Wall clock time and date at job start Tue Mar 31 2020 05:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00308 * 2 1 4 4 H 1.48495 * 109.47678 * 270.00269 * 3 2 1 5 5 H 1.48509 * 109.46886 * 30.00595 * 3 2 1 6 6 H 1.48502 * 109.47024 * 149.99989 * 3 2 1 7 7 C 1.37881 * 119.99573 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99456 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00191 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47266 * 180.02562 * 9 7 2 11 11 C 1.46504 * 119.99991 * 270.00608 * 10 9 7 12 12 C 1.53002 * 109.46715 * 269.99581 * 11 10 9 13 13 C 1.52999 * 117.49929 * 243.74752 * 12 11 10 14 14 C 1.53000 * 117.50034 * 175.08719 * 12 11 10 15 15 C 1.34770 * 120.00332 * 89.99535 * 10 9 7 16 16 O 1.21290 * 120.00061 * 0.02562 * 15 10 9 17 17 C 1.50701 * 120.00655 * 180.02562 * 15 10 9 18 18 O 1.42893 * 109.47387 * 180.02562 * 17 15 10 19 19 C 1.42905 * 113.99965 * 179.97438 * 18 17 15 20 20 H 1.09001 * 110.56426 * 328.77850 * 19 18 17 21 21 C 1.54507 * 110.51430 * 206.09545 * 19 18 17 22 22 C 1.54477 * 104.06510 * 241.35656 * 21 19 18 23 23 O 1.44688 * 104.83958 * 23.98057 * 22 21 19 24 24 C 1.44428 * 105.13885 * 319.51776 * 23 22 21 25 25 H 0.96996 * 119.99877 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47139 * 60.00304 * 9 7 2 27 27 H 1.09002 * 109.47178 * 299.99856 * 9 7 2 28 28 H 1.09000 * 109.47606 * 29.98911 * 11 10 9 29 29 H 1.08992 * 109.47497 * 150.00176 * 11 10 9 30 30 H 1.09004 * 115.54959 * 29.41747 * 12 11 10 31 31 H 1.08999 * 117.49473 * 359.97438 * 13 12 11 32 32 H 1.08999 * 117.49815 * 145.01925 * 13 12 11 33 33 H 1.08999 * 117.49802 * 214.98155 * 14 12 11 34 34 H 1.09002 * 117.49763 * 359.97438 * 14 12 11 35 35 H 1.09003 * 109.46735 * 59.99766 * 17 15 10 36 36 H 1.09006 * 109.46743 * 300.00732 * 17 15 10 37 37 H 1.09000 * 110.50930 * 0.02562 * 21 19 18 38 38 H 1.09000 * 110.50918 * 122.57516 * 21 19 18 39 39 H 1.08996 * 110.37125 * 142.80919 * 22 21 19 40 40 H 1.08999 * 110.37544 * 265.03608 * 22 21 19 41 41 H 1.09002 * 110.37130 * 281.60836 * 24 23 22 42 42 H 1.08999 * 110.37385 * 159.38239 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 2.6789 -4.1695 -1.2693 12 6 1.7482 -5.3007 -1.7110 13 6 2.3393 -6.7093 -1.7965 14 6 2.0097 -5.9381 -3.0771 15 6 2.6408 -4.1250 1.1666 16 8 2.2465 -3.6643 2.2170 17 6 3.6205 -5.2701 1.1667 18 8 3.9295 -5.6325 2.5139 19 6 4.8551 -6.7155 2.6267 20 1 4.7460 -7.4015 1.7867 21 6 4.6548 -7.4617 3.9647 22 6 6.0056 -7.2925 4.6948 23 8 6.5910 -6.1009 4.1196 24 6 6.3033 -6.1836 2.7067 25 1 -0.4850 0.8400 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.6866 -3.3879 -2.0290 29 1 3.6883 -4.5596 -1.1390 30 1 0.7109 -5.2089 -1.3888 31 1 3.3914 -6.8299 -1.5385 32 1 1.6909 -7.5442 -1.5309 33 1 1.1446 -6.2660 -3.6534 34 1 2.8447 -5.5513 -3.6613 35 1 4.5330 -4.9676 0.6529 36 1 3.1804 -6.1247 0.6526 37 1 3.8495 -7.0050 4.5399 38 1 4.4444 -8.5162 3.7861 39 1 5.8445 -7.1574 5.7643 40 1 6.6454 -8.1563 4.5143 41 1 6.9894 -6.8764 2.2196 42 1 6.3712 -5.1975 2.2472 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331973145.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:13 Heat of formation + Delta-G solvation = -95.689110 kcal Electronic energy + Delta-G solvation = -22886.965073 eV Core-core repulsion = 19447.429810 eV Total energy + Delta-G solvation = -3439.535263 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.85575 -39.07818 -37.30788 -36.61593 -34.38804 -32.55024 -31.55421 -29.13971 -28.43939 -27.14995 -25.70075 -23.13036 -22.50429 -22.37880 -21.28114 -20.73257 -18.64431 -17.35752 -16.90111 -16.46706 -16.16231 -16.06364 -15.35160 -15.28228 -14.89860 -14.79514 -14.28713 -14.16198 -13.37797 -13.23283 -12.77673 -12.56331 -12.19572 -12.10935 -12.03832 -11.70344 -11.58235 -11.51586 -11.43746 -11.21140 -10.90800 -10.87127 -10.61221 -10.38394 -10.17323 -10.08237 -9.88888 -9.61269 -9.43164 -8.83881 -8.41986 -7.70283 -6.03028 -4.07586 3.24164 3.31685 3.36721 3.39215 3.45149 3.80113 3.81528 4.17583 4.40023 4.47620 4.68193 4.79825 4.82398 4.91203 4.93858 4.96221 5.16734 5.23132 5.28046 5.30712 5.34744 5.41102 5.44448 5.49298 5.55735 5.60513 5.68569 5.79555 5.89594 5.92029 6.03128 6.10917 6.38978 6.55986 6.97478 7.21937 7.44460 7.54218 7.93558 8.24055 8.37566 8.91234 9.08877 9.57510 11.05186 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.013507 B = 0.004856 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.430771 B = 5764.576137 C = 7225.910380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.248 3.752 10 N -0.594 5.594 11 C 0.141 3.859 12 C -0.166 4.166 13 C -0.188 4.188 14 C -0.174 4.174 15 C 0.508 3.492 16 O -0.518 6.518 17 C 0.040 3.960 18 O -0.344 6.344 19 C 0.053 3.947 20 H 0.076 0.924 21 C -0.153 4.153 22 C 0.045 3.955 23 O -0.368 6.368 24 C 0.022 3.978 25 H 0.263 0.737 26 H 0.034 0.966 27 H 0.044 0.956 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.645 -18.440 -2.001 20.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.076 0.924 9 C 0.129 3.871 10 N -0.327 5.327 11 C 0.016 3.984 12 C -0.186 4.186 13 C -0.225 4.225 14 C -0.212 4.212 15 C 0.293 3.707 16 O -0.393 6.393 17 C -0.039 4.039 18 O -0.262 6.262 19 C -0.006 4.006 20 H 0.094 0.906 21 C -0.191 4.191 22 C -0.032 4.032 23 O -0.286 6.286 24 C -0.055 4.055 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.128 0.872 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.294 -17.773 -1.135 20.088 hybrid contribution 0.428 0.568 -0.564 0.908 sum 9.721 -17.204 -1.699 19.834 Atomic orbital electron populations 1.69929 1.05996 1.27022 1.50413 1.24924 0.94871 0.99203 0.95029 0.86500 0.79935 0.83079 0.77945 1.20657 1.21072 1.19857 1.21432 0.93370 0.90660 1.51117 0.92445 1.19303 0.87358 0.81908 0.98518 1.48135 1.46104 1.34973 1.03485 1.21044 0.94821 0.94820 0.87708 1.22979 1.01623 0.93706 1.00253 1.23066 1.01279 0.95417 1.02764 1.22905 1.03415 1.04198 0.90665 1.19865 0.82518 0.83652 0.84621 1.90710 1.57144 1.60616 1.30798 1.22499 0.98611 0.97901 0.84938 1.88164 1.62336 1.51142 1.24538 1.23544 0.89529 0.89007 0.98510 0.90559 1.23049 0.99775 1.00498 0.95781 1.23450 0.92324 0.88299 0.99108 1.89239 1.77616 1.42002 1.19749 1.24000 0.94866 1.02821 0.83862 0.92717 0.94758 0.93813 0.89152 0.91709 0.87200 0.89098 0.89096 0.88908 0.88688 0.91184 0.90607 0.88773 0.89640 0.88823 0.92264 0.91626 0.88399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 22.07 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.53 -15.00 9.39 -34.44 -0.32 -15.33 16 8 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 9 C 0.25 6.47 5.16 -5.19 -0.03 6.44 16 10 N -0.59 -12.47 2.46 -175.06 -0.43 -12.90 16 11 C 0.14 2.19 5.49 -4.04 -0.02 2.17 16 12 C -0.17 -2.21 5.95 -90.62 -0.54 -2.75 16 13 C -0.19 -1.92 9.18 -26.69 -0.24 -2.17 16 14 C -0.17 -1.83 10.25 -26.69 -0.27 -2.10 16 15 C 0.51 10.99 7.75 -10.99 -0.09 10.90 16 16 O -0.52 -13.97 16.08 -14.36 -0.23 -14.20 16 17 C 0.04 0.63 4.84 36.01 0.17 0.81 16 18 O -0.34 -5.79 9.51 -55.14 -0.52 -6.32 16 19 C 0.05 0.62 3.58 -25.16 -0.09 0.53 16 20 H 0.08 0.68 7.87 -51.93 -0.41 0.27 16 21 C -0.15 -1.57 6.90 -25.17 -0.17 -1.74 16 22 C 0.05 0.45 7.63 37.93 0.29 0.74 16 23 O -0.37 -5.07 11.67 -35.23 -0.41 -5.48 16 24 C 0.02 0.25 7.37 37.94 0.28 0.53 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 27 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 28 H 0.09 1.47 8.07 -51.93 -0.42 1.05 16 29 H 0.06 0.83 6.17 -51.93 -0.32 0.51 16 30 H 0.11 1.67 8.14 -51.93 -0.42 1.24 16 31 H 0.09 0.81 7.86 -51.93 -0.41 0.40 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.93 7.40 -51.93 -0.38 0.55 16 36 H 0.08 0.97 6.79 -51.93 -0.35 0.62 16 37 H 0.09 1.13 8.00 -51.93 -0.42 0.72 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.10 1.22 8.09 -51.93 -0.42 0.80 16 LS Contribution 349.80 15.07 5.27 5.27 Total: -1.00 -35.32 349.80 -8.60 -43.92 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -6.86 Total: -1.09 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -1.13 Total: -0.28 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.31 Total: -38.87 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -1.17 Total: -25.99 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.32 -8.60 -43.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331973145.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.765 kcal (2) G-P(sol) polarization free energy of solvation -35.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds