Wall clock time and date at job start Tue Mar 31 2020 05:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99589 * 2 1 4 4 H 1.48501 * 109.47251 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47052 * 300.00022 * 3 2 1 6 6 H 1.48494 * 109.47287 * 59.99929 * 3 2 1 7 7 C 1.37881 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99395 * 180.02562 * 7 2 1 9 9 C 1.50691 * 119.99898 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47201 * 180.02562 * 9 7 2 11 11 C 1.46494 * 120.00076 * 270.00358 * 10 9 7 12 12 C 1.53003 * 109.47163 * 269.99787 * 11 10 9 13 13 C 1.52994 * 117.50037 * 243.62489 * 12 11 10 14 14 C 1.52995 * 60.00069 * 252.50837 * 13 12 11 15 15 C 1.34780 * 119.99838 * 89.99855 * 10 9 7 16 16 O 1.21277 * 119.99899 * 0.02562 * 15 10 9 17 17 C 1.50695 * 119.99669 * 180.02562 * 15 10 9 18 18 O 1.42905 * 109.46940 * 180.02562 * 17 15 10 19 19 C 1.42900 * 113.99784 * 179.97438 * 18 17 15 20 20 H 1.08994 * 110.91192 * 32.13596 * 19 18 17 21 21 C 1.55457 * 110.92104 * 155.75231 * 19 18 17 22 22 C 1.54947 * 100.98961 * 152.22731 * 21 19 18 23 23 O 1.43650 * 105.13275 * 323.60678 * 22 21 19 24 24 C 1.43233 * 109.97542 * 24.42908 * 23 22 21 25 25 H 0.96993 * 120.00360 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47234 * 60.00324 * 9 7 2 27 27 H 1.09004 * 109.47390 * 300.00031 * 9 7 2 28 28 H 1.09000 * 109.47200 * 29.99138 * 11 10 9 29 29 H 1.08998 * 109.47437 * 149.99905 * 11 10 9 30 30 H 1.09003 * 115.55105 * 29.32596 * 12 11 10 31 31 H 1.09005 * 117.49926 * 359.97438 * 13 12 11 32 32 H 1.08996 * 117.50263 * 145.01760 * 13 12 11 33 33 H 1.09003 * 117.50034 * 252.51053 * 14 13 12 34 34 H 1.08993 * 117.50531 * 107.48600 * 14 13 12 35 35 H 1.08996 * 109.47185 * 60.00212 * 17 15 10 36 36 H 1.09006 * 109.47338 * 299.99864 * 17 15 10 37 37 H 1.08999 * 111.05650 * 34.31343 * 21 19 18 38 38 H 1.09001 * 111.18400 * 270.19525 * 21 19 18 39 39 H 1.08996 * 110.31348 * 204.69266 * 22 21 19 40 40 H 1.09000 * 110.30898 * 82.52016 * 22 21 19 41 41 H 1.09002 * 109.83312 * 117.80151 * 24 23 22 42 42 H 1.08996 * 109.82720 * 238.68562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1938 -0.0001 9 6 1.2513 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0005 11 6 2.6794 -4.1693 -1.2692 12 6 1.7488 -5.3006 -1.7110 13 6 2.3408 -6.7085 -1.7992 14 6 2.0092 -5.9366 -3.0779 15 6 2.6413 -4.1248 1.1667 16 8 2.2468 -3.6641 2.2170 17 6 3.6210 -5.2697 1.1667 18 8 3.9300 -5.6322 2.5140 19 6 4.8557 -6.7150 2.6268 20 1 5.5639 -6.7093 1.7983 21 6 5.6002 -6.6691 3.9907 22 6 5.9223 -8.1699 4.2021 23 8 4.7852 -8.8749 3.6790 24 6 4.1135 -8.0664 2.7059 25 1 -0.4850 0.8400 0.0004 26 1 0.6243 -2.5567 -0.8903 27 1 0.6249 -2.5571 0.8897 28 1 2.6870 -3.3876 -2.0289 29 1 3.6888 -4.5592 -1.1389 30 1 0.7118 -5.2097 -1.3875 31 1 3.3934 -6.8289 -1.5430 32 1 1.6934 -7.5443 -1.5337 33 1 1.1437 -6.2644 -3.6536 34 1 2.8435 -5.5490 -3.6625 35 1 4.5335 -4.9671 0.6531 36 1 3.1811 -6.1244 0.6527 37 1 4.9493 -6.2922 4.7797 38 1 6.5129 -6.0774 3.9216 39 1 6.0452 -8.3848 5.2636 40 1 6.8230 -8.4445 3.6530 41 1 4.1389 -8.5597 1.7343 42 1 3.0799 -7.9033 3.0108 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331973146.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:16 Heat of formation + Delta-G solvation = -96.622352 kcal Electronic energy + Delta-G solvation = -22837.866710 eV Core-core repulsion = 19398.290979 eV Total energy + Delta-G solvation = -3439.575731 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.89658 -39.14313 -37.36956 -36.76139 -34.41981 -32.57647 -31.60303 -29.29617 -28.47728 -27.16694 -25.71870 -22.89991 -22.44040 -22.37594 -21.64463 -20.74756 -18.67632 -17.47736 -17.09151 -16.52614 -16.25311 -15.83124 -15.52990 -15.04554 -14.94648 -14.77743 -14.27036 -14.14298 -13.53621 -13.22761 -13.15766 -12.54824 -12.49350 -12.29708 -11.98819 -11.69518 -11.66101 -11.51436 -11.45579 -11.24186 -10.90431 -10.87901 -10.64606 -10.39404 -10.12782 -9.92372 -9.77673 -9.62952 -9.60255 -8.88159 -8.44645 -7.72983 -6.05432 -4.10131 3.11953 3.29284 3.32558 3.37576 3.41777 3.69331 3.81927 4.14934 4.24417 4.44641 4.65883 4.71559 4.79311 4.91062 4.93961 4.95655 5.11917 5.15983 5.26016 5.30673 5.36842 5.42419 5.44599 5.47528 5.55060 5.61053 5.73023 5.78512 5.83393 5.91794 6.01960 6.10956 6.38369 6.71915 6.91299 7.14427 7.42073 7.51340 7.91058 8.21518 8.34488 8.88530 9.05303 9.55029 11.02784 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015792 B = 0.004482 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.656301 B = 6246.073558 C = 7559.421661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.898 3.102 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.247 3.753 10 N -0.593 5.593 11 C 0.140 3.860 12 C -0.167 4.167 13 C -0.188 4.188 14 C -0.174 4.174 15 C 0.509 3.491 16 O -0.519 6.519 17 C 0.040 3.960 18 O -0.342 6.342 19 C 0.053 3.947 20 H 0.078 0.922 21 C -0.153 4.153 22 C 0.052 3.948 23 O -0.381 6.381 24 C 0.027 3.973 25 H 0.263 0.737 26 H 0.035 0.965 27 H 0.044 0.956 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.568 -16.404 -1.818 19.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.566 4.566 8 H 0.076 0.924 9 C 0.129 3.871 10 N -0.326 5.326 11 C 0.016 3.984 12 C -0.186 4.186 13 C -0.225 4.225 14 C -0.212 4.212 15 C 0.294 3.706 16 O -0.394 6.394 17 C -0.040 4.040 18 O -0.260 6.260 19 C -0.006 4.006 20 H 0.096 0.904 21 C -0.191 4.191 22 C -0.024 4.024 23 O -0.300 6.300 24 C -0.050 4.050 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.109 0.891 29 H 0.083 0.917 30 H 0.128 0.872 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.037 -16.114 -1.017 19.011 hybrid contribution 0.605 1.003 -0.522 1.282 sum 10.642 -15.111 -1.538 18.546 Atomic orbital electron populations 1.69937 1.05989 1.26937 1.50430 1.24931 0.94872 0.99216 0.95035 0.86445 0.79985 0.83399 0.77598 1.19820 1.20968 1.20852 1.21463 0.93394 0.90646 1.51075 0.92397 1.19315 0.87355 0.81896 0.98570 1.48136 1.46045 1.34948 1.03486 1.21049 0.94825 0.94849 0.87682 1.22973 1.01621 0.93723 1.00300 1.23059 1.01288 0.95398 1.02767 1.22891 1.03416 1.04177 0.90672 1.19844 0.82510 0.83624 0.84653 1.90705 1.57203 1.60656 1.30803 1.22528 0.98880 0.97901 0.84652 1.88114 1.62676 1.50346 1.24844 1.23712 0.91083 0.87101 0.98686 0.90389 1.23337 1.01344 0.97082 0.97289 1.23344 0.89233 0.90033 0.99818 1.88416 1.42471 1.41331 1.57808 1.23696 0.97924 0.90779 0.92599 0.92746 0.94711 0.93788 0.89129 0.91720 0.87173 0.89104 0.89033 0.88888 0.88703 0.90926 0.90534 0.88831 0.89186 0.89256 0.91988 0.91157 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.25 6.39 5.16 -5.20 -0.03 6.37 16 10 N -0.59 -12.30 2.46 -175.07 -0.43 -12.73 16 11 C 0.14 2.17 5.49 -4.04 -0.02 2.15 16 12 C -0.17 -2.21 5.95 -90.62 -0.54 -2.75 16 13 C -0.19 -1.94 9.18 -26.74 -0.25 -2.18 16 14 C -0.17 -1.83 10.25 -26.74 -0.27 -2.10 16 15 C 0.51 10.79 7.75 -10.99 -0.09 10.70 16 16 O -0.52 -13.71 16.08 -14.35 -0.23 -13.94 16 17 C 0.04 0.62 4.85 36.00 0.17 0.79 16 18 O -0.34 -5.55 9.62 -55.14 -0.53 -6.08 16 19 C 0.05 0.62 3.45 -24.70 -0.09 0.54 16 20 H 0.08 0.74 7.90 -51.93 -0.41 0.33 16 21 C -0.15 -1.57 6.89 -24.40 -0.17 -1.74 16 22 C 0.05 0.47 7.78 38.18 0.30 0.77 16 23 O -0.38 -4.61 11.36 -35.23 -0.40 -5.01 16 24 C 0.03 0.31 7.57 37.88 0.29 0.60 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 27 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 28 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 29 H 0.06 0.82 6.17 -51.93 -0.32 0.50 16 30 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 31 H 0.09 0.81 7.87 -51.93 -0.41 0.41 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.94 7.37 -51.93 -0.38 0.56 16 36 H 0.08 0.98 6.84 -51.93 -0.36 0.62 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 1.05 8.05 -51.93 -0.42 0.63 16 LS Contribution 350.00 15.07 5.27 5.27 Total: -1.00 -34.21 350.00 -8.58 -42.79 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -6.87 Total: -0.98 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.11 Total: -0.37 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.31 Total: -38.47 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -1.16 Total: -25.03 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.21 -8.58 -42.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331973146.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.831 kcal (2) G-P(sol) polarization free energy of solvation -34.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds