Wall clock time and date at job start Tue Mar 31 2020 05:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99515 * 2 1 4 4 H 1.48503 * 109.46663 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47114 * 299.99656 * 3 2 1 6 6 H 1.48497 * 109.46987 * 59.99855 * 3 2 1 7 7 C 1.37875 * 120.00466 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00171 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99881 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.77863 * 298.21700 * 9 7 2 11 11 C 1.55157 * 110.71903 * 61.45034 * 9 7 2 12 12 C 1.54918 * 101.58155 * 153.86325 * 11 9 7 13 13 N 1.47425 * 104.82827 * 322.99497 * 12 11 9 14 14 C 1.34778 * 125.64271 * 204.07868 * 13 12 11 15 15 O 1.21282 * 119.99788 * 180.02562 * 14 13 12 16 16 C 1.50703 * 120.00112 * 0.05219 * 14 13 12 17 17 C 1.52999 * 109.47396 * 299.99986 * 16 14 13 18 18 C 1.52995 * 109.47272 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.47030 * 60.00213 * 18 17 16 20 20 O 1.42897 * 109.47053 * 180.02562 * 19 18 17 21 21 C 1.53008 * 109.47007 * 299.99936 * 19 18 17 22 22 C 1.52995 * 109.47173 * 60.00151 * 21 19 18 23 23 C 1.47015 * 108.70882 * 24.12597 * 13 12 11 24 24 H 0.96994 * 120.00520 * 0.02562 * 1 2 3 25 25 H 0.96697 * 114.00297 * 61.78216 * 10 9 7 26 26 H 1.09001 * 111.00846 * 271.94033 * 11 9 7 27 27 H 1.09000 * 111.00346 * 35.79565 * 11 9 7 28 28 H 1.08999 * 110.35942 * 81.82689 * 12 11 9 29 29 H 1.08996 * 110.36556 * 204.15522 * 12 11 9 30 30 H 1.09003 * 109.46764 * 60.00206 * 16 14 13 31 31 H 1.09002 * 109.46609 * 300.00432 * 17 16 14 32 32 H 1.09000 * 109.46647 * 59.99531 * 17 16 14 33 33 H 1.09003 * 109.46894 * 300.00223 * 18 17 16 34 34 H 1.09000 * 109.47382 * 179.97438 * 18 17 16 35 35 H 1.08994 * 109.47272 * 59.99630 * 19 18 17 36 36 H 0.96696 * 114.00140 * 299.99528 * 20 19 18 37 37 H 1.08994 * 109.46855 * 299.99950 * 21 19 18 38 38 H 1.09000 * 109.46734 * 180.02562 * 21 19 18 39 39 H 1.09000 * 109.47382 * 180.02562 * 22 21 19 40 40 H 1.08998 * 109.47290 * 59.99618 * 22 21 19 41 41 H 1.09000 * 109.88350 * 239.52260 * 23 13 12 42 42 H 1.08998 * 109.88602 * 118.35926 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 0.4502 -2.6221 1.1775 11 6 0.3766 -2.6281 -1.2745 12 6 0.2722 -4.1663 -1.4259 13 7 1.5934 -4.6763 -1.0160 14 6 2.1335 -5.8517 -1.3943 15 8 3.2327 -6.1709 -0.9934 16 6 1.3719 -6.7690 -2.3161 17 6 0.0469 -7.1648 -1.6613 18 6 -0.7265 -8.0956 -2.5974 19 6 0.1039 -9.3518 -2.8681 20 8 -0.6183 -10.2208 -3.7428 21 6 1.4289 -8.9559 -3.5229 22 6 2.2024 -8.0252 -2.5868 23 6 2.2236 -3.6909 -0.1253 24 1 -0.4850 0.8399 -0.0004 25 1 -0.2296 -1.9399 1.2637 26 1 -0.6065 -2.1830 -1.1207 27 1 0.8745 -2.1837 -2.1364 28 1 -0.5059 -4.5598 -0.7718 29 1 0.0679 -4.4324 -2.4629 30 1 1.1731 -6.2555 -3.2568 31 1 0.2458 -7.6782 -0.7205 32 1 -0.5448 -6.2699 -1.4688 33 1 -0.9253 -7.5817 -3.5379 34 1 -1.6702 -8.3780 -2.1307 35 1 0.3027 -9.8655 -1.9276 36 1 -1.4707 -10.5126 -3.3917 37 1 1.2301 -8.4421 -4.4634 38 1 2.0203 -9.8509 -3.7161 39 1 3.1461 -7.7428 -3.0535 40 1 2.4011 -8.5389 -1.6463 41 1 3.1681 -3.3551 -0.5532 42 1 2.3954 -4.1343 0.8555 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349456661.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:50 Heat of formation + Delta-G solvation = -154.708099 kcal Electronic energy + Delta-G solvation = -23444.188224 eV Core-core repulsion = 20002.093705 eV Total energy + Delta-G solvation = -3442.094518 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.17712 -38.53406 -37.26783 -35.44691 -34.37643 -32.25404 -31.04715 -30.32178 -29.33004 -28.19859 -25.27070 -23.41180 -22.82588 -21.90790 -20.22157 -19.69992 -18.75965 -17.40886 -17.28184 -16.55616 -15.85705 -15.17570 -15.08598 -14.87645 -14.64153 -14.28988 -13.82334 -13.55596 -13.25146 -13.05051 -12.51988 -12.42582 -12.22293 -12.11385 -11.82205 -11.56475 -11.39224 -11.36894 -11.35208 -11.15020 -10.91844 -10.78052 -10.64097 -10.47981 -10.31119 -10.15308 -9.90655 -9.44532 -9.24490 -8.70734 -8.26176 -8.02718 -6.32089 -4.39463 3.03788 3.16798 3.26033 3.30735 3.50605 3.98403 4.24586 4.52236 4.56414 4.75066 4.95612 4.98986 5.06806 5.10743 5.28074 5.29861 5.35352 5.49759 5.63090 5.70292 5.77614 5.84115 5.86017 5.88900 5.97459 6.00174 6.05906 6.15453 6.27594 6.31228 6.42688 6.67044 6.87192 6.94128 7.25806 7.31322 7.43366 7.69990 7.99026 8.10250 8.60706 8.64745 9.26638 9.35565 10.75471 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.035740 B = 0.003854 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.240006 B = 7263.516096 C = 7599.933438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.902 3.098 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.534 4.534 8 H 0.065 0.935 9 C 0.247 3.753 10 O -0.585 6.585 11 C -0.135 4.135 12 C 0.095 3.905 13 N -0.607 5.607 14 C 0.525 3.475 15 O -0.555 6.555 16 C -0.103 4.103 17 C -0.117 4.117 18 C -0.147 4.147 19 C 0.102 3.898 20 O -0.571 6.571 21 C -0.111 4.111 22 C -0.095 4.095 23 C 0.122 3.878 24 H 0.267 0.733 25 H 0.382 0.618 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.376 0.624 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.493 -13.254 -6.116 15.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.207 3.793 10 O -0.394 6.394 11 C -0.174 4.174 12 C -0.028 4.028 13 N -0.339 5.339 14 C 0.313 3.687 15 O -0.434 6.434 16 C -0.124 4.124 17 C -0.155 4.155 18 C -0.185 4.185 19 C 0.044 3.956 20 O -0.376 6.376 21 C -0.149 4.149 22 C -0.133 4.133 23 C 0.000 4.000 24 H 0.077 0.923 25 H 0.232 0.768 26 H 0.106 0.894 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.223 0.777 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.106 -13.784 -6.195 15.428 hybrid contribution -0.572 1.497 0.237 1.620 sum -3.678 -12.287 -5.958 14.142 Atomic orbital electron populations 1.69701 1.05943 1.27541 1.50360 1.24982 0.95030 0.99526 0.93455 0.86368 0.80225 0.82729 0.77717 1.19577 1.20820 1.20747 1.21558 0.93739 0.90208 1.51748 0.91725 1.19466 0.86955 0.90719 0.82207 1.86134 1.51661 1.56532 1.45073 1.23319 1.02884 0.90221 1.00984 1.22584 0.84454 0.97492 0.98260 1.48651 1.19298 1.18179 1.47778 1.20179 0.86096 0.80796 0.81642 1.90654 1.20983 1.74346 1.57444 1.21301 0.95987 0.96099 0.99043 1.21627 0.94811 1.00433 0.98580 1.22245 0.98715 0.96952 1.00596 1.21892 0.91999 0.89294 0.92458 1.86506 1.36132 1.67449 1.47527 1.21499 0.94354 0.99776 0.99222 1.21295 0.98020 0.93824 1.00157 1.22065 0.96714 0.88510 0.92682 0.92276 0.76810 0.89365 0.91459 0.91784 0.92107 0.88718 0.91347 0.89972 0.90870 0.91449 0.92663 0.77730 0.91174 0.91066 0.90507 0.91012 0.91044 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.56 10.69 55.43 0.59 -21.97 16 2 C 0.07 1.84 5.28 -17.82 -0.09 1.74 16 3 Si 0.90 20.05 29.54 -169.99 -5.02 15.02 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.53 -13.82 8.22 -34.44 -0.28 -14.10 16 8 H 0.06 1.69 7.57 -52.48 -0.40 1.30 16 9 C 0.25 5.83 0.84 -89.94 -0.08 5.75 16 10 O -0.59 -14.35 13.07 -35.23 -0.46 -14.81 16 11 C -0.14 -2.83 5.47 -24.58 -0.13 -2.96 16 12 C 0.09 1.64 5.13 -2.52 -0.01 1.62 16 13 N -0.61 -11.69 3.32 -170.52 -0.57 -12.25 16 14 C 0.52 9.57 7.22 -10.98 -0.08 9.49 16 15 O -0.56 -11.93 16.31 5.56 0.09 -11.84 16 16 C -0.10 -1.38 1.87 -91.77 -0.17 -1.55 16 17 C -0.12 -1.36 5.01 -26.73 -0.13 -1.49 16 18 C -0.15 -1.38 5.54 -26.73 -0.15 -1.53 16 19 C 0.10 0.99 3.47 -26.73 -0.09 0.90 16 20 O -0.57 -5.51 13.32 -35.23 -0.47 -5.97 16 21 C -0.11 -1.17 5.57 -26.73 -0.15 -1.32 16 22 C -0.10 -1.17 4.49 -26.73 -0.12 -1.29 16 23 C 0.12 2.73 6.22 -3.07 -0.02 2.71 16 24 H 0.27 6.45 8.31 -40.82 -0.34 6.12 16 25 H 0.38 9.33 7.49 45.56 0.34 9.67 16 26 H 0.09 1.91 7.54 -51.93 -0.39 1.52 16 27 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 28 H 0.06 1.06 7.07 -51.93 -0.37 0.70 16 29 H 0.06 0.88 7.36 -51.93 -0.38 0.50 16 30 H 0.09 1.18 7.85 -51.93 -0.41 0.77 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.99 4.99 -51.93 -0.26 0.73 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.38 2.05 9.08 45.56 0.41 2.47 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 40 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 41 H 0.07 1.64 7.66 -51.93 -0.40 1.24 16 42 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 LS Contribution 327.99 15.07 4.94 4.94 Total: -1.00 -29.02 327.99 -7.60 -36.62 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -5.20 Total: 12.27 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -1.51 Total: -2.02 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.03 Total: -34.22 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.84 Total: -32.62 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.02 -7.60 -36.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349456661.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.086 kcal (2) G-P(sol) polarization free energy of solvation -29.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds