.37 16 36 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.06 0.74 7.82 -51.93 -0.41 0.33 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.09 1.36 7.87 -51.93 -0.41 0.95 16 41 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 42 H 0.08 1.33 2.90 -51.93 -0.15 1.18 16 LS Contribution 317.55 15.07 4.79 4.79 Total: -1.00 -27.74 317.55 -7.53 -35.27 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -5.88 Total: 9.02 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -0.81 Total: -4.25 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: 0.11 Total: -33.81 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.71 Total: -25.63 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.74 -7.53 -35.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330897811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.975 kcal (2) G-P(sol) polarization free energy of solvation -27.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds