Wall clock time and date at job start Tue Mar 31 2020 05:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00106 * 2 1 4 4 H 1.48506 * 109.47334 * 269.99902 * 3 2 1 5 5 H 1.48499 * 109.47347 * 29.99998 * 3 2 1 6 6 H 1.48501 * 109.47189 * 150.00291 * 3 2 1 7 7 C 1.37877 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00180 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00082 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47164 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47164 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99669 * 0.02562 * 11 10 9 13 13 O 1.34231 * 120.00118 * 179.97438 * 11 10 9 14 14 C 1.45192 * 117.00096 * 179.97438 * 13 11 10 15 15 H 1.09000 * 112.91030 * 341.25926 * 14 13 11 16 16 C 1.53780 * 113.61405 * 112.50902 * 14 13 11 17 17 C 1.53776 * 87.08401 * 139.98460 * 16 14 13 18 18 H 1.08996 * 113.61827 * 89.11325 * 17 16 14 19 19 N 1.46896 * 113.61385 * 220.02269 * 17 16 14 20 20 C 1.47022 * 111.00046 * 288.93978 * 19 17 16 21 21 C 1.53095 * 109.25820 * 177.60697 * 20 19 17 22 22 O 1.43017 * 109.25951 * 56.85006 * 21 20 19 23 23 C 1.43007 * 113.73908 * 301.33056 * 22 21 20 24 24 C 1.47020 * 111.00393 * 165.30663 * 19 17 16 25 25 C 1.53785 * 113.61557 * 210.00486 * 14 13 11 26 26 H 0.97008 * 120.00160 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47146 * 59.99609 * 9 7 2 28 28 H 1.08996 * 109.47234 * 300.00092 * 9 7 2 29 29 H 1.08995 * 109.47450 * 59.99903 * 10 9 7 30 30 H 1.09003 * 109.46823 * 299.99879 * 10 9 7 31 31 H 1.08999 * 113.61254 * 25.42823 * 16 14 13 32 32 H 1.09006 * 113.61462 * 254.52829 * 16 14 13 33 33 H 1.08999 * 109.50368 * 297.54403 * 20 19 17 34 34 H 1.09000 * 109.50017 * 57.67487 * 20 19 17 35 35 H 1.09003 * 109.50780 * 296.91097 * 21 20 19 36 36 H 1.08998 * 109.54086 * 176.80663 * 21 20 19 37 37 H 1.09000 * 109.50486 * 298.73145 * 23 22 21 38 38 H 1.08995 * 109.54460 * 178.62659 * 23 22 21 39 39 H 1.08994 * 109.50334 * 302.32867 * 24 19 17 40 40 H 1.08999 * 109.50182 * 62.45264 * 24 19 17 41 41 H 1.08994 * 113.61092 * 105.47403 * 25 14 13 42 42 H 1.08999 * 113.61203 * 334.56877 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5285 -2.6366 -0.0022 12 8 6.1325 -1.5903 -0.0026 13 8 6.1996 -3.7991 -0.0018 14 6 7.6496 -3.7232 -0.0036 15 1 8.0232 -2.7518 -0.3277 16 6 8.2945 -4.2283 1.2978 17 6 9.3752 -4.8779 0.4177 18 1 10.2205 -4.2223 0.2088 19 7 9.7857 -6.2112 0.8778 20 6 10.5692 -6.1223 2.1187 21 6 10.9243 -7.5336 2.5938 22 8 11.6310 -8.2172 1.5552 23 6 10.8970 -8.3225 0.3324 24 6 10.5414 -6.9193 -0.1658 25 6 8.3278 -4.9102 -0.7078 26 1 -0.4851 0.8401 -0.0004 27 1 3.8752 -0.6804 0.8888 28 1 3.8745 -0.6801 -0.8911 29 1 3.6578 -3.1507 -0.8907 30 1 3.6584 -3.1502 0.8893 31 1 7.6804 -4.9485 1.8385 32 1 8.6731 -3.4298 1.9361 33 1 11.4841 -5.5601 1.9319 34 1 9.9810 -5.6175 2.8850 35 1 10.0106 -8.0783 2.8319 36 1 11.5530 -7.4719 3.4821 37 1 9.9825 -8.8902 0.5046 38 1 11.5054 -8.8309 -0.4155 39 1 9.9331 -6.9961 -1.0669 40 1 11.4559 -6.3697 -0.3890 41 1 8.7331 -4.6623 -1.6887 42 1 7.7228 -5.8169 -0.7155 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343572641.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:02 Heat of formation + Delta-G solvation = -110.467698 kcal Electronic energy + Delta-G solvation = -22052.586775 eV Core-core repulsion = 18612.410665 eV Total energy + Delta-G solvation = -3440.176111 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.67013 -39.81681 -38.30202 -35.94868 -34.25108 -33.61597 -31.61569 -31.40490 -27.77909 -26.56036 -26.24253 -24.03145 -23.82488 -21.75390 -20.80729 -19.95303 -19.69763 -17.80706 -17.19236 -16.49540 -16.47734 -16.01215 -15.85288 -15.41812 -15.35027 -15.30120 -14.48560 -14.23955 -14.05207 -13.50667 -12.88270 -12.86613 -12.69561 -12.54021 -12.27510 -11.95151 -11.80597 -11.77749 -11.51410 -11.24497 -11.03955 -10.91473 -10.80180 -10.31503 -10.21323 -10.10873 -10.04432 -9.91461 -9.68145 -9.26331 -8.83126 -8.56409 -6.07833 -4.07641 2.67433 2.93916 3.33435 3.40185 3.41282 3.49507 3.53997 4.04855 4.28316 4.45499 4.50811 4.51709 4.57810 4.66448 4.75286 4.86599 4.88209 5.09685 5.13993 5.23464 5.24813 5.26888 5.38267 5.46557 5.49504 5.53857 5.55876 5.68095 5.80574 5.91389 5.99710 6.06748 6.50646 6.51461 6.63363 6.73707 6.85118 7.23333 7.30626 7.70348 8.21649 8.46604 8.94642 9.53977 11.04764 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.047732 B = 0.002568 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.469574 B =10899.464895 C =10981.761342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.096 4.096 11 C 0.457 3.543 12 O -0.513 6.513 13 O -0.347 6.347 14 C 0.058 3.942 15 H 0.109 0.891 16 C -0.134 4.134 17 C 0.055 3.945 18 H 0.071 0.929 19 N -0.521 5.521 20 C 0.017 3.983 21 C 0.064 3.936 22 O -0.388 6.388 23 C 0.063 3.937 24 C 0.016 3.984 25 C -0.120 4.120 26 H 0.264 0.736 27 H 0.025 0.975 28 H 0.021 0.979 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.042 0.958 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.042 0.958 41 H 0.075 0.925 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.610 -15.713 1.710 28.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.565 4.565 8 H 0.094 0.906 9 C -0.039 4.039 10 C -0.134 4.134 11 C 0.301 3.699 12 O -0.401 6.401 13 O -0.265 6.265 14 C 0.002 3.998 15 H 0.127 0.873 16 C -0.172 4.172 17 C -0.053 4.053 18 H 0.089 0.911 19 N -0.247 5.247 20 C -0.111 4.111 21 C -0.013 4.013 22 O -0.306 6.306 23 C -0.014 4.014 24 C -0.112 4.112 25 C -0.157 4.157 26 H 0.074 0.926 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.116 0.884 37 H 0.079 0.921 38 H 0.116 0.884 39 H 0.107 0.893 40 H 0.060 0.940 41 H 0.093 0.907 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 23.428 -15.632 1.838 28.224 hybrid contribution 0.924 1.677 -0.253 1.931 sum 24.352 -13.955 1.585 28.112 Atomic orbital electron populations 1.69904 1.06268 1.27065 1.50645 1.24958 0.94728 0.99200 0.94251 0.86801 0.80571 0.83428 0.78769 1.20179 1.21320 1.18618 1.21037 0.88857 0.94793 1.51777 0.90640 1.19477 0.96901 0.89692 0.97874 1.21542 0.83541 1.03468 1.04836 1.24767 0.92821 0.81225 0.71063 1.90595 1.70660 1.33091 1.45707 1.86678 1.20214 1.35593 1.83986 1.24064 0.78124 0.99869 0.97698 0.87303 1.23455 0.96624 1.00299 0.96846 1.22844 0.95676 0.89374 0.97447 0.91126 1.62399 1.40853 1.17385 1.04047 1.22770 0.96831 0.98218 0.93320 1.22675 0.97268 0.91056 0.90341 1.87981 1.43172 1.77456 1.22011 1.22670 0.96856 0.95337 0.86496 1.22772 0.97145 0.95652 0.95592 1.23267 0.96087 0.99191 0.97191 0.92599 0.95646 0.96094 0.88348 0.88305 0.87878 0.90846 0.93944 0.89316 0.92068 0.88423 0.92082 0.88439 0.89301 0.93965 0.90673 0.87747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16 7 C -0.53 -14.87 9.66 -34.44 -0.33 -15.21 16 8 H 0.08 2.23 7.99 -52.48 -0.42 1.81 16 9 C 0.00 -0.05 3.33 -27.88 -0.09 -0.14 16 10 C -0.10 -1.88 5.75 -27.88 -0.16 -2.04 16 11 C 0.46 8.52 7.96 36.01 0.29 8.80 16 12 O -0.51 -10.90 15.16 -18.75 -0.28 -11.18 16 13 O -0.35 -5.46 10.24 -39.26 -0.40 -5.86 16 14 C 0.06 0.74 4.25 -25.92 -0.11 0.63 16 15 H 0.11 1.48 7.08 -51.93 -0.37 1.11 16 16 C -0.13 -1.42 7.02 -25.92 -0.18 -1.60 16 17 C 0.05 0.49 3.17 -66.90 -0.21 0.28 16 18 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 19 N -0.52 -4.47 4.67 -225.36 -1.05 -5.53 16 20 C 0.02 0.13 5.57 -3.71 -0.02 0.11 16 21 C 0.06 0.47 7.01 37.21 0.26 0.73 16 22 O -0.39 -3.53 10.83 -35.23 -0.38 -3.91 16 23 C 0.06 0.46 7.01 37.21 0.26 0.72 16 24 C 0.02 0.12 5.55 -3.71 -0.02 0.10 16 25 C -0.12 -1.16 6.86 -25.91 -0.18 -1.34 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.03 0.64 7.16 -51.93 -0.37 0.27 16 28 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 29 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 30 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 31 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.64 7.62 -51.93 -0.40 0.25 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.59 7.51 -51.93 -0.39 0.20 16 40 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 340.70 15.07 5.13 5.13 Total: -1.00 -32.64 340.70 -8.48 -41.12 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -7.00 Total: -3.44 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -0.60 Total: -7.00 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: -0.28 Total: -32.36 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -1.07 Total: -20.95 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.64 -8.48 -41.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343572641.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.351 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds