Wall clock time and date at job start Tue Mar 31 2020 05:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00038 * 2 1 4 4 H 1.48493 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46934 * 299.99994 * 3 2 1 6 6 H 1.48497 * 109.47181 * 59.99938 * 3 2 1 7 7 C 1.37878 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00400 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99795 * 359.97438 * 7 2 1 10 10 O 1.42906 * 110.88507 * 62.42828 * 9 7 2 11 11 C 1.55153 * 111.00542 * 298.54700 * 9 7 2 12 12 C 1.54324 * 102.94059 * 206.38708 * 11 9 7 13 13 N 1.47018 * 107.40556 * 22.11177 * 12 11 9 14 14 C 1.34773 * 125.65281 * 181.10007 * 13 12 11 15 15 O 1.21277 * 120.00195 * 175.02122 * 14 13 12 16 16 C 1.50704 * 119.99886 * 355.02345 * 14 13 12 17 17 C 1.52998 * 109.47024 * 266.32487 * 16 14 13 18 18 C 1.53003 * 109.47083 * 180.02562 * 17 16 14 19 19 C 1.52996 * 109.47493 * 59.99192 * 18 17 16 20 20 O 1.42899 * 109.46957 * 60.00560 * 19 18 17 21 21 C 1.52993 * 109.47280 * 300.00443 * 19 18 17 22 22 C 1.52996 * 109.47318 * 146.31823 * 16 14 13 23 23 C 1.47755 * 108.52582 * 1.18482 * 13 12 11 24 24 H 0.97004 * 119.99901 * 359.97438 * 1 2 3 25 25 H 0.96700 * 114.00283 * 297.57146 * 10 9 7 26 26 H 1.08995 * 110.72227 * 88.02407 * 11 9 7 27 27 H 1.08998 * 110.87072 * 324.81967 * 11 9 7 28 28 H 1.09006 * 109.88140 * 141.61114 * 12 11 9 29 29 H 1.09004 * 109.88272 * 262.61410 * 12 11 9 30 30 H 1.09009 * 109.46854 * 26.31755 * 16 14 13 31 31 H 1.09000 * 109.46780 * 299.99064 * 17 16 14 32 32 H 1.08999 * 109.47662 * 59.99869 * 17 16 14 33 33 H 1.09009 * 109.46620 * 299.99160 * 18 17 16 34 34 H 1.08997 * 109.47232 * 179.97438 * 18 17 16 35 35 H 1.08996 * 109.47138 * 180.02562 * 19 18 17 36 36 H 0.96700 * 114.00759 * 59.99715 * 20 19 18 37 37 H 1.09005 * 109.47214 * 299.99672 * 21 19 18 38 38 H 1.08999 * 109.47327 * 179.97438 * 21 19 18 39 39 H 1.08993 * 109.47044 * 300.00369 * 22 16 14 40 40 H 1.09005 * 109.46729 * 60.00232 * 22 16 14 41 41 H 1.09001 * 110.28552 * 216.94301 * 23 13 12 42 42 H 1.09000 * 110.52487 * 94.67681 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.4607 -2.6311 -1.1838 11 6 0.3740 -2.6350 1.2721 12 6 0.2581 -4.1635 1.4504 13 7 1.3911 -4.7761 0.7417 14 6 1.6342 -6.0981 0.6435 15 8 2.5510 -6.4968 -0.0431 16 6 0.7668 -7.0810 1.3869 17 6 1.4066 -7.4053 2.7384 18 6 0.5263 -8.4036 3.4929 19 6 0.3913 -9.6872 2.6713 20 8 1.6849 -10.2567 2.4615 21 6 -0.2485 -9.3628 1.3199 22 6 0.6313 -8.3646 0.5656 23 6 2.2176 -3.6992 0.1582 24 1 -0.4850 0.8401 0.0004 25 1 -0.2253 -1.9558 -1.2759 26 1 -0.6080 -2.1897 1.1130 27 1 0.8662 -2.1825 2.1330 28 1 0.3021 -4.4176 2.5095 29 1 -0.6808 -4.5164 1.0235 30 1 -0.2199 -6.6461 1.5471 31 1 2.3932 -7.8401 2.5783 32 1 1.5031 -6.4908 3.3236 33 1 -0.4606 -7.9692 3.6530 34 1 0.9823 -8.6350 4.4555 35 1 -0.2362 -10.3982 3.2087 36 1 2.1502 -10.4877 3.2772 37 1 -1.2354 -8.9285 1.4800 38 1 -0.3443 -10.2772 0.7344 39 1 0.1755 -8.1335 -0.3971 40 1 1.6180 -8.7994 0.4055 41 1 2.6056 -4.0050 -0.8134 42 1 3.0370 -3.4404 0.8288 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349456662.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:53 Heat of formation + Delta-G solvation = -154.658775 kcal Electronic energy + Delta-G solvation = -23509.383025 eV Core-core repulsion = 20067.290646 eV Total energy + Delta-G solvation = -3442.092379 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.06970 -38.59043 -37.14443 -34.91669 -34.24608 -32.23161 -30.96143 -30.44099 -29.39686 -28.22057 -25.31516 -23.31998 -22.78753 -21.93955 -20.14490 -19.57058 -18.55555 -17.23248 -17.04269 -16.51868 -15.97634 -15.11214 -14.96319 -14.92003 -14.50052 -14.29579 -13.80805 -13.37614 -13.20975 -12.90552 -12.55342 -12.40944 -12.27721 -12.07534 -11.78197 -11.67874 -11.35349 -11.34910 -11.25428 -11.11142 -10.91966 -10.62030 -10.48455 -10.44415 -10.25227 -10.03000 -9.90500 -9.40567 -9.12877 -8.69348 -8.22121 -7.94082 -6.29681 -4.37535 3.12691 3.17898 3.27131 3.31706 3.58713 4.11785 4.26178 4.57232 4.61293 4.76767 4.96844 5.05446 5.11633 5.16739 5.29379 5.42347 5.44208 5.56859 5.64162 5.70084 5.76861 5.82391 5.87737 5.91414 6.02189 6.08219 6.15486 6.26656 6.32531 6.45521 6.52419 6.68032 6.89427 6.99359 7.28900 7.33791 7.52482 7.72306 8.01911 8.20265 8.65016 8.73058 9.29991 9.39096 10.77758 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.039482 B = 0.003788 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.014888 B = 7390.430019 C = 7449.833724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.902 3.098 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.534 4.534 8 H 0.065 0.935 9 C 0.247 3.753 10 O -0.582 6.582 11 C -0.136 4.136 12 C 0.100 3.900 13 N -0.608 5.608 14 C 0.528 3.472 15 O -0.553 6.553 16 C -0.100 4.100 17 C -0.101 4.101 18 C -0.149 4.149 19 C 0.104 3.896 20 O -0.560 6.560 21 C -0.111 4.111 22 C -0.099 4.099 23 C 0.119 3.881 24 H 0.267 0.733 25 H 0.380 0.620 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.373 0.627 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.512 -13.993 8.821 16.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.207 3.793 10 O -0.390 6.390 11 C -0.174 4.174 12 C -0.023 4.023 13 N -0.341 5.341 14 C 0.316 3.684 15 O -0.432 6.432 16 C -0.121 4.121 17 C -0.139 4.139 18 C -0.187 4.187 19 C 0.045 3.955 20 O -0.365 6.365 21 C -0.149 4.149 22 C -0.137 4.137 23 C -0.003 4.003 24 H 0.077 0.923 25 H 0.229 0.771 26 H 0.104 0.896 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.220 0.780 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.939 -14.579 7.727 16.760 hybrid contribution -0.006 1.529 0.861 1.755 sum -2.944 -13.050 8.588 15.898 Atomic orbital electron populations 1.69729 1.05964 1.27491 1.50283 1.24984 0.95011 0.99508 0.93470 0.86371 0.80209 0.82756 0.77701 1.19573 1.20769 1.20837 1.21494 0.93777 0.90194 1.51815 0.91685 1.19612 0.87041 0.90718 0.81932 1.86155 1.51477 1.56871 1.44532 1.23168 1.03158 0.89946 1.01159 1.22161 0.88700 0.96677 0.94776 1.48727 1.27395 1.05043 1.52900 1.20174 0.85091 0.81598 0.81568 1.90645 1.33024 1.78201 1.41339 1.21258 0.99250 0.95474 0.96112 1.21317 0.99820 0.98872 0.93872 1.22242 1.01094 0.96784 0.98566 1.21789 0.84589 0.92789 0.96305 1.86577 1.30857 1.83487 1.35615 1.21553 0.98415 0.99802 0.95097 1.21292 1.01766 0.93176 0.97449 1.22414 0.93776 0.86139 0.97957 0.92311 0.77067 0.89568 0.91402 0.93037 0.92548 0.89762 0.90604 0.91684 0.90831 0.91510 0.92966 0.78013 0.90685 0.91103 0.91876 0.89804 0.91194 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.83 10.76 55.43 0.60 -22.24 16 2 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 3 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.53 -13.92 8.27 -34.44 -0.28 -14.20 16 8 H 0.06 1.70 7.79 -52.49 -0.41 1.29 16 9 C 0.25 5.98 0.87 -89.63 -0.08 5.90 16 10 O -0.58 -14.89 13.16 -35.23 -0.46 -15.35 16 11 C -0.14 -2.89 5.38 -24.90 -0.13 -3.02 16 12 C 0.10 1.80 6.00 -3.07 -0.02 1.78 16 13 N -0.61 -12.27 3.34 -170.25 -0.57 -12.84 16 14 C 0.53 10.27 6.86 -10.99 -0.08 10.19 16 15 O -0.55 -12.70 16.50 5.56 0.09 -12.61 16 16 C -0.10 -1.44 2.21 -91.77 -0.20 -1.65 16 17 C -0.10 -1.24 5.04 -26.73 -0.13 -1.38 16 18 C -0.15 -1.35 5.64 -26.73 -0.15 -1.50 16 19 C 0.10 0.97 3.77 -26.74 -0.10 0.87 16 20 O -0.56 -5.84 11.97 -35.23 -0.42 -6.26 16 21 C -0.11 -1.16 5.66 -26.76 -0.15 -1.31 16 22 C -0.10 -1.37 4.70 -26.76 -0.13 -1.50 16 23 C 0.12 2.71 6.13 -2.35 -0.01 2.69 16 24 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 25 H 0.38 9.61 7.56 45.56 0.34 9.96 16 26 H 0.09 1.91 7.55 -51.93 -0.39 1.52 16 27 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.96 7.91 -51.93 -0.41 0.55 16 30 H 0.08 1.12 6.97 -51.92 -0.36 0.76 16 31 H 0.08 1.04 7.68 -51.93 -0.40 0.65 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.37 2.35 9.08 45.56 0.41 2.76 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.08 1.36 7.39 -51.93 -0.38 0.97 16 41 H 0.07 1.71 8.00 -51.93 -0.42 1.30 16 42 H 0.07 1.56 8.03 -51.93 -0.42 1.14 16 LS Contribution 331.84 15.07 5.00 5.00 Total: -1.00 -30.14 331.84 -7.72 -37.85 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -5.36 Total: 12.73 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -1.57 Total: -1.36 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.03 Total: -35.08 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -0.79 Total: -34.22 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.14 -7.72 -37.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349456662.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.806 kcal (2) G-P(sol) polarization free energy of solvation -30.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds