Wall clock time and date at job start Tue Mar 31 2020 05:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.48192 * 2 1 4 4 C 1.53104 * 109.40738 * 240.00492 * 2 1 3 5 5 C 1.53178 * 109.15510 * 297.49714 * 4 2 1 6 6 H 1.08999 * 109.54867 * 63.06830 * 5 4 2 7 7 C 1.50704 * 109.53838 * 183.23908 * 5 4 2 8 8 O 1.21283 * 120.00051 * 33.54391 * 7 5 4 9 9 N 1.34785 * 119.99970 * 213.53608 * 7 5 4 10 10 C 1.47574 * 134.48952 * 355.00047 * 9 7 5 11 11 C 1.53945 * 86.11586 * 155.35696 * 10 9 7 12 12 O 1.42901 * 113.73860 * 269.15225 * 11 10 9 13 13 C 1.50694 * 113.74629 * 137.95455 * 11 10 9 14 14 H 1.08005 * 119.99975 * 1.92001 * 13 11 10 15 15 C 1.37874 * 120.00479 * 181.92698 * 13 11 10 16 16 N 1.31520 * 120.00614 * 179.97438 * 15 13 11 17 17 Si 1.86799 * 119.99819 * 359.97438 * 15 13 11 18 18 H 1.48504 * 109.47350 * 270.00370 * 17 15 13 19 19 H 1.48497 * 109.47030 * 30.00395 * 17 15 13 20 20 H 1.48500 * 109.47366 * 150.00093 * 17 15 13 21 21 C 1.47807 * 134.45707 * 174.86257 * 9 7 5 22 22 C 1.53177 * 109.11260 * 303.14895 * 5 4 2 23 23 C 1.53093 * 109.16137 * 56.93850 * 22 5 4 24 24 O 1.42904 * 109.47705 * 120.02335 * 2 1 3 25 25 H 1.08999 * 109.47638 * 299.98201 * 1 2 3 26 26 H 1.09003 * 109.47043 * 59.98182 * 1 2 3 27 27 H 1.09000 * 109.47471 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46782 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46693 * 300.01895 * 3 2 1 30 30 H 1.09000 * 109.46724 * 60.02357 * 3 2 1 31 31 H 1.09000 * 109.45210 * 177.63829 * 4 2 1 32 32 H 1.09003 * 109.59362 * 57.44198 * 4 2 1 33 33 H 1.08996 * 113.77365 * 41.05630 * 10 9 7 34 34 H 1.09000 * 113.87430 * 269.66480 * 10 9 7 35 35 H 0.96709 * 114.00066 * 178.07303 * 12 11 10 36 36 H 0.96994 * 120.00191 * 179.97438 * 16 15 13 37 37 H 1.08997 * 113.77235 * 90.37886 * 21 9 7 38 38 H 1.09002 * 113.83533 * 318.91944 * 21 9 7 39 39 H 1.08994 * 109.52201 * 176.84628 * 22 5 4 40 40 H 1.08998 * 109.52118 * 297.03842 * 22 5 4 41 41 H 1.08999 * 109.47893 * 62.37084 * 23 22 5 42 42 H 1.08990 * 109.48240 * 182.39938 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0388 -0.7219 -1.2506 5 6 1.5757 -2.1815 -1.2118 6 1 0.4867 -2.2195 -1.2413 7 6 2.1381 -2.9205 -2.3987 8 8 3.2310 -2.6259 -2.8342 9 7 1.4266 -3.9089 -2.9761 10 6 0.1481 -4.5785 -2.6684 11 6 0.0818 -4.9121 -4.1699 12 8 -0.5992 -3.9263 -4.9486 13 6 -0.3853 -6.3152 -4.4598 14 1 -0.6658 -6.9696 -3.6476 15 6 -0.4544 -6.7637 -5.7617 16 7 -0.8616 -7.9884 -6.0147 17 14 0.0303 -5.6317 -7.1664 18 1 -1.1618 -4.8746 -7.6260 19 1 1.0708 -4.6808 -6.6993 20 1 0.5671 -6.4398 -8.2907 21 6 1.6132 -4.7554 -4.1734 22 6 2.0763 -2.8323 0.0813 23 6 1.5644 -2.0284 1.2794 24 8 2.0065 -0.6741 1.1665 25 1 -0.3634 0.5135 0.8901 26 1 -0.3633 0.5141 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1303 1.4421 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6774 1.9561 0.8902 31 1 3.1279 -0.6858 -1.2728 32 1 1.6390 -0.2365 -2.1410 33 1 -0.6352 -3.8980 -2.3346 34 1 0.2517 -5.4545 -2.0281 35 1 -0.6175 -4.1174 -5.8965 36 1 -0.9105 -8.3037 -6.9306 37 1 2.1502 -5.6831 -3.9762 38 1 1.9976 -4.2156 -5.0389 39 1 1.7035 -3.8547 0.1425 40 1 3.1663 -2.8400 0.0868 41 1 0.4749 -2.0548 1.2960 42 1 1.9527 -2.4621 2.2008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353643612.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:02 Heat of formation + Delta-G solvation = -92.807946 kcal Electronic energy + Delta-G solvation = -23672.049447 eV Core-core repulsion = 20232.639121 eV Total energy + Delta-G solvation = -3439.410326 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.54506 -39.39241 -37.59186 -34.49954 -33.76792 -33.51508 -32.58055 -29.10954 -28.31322 -27.48074 -25.89323 -25.64607 -24.03199 -22.42883 -20.23748 -19.30004 -18.55943 -17.49864 -16.81323 -16.37392 -16.22441 -16.04534 -15.09217 -14.92038 -14.75373 -14.36823 -13.78574 -13.67509 -13.45078 -13.21578 -12.95350 -12.66408 -12.56619 -12.33481 -12.25685 -12.16633 -12.01393 -11.81854 -11.43600 -11.21492 -11.09684 -10.96748 -10.76964 -10.65049 -10.26317 -10.15651 -9.89106 -9.60660 -9.20469 -8.96744 -8.70326 -8.07352 -6.45661 -4.52321 2.97381 3.00153 3.05079 3.14087 3.32821 3.63954 4.01631 4.53912 4.56868 4.63229 4.71739 4.73012 4.90029 5.04929 5.08898 5.25255 5.29440 5.31718 5.44399 5.51729 5.56724 5.57121 5.62471 5.72380 5.83444 5.85540 5.93674 5.97661 6.03363 6.07483 6.08987 6.14758 6.29101 6.32539 6.48988 6.58050 7.15822 7.16699 7.98227 8.25717 8.46333 8.56303 8.59798 9.12139 10.66358 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.031598 B = 0.004307 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.907718 B = 6498.780748 C = 6636.297982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.112 3.888 3 C -0.136 4.136 4 C -0.124 4.124 5 C -0.103 4.103 6 H 0.090 0.910 7 C 0.535 3.465 8 O -0.558 6.558 9 N -0.634 5.634 10 C 0.119 3.881 11 C 0.195 3.805 12 O -0.555 6.555 13 C -0.538 4.538 14 H 0.091 0.909 15 C 0.082 3.918 16 N -0.876 5.876 17 Si 0.854 3.146 18 H -0.266 1.266 19 H -0.254 1.254 20 H -0.282 1.282 21 C 0.071 3.929 22 C -0.142 4.142 23 C 0.063 3.937 24 O -0.374 6.374 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.354 0.646 36 H 0.271 0.729 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.055 0.945 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.849 12.515 11.200 16.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.073 3.927 3 C -0.193 4.193 4 C -0.162 4.162 5 C -0.124 4.124 6 H 0.108 0.892 7 C 0.324 3.676 8 O -0.438 6.438 9 N -0.367 5.367 10 C -0.003 4.003 11 C 0.154 3.846 12 O -0.366 6.366 13 C -0.576 4.576 14 H 0.109 0.891 15 C -0.124 4.124 16 N -0.511 5.511 17 Si 0.682 3.318 18 H -0.193 1.193 19 H -0.179 1.179 20 H -0.208 1.208 21 C -0.051 4.051 22 C -0.181 4.181 23 C -0.014 4.014 24 O -0.293 6.293 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.206 0.794 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.535 13.031 11.618 17.641 hybrid contribution 0.079 -0.142 -1.683 1.691 sum 2.614 12.888 9.934 16.481 Atomic orbital electron populations 1.22481 0.95685 1.02879 1.02814 1.21496 0.93113 0.92835 0.85267 1.21738 1.02067 0.93158 1.02379 1.22052 1.02998 0.93206 0.97943 1.21285 1.01635 0.95784 0.93719 0.89151 1.20111 0.84091 0.79829 0.83544 1.90637 1.20505 1.67636 1.64991 1.50241 1.23844 1.33801 1.28864 1.23353 0.83551 0.95421 0.97995 1.20548 0.87227 0.88152 0.88637 1.86419 1.78839 1.50320 1.21056 1.21212 1.46363 0.95235 0.94778 0.89076 1.24982 0.93651 0.95039 0.98681 1.69849 1.44362 1.15945 1.20964 0.87394 0.79974 0.81320 0.83081 1.19274 1.17909 1.20835 1.24597 1.01432 0.92735 0.86343 1.22111 1.02668 0.99834 0.93450 1.22557 0.98871 0.82117 0.97872 1.87948 1.73836 1.24494 1.43056 0.91808 0.91296 0.91743 0.91725 0.91062 0.91837 0.89792 0.90726 0.90696 0.88567 0.79412 0.91847 0.89032 0.91374 0.90344 0.90358 0.92633 0.88611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 7.93 37.16 0.29 -1.51 16 2 C 0.11 1.27 1.11 -90.56 -0.10 1.17 16 3 C -0.14 -1.31 8.85 37.16 0.33 -0.99 16 4 C -0.12 -1.68 3.91 -26.59 -0.10 -1.79 16 5 C -0.10 -1.49 2.14 -91.59 -0.20 -1.69 16 6 H 0.09 1.23 6.03 -51.93 -0.31 0.91 16 7 C 0.54 10.20 7.08 -10.98 -0.08 10.12 16 8 O -0.56 -12.45 16.92 5.56 0.09 -12.36 16 9 N -0.63 -12.49 3.61 -178.14 -0.64 -13.14 16 10 C 0.12 2.21 7.83 -2.97 -0.02 2.18 16 11 C 0.20 4.34 1.06 -90.85 -0.10 4.25 16 12 O -0.56 -12.76 13.35 -35.23 -0.47 -13.23 16 13 C -0.54 -13.62 9.19 -34.44 -0.32 -13.94 16 14 H 0.09 2.44 8.06 -52.48 -0.42 2.01 16 15 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 16 N -0.88 -24.33 13.96 55.43 0.77 -23.56 16 17 Si 0.85 19.02 24.31 -169.99 -4.13 14.89 16 18 H -0.27 -5.72 7.05 56.52 0.40 -5.32 16 19 H -0.25 -5.48 5.16 56.52 0.29 -5.19 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 C 0.07 1.53 7.32 -2.84 -0.02 1.51 16 22 C -0.14 -1.78 5.41 -26.59 -0.14 -1.92 16 23 C 0.06 0.66 6.52 37.21 0.24 0.91 16 24 O -0.37 -4.61 10.24 -35.23 -0.36 -4.98 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.65 4.98 -51.93 -0.26 0.39 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 1.27 7.76 -51.93 -0.40 0.87 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.25 7.82 -51.93 -0.41 0.85 16 34 H 0.10 1.62 8.09 -51.93 -0.42 1.20 16 35 H 0.35 7.89 3.57 45.56 0.16 8.05 16 36 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.09 1.92 8.09 -51.93 -0.42 1.50 16 38 H 0.07 1.52 6.83 -51.93 -0.35 1.16 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.06 0.53 6.34 -51.93 -0.33 0.20 16 42 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 324.67 15.07 4.89 4.89 Total: -1.00 -30.24 324.67 -6.37 -36.62 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -6.22 Total: 10.50 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -0.31 Total: 0.35 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.13 Total: -36.70 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.74 Total: -30.56 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.13 Total: 14.89 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.24 -6.37 -36.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353643612.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.189 kcal (2) G-P(sol) polarization free energy of solvation -30.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds