Wall clock time and date at job start Tue Mar 31 2020 05:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 119.99731 * 2 1 4 4 H 1.48497 * 109.46965 * 0.02562 * 3 2 1 5 5 H 1.48494 * 109.46847 * 239.99762 * 3 2 1 6 6 H 1.48505 * 109.46750 * 119.99868 * 3 2 1 7 7 C 1.37875 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99832 * 342.32390 * 7 2 1 9 9 C 1.50704 * 120.00020 * 162.33050 * 7 2 1 10 10 C 1.53039 * 109.45847 * 294.51539 * 9 7 2 11 11 C 1.53186 * 109.31229 * 178.61146 * 10 9 7 12 12 N 1.46929 * 108.77663 * 54.63773 * 11 10 9 13 13 C 1.34774 * 120.63356 * 126.36912 * 12 11 10 14 14 O 1.21282 * 119.99787 * 180.02562 * 13 12 11 15 15 C 1.50704 * 120.00058 * 0.02562 * 13 12 11 16 16 O 1.42900 * 109.46878 * 180.02562 * 15 13 12 17 17 C 1.42897 * 113.99676 * 180.02562 * 16 15 13 18 18 H 1.08997 * 110.45790 * 29.29659 * 17 16 15 19 19 C 1.54508 * 110.51174 * 151.90553 * 17 16 15 20 20 C 1.54480 * 104.06478 * 118.64380 * 19 17 16 21 21 O 1.44423 * 104.80313 * 23.97547 * 20 19 17 22 22 C 1.44637 * 105.37279 * 319.57057 * 21 20 19 23 23 C 1.46932 * 118.73565 * 306.39146 * 12 11 10 24 24 C 1.53040 * 109.46142 * 174.44549 * 9 7 2 25 25 H 0.97007 * 119.99935 * 174.64305 * 1 2 3 26 26 H 1.09004 * 109.46238 * 54.47232 * 9 7 2 27 27 H 1.08992 * 109.49718 * 298.56760 * 10 9 7 28 28 H 1.09004 * 109.49786 * 58.66117 * 10 9 7 29 29 H 1.09002 * 109.59115 * 294.84749 * 11 10 9 30 30 H 1.09004 * 109.58753 * 174.41842 * 11 10 9 31 31 H 1.09000 * 109.46938 * 300.00174 * 15 13 12 32 32 H 1.09000 * 109.46834 * 60.00109 * 15 13 12 33 33 H 1.08999 * 110.50963 * 237.28835 * 19 17 16 34 34 H 1.08995 * 110.51004 * 359.97438 * 19 17 16 35 35 H 1.09004 * 110.37139 * 142.80747 * 20 19 17 36 36 H 1.08997 * 110.37026 * 265.03347 * 20 19 17 37 37 H 1.09003 * 110.33510 * 281.59388 * 22 21 20 38 38 H 1.08997 * 110.51542 * 159.18520 * 22 21 20 39 39 H 1.09000 * 109.58423 * 293.81758 * 23 12 11 40 40 H 1.08996 * 109.58666 * 173.39907 * 23 12 11 41 41 H 1.08998 * 109.49474 * 301.33555 * 24 9 7 42 42 H 1.08998 * 109.49454 * 61.40267 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6965 -1.2124 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 1.5027 -2.1071 0.2849 9 6 3.4582 -1.2250 -0.3956 10 6 3.5926 -0.8436 -1.8716 11 6 5.0740 -0.8424 -2.2616 12 7 5.6539 -2.1486 -1.9207 13 6 6.3120 -2.8711 -2.8488 14 8 6.7857 -3.9482 -2.5549 15 6 6.4591 -2.3407 -4.2517 16 8 7.1888 -3.2811 -5.0424 17 6 7.3856 -2.8723 -6.3974 18 1 7.4228 -1.7851 -6.4657 19 6 8.6790 -3.4953 -6.9685 20 6 8.1886 -4.3620 -8.1494 21 8 6.9279 -3.7750 -8.5393 22 6 6.2646 -3.4332 -7.3003 23 6 5.5023 -2.6525 -0.5488 24 6 4.0161 -2.6333 -0.1780 25 1 -0.4850 -0.8364 -0.0784 26 1 4.0162 -0.5150 0.2149 27 1 3.0555 -1.5672 -2.4847 28 1 3.1738 0.1502 -2.0302 29 1 5.5954 -0.0571 -1.7143 30 1 5.1695 -0.6688 -3.3335 31 1 5.4719 -2.1883 -4.6879 32 1 6.9958 -1.3923 -4.2270 33 1 9.3547 -2.7161 -7.3213 34 1 9.1686 -4.1148 -6.2171 35 1 8.8996 -4.3165 -8.9744 36 1 8.0456 -5.3939 -7.8290 37 1 5.8232 -4.3219 -6.8493 38 1 5.5009 -2.6748 -7.4725 39 1 6.0586 -2.0147 0.1382 40 1 5.8804 -3.6731 -0.4905 41 1 3.8987 -2.9133 0.8689 42 1 3.4747 -3.3402 -0.8066 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342106313.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:10 Heat of formation + Delta-G solvation = -128.902993 kcal Electronic energy + Delta-G solvation = -22833.763942 eV Core-core repulsion = 19392.788417 eV Total energy + Delta-G solvation = -3440.975525 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.21036 -39.60053 -37.51602 -36.67876 -33.65876 -31.92443 -31.50006 -30.70002 -29.16512 -27.87052 -25.92370 -23.28551 -22.67232 -22.49818 -21.47998 -20.09391 -18.58626 -17.70310 -17.54400 -17.09579 -16.35431 -16.25446 -15.75860 -15.36103 -14.93900 -14.37506 -14.13495 -13.80249 -13.59547 -13.44618 -13.22746 -12.83182 -12.68468 -12.58995 -12.44586 -12.03284 -11.89473 -11.65754 -11.55876 -11.07097 -10.87378 -10.66709 -10.38232 -10.23322 -10.19665 -9.82448 -9.79612 -9.54873 -9.47340 -8.89275 -8.41728 -8.24711 -6.48874 -4.12659 2.69208 2.74894 3.27042 3.36764 3.54295 3.54694 3.83476 4.20487 4.41394 4.43645 4.57753 4.60926 4.87580 4.91084 4.97043 5.05280 5.12802 5.27153 5.35496 5.38369 5.43225 5.53923 5.55336 5.59914 5.60631 5.76399 5.82394 5.92764 6.17783 6.25131 6.33958 6.57200 6.64417 6.73509 6.78694 6.91976 7.18095 7.42006 7.61497 8.07218 8.31783 8.32766 8.84044 9.55537 10.87658 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.026129 B = 0.003609 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.351131 B = 7756.603816 C = 8205.053422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.031 3.969 3 Si 1.043 2.957 4 H -0.287 1.287 5 H -0.274 1.274 6 H -0.284 1.284 7 C -0.599 4.599 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.138 4.138 11 C 0.099 3.901 12 N -0.600 5.600 13 C 0.514 3.486 14 O -0.533 6.533 15 C 0.043 3.957 16 O -0.349 6.349 17 C 0.053 3.947 18 H 0.079 0.921 19 C -0.154 4.154 20 C 0.045 3.955 21 O -0.373 6.373 22 C 0.022 3.978 23 C 0.111 3.889 24 C -0.114 4.114 25 H 0.268 0.732 26 H 0.022 0.978 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.093 -2.056 -12.847 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.174 4.174 3 Si 0.872 3.128 4 H -0.213 1.213 5 H -0.201 1.201 6 H -0.210 1.210 7 C -0.636 4.636 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.177 4.177 11 C -0.023 4.023 12 N -0.335 5.335 13 C 0.301 3.699 14 O -0.410 6.410 15 C -0.037 4.037 16 O -0.267 6.267 17 C -0.005 4.005 18 H 0.097 0.903 19 C -0.192 4.192 20 C -0.031 4.031 21 O -0.292 6.292 22 C -0.056 4.056 23 C -0.011 4.011 24 C -0.152 4.152 25 H 0.078 0.922 26 H 0.040 0.960 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.115 0.885 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.120 -1.138 -12.756 20.587 hybrid contribution -0.024 -1.327 0.072 1.329 sum 16.096 -2.465 -12.684 20.641 Atomic orbital electron populations 1.70827 1.07226 1.30522 1.45392 1.25783 0.96107 1.02435 0.93107 0.84095 0.75453 0.76177 0.77117 1.21286 1.20110 1.21018 1.21988 0.94594 0.96450 1.50581 0.92669 1.18953 0.97525 0.92214 0.91098 1.22499 0.91620 1.02598 1.00945 1.22022 0.96907 0.83679 0.99719 1.48108 1.53991 1.20294 1.11123 1.20060 0.78721 0.85010 0.86130 1.90686 1.48253 1.21300 1.80769 1.22374 0.97659 0.92827 0.90819 1.88078 1.74963 1.43595 1.20112 1.23568 0.95145 0.99288 0.82534 0.90269 1.23010 0.96909 1.00760 0.98503 1.23417 0.85943 0.96818 0.96951 1.89164 1.31690 1.81018 1.27309 1.24038 0.95661 1.00971 0.84893 1.21783 0.98589 0.99992 0.80746 1.21847 0.92393 1.00058 1.00894 0.92183 0.95961 0.92305 0.90736 0.91467 0.91176 0.90037 0.90170 0.89670 0.88757 0.88801 0.91787 0.90788 0.88521 0.91839 0.89887 0.91549 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.99 13.69 55.43 0.76 -26.23 16 2 C 0.03 0.84 5.32 -17.82 -0.09 0.75 16 3 Si 1.04 23.56 26.35 -169.99 -4.48 19.09 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.27 -5.45 5.63 56.52 0.32 -5.13 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.60 -15.99 8.82 -34.44 -0.30 -16.30 16 8 H 0.06 1.62 7.99 -52.49 -0.42 1.20 16 9 C 0.02 0.46 1.65 -91.73 -0.15 0.31 16 10 C -0.14 -2.65 5.05 -26.62 -0.13 -2.78 16 11 C 0.10 1.48 6.34 -3.71 -0.02 1.45 16 12 N -0.60 -9.72 2.97 -172.77 -0.51 -10.23 16 13 C 0.51 8.41 7.78 -10.98 -0.09 8.33 16 14 O -0.53 -10.67 15.91 -14.35 -0.23 -10.90 16 15 C 0.04 0.53 4.62 36.01 0.17 0.69 16 16 O -0.35 -4.62 9.51 -55.14 -0.52 -5.14 16 17 C 0.05 0.53 3.59 -25.16 -0.09 0.44 16 18 H 0.08 0.64 7.84 -51.93 -0.41 0.23 16 19 C -0.15 -1.30 6.90 -25.16 -0.17 -1.48 16 20 C 0.05 0.39 7.64 37.93 0.29 0.67 16 21 O -0.37 -4.11 11.65 -35.23 -0.41 -4.52 16 22 C 0.02 0.22 7.40 37.94 0.28 0.50 16 23 C 0.11 1.87 6.43 -3.71 -0.02 1.84 16 24 C -0.11 -2.21 5.30 -26.61 -0.14 -2.35 16 25 H 0.27 8.00 8.73 -40.82 -0.36 7.65 16 26 H 0.02 0.49 6.80 -51.93 -0.35 0.13 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.07 1.48 4.81 -51.93 -0.25 1.23 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.82 5.93 -51.93 -0.31 0.51 16 31 H 0.08 0.87 7.69 -51.93 -0.40 0.47 16 32 H 0.08 0.78 7.91 -51.93 -0.41 0.37 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.85 8.00 -51.93 -0.42 0.44 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 38 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.08 1.43 7.00 -51.93 -0.36 1.06 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 330.82 15.07 4.99 4.99 Total: -1.00 -32.41 330.82 -7.68 -40.09 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.79 Total: 0.77 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -0.49 Total: -7.92 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.25 Total: -36.46 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -1.16 Total: -20.56 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -4.48 Total: 19.09 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.41 -7.68 -40.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342106313.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.813 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds