Wall clock time and date at job start Tue Mar 31 2020 05:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.48303 * 2 1 4 4 C 1.53106 * 109.47918 * 240.05415 * 2 1 3 5 5 C 1.53182 * 109.15360 * 182.50219 * 4 2 1 6 6 H 1.08996 * 109.53957 * 296.93498 * 5 4 2 7 7 C 1.50698 * 109.53917 * 176.75953 * 5 4 2 8 8 O 1.21280 * 120.00247 * 274.74702 * 7 5 4 9 9 N 1.34777 * 119.99857 * 94.75328 * 7 5 4 10 10 C 1.47586 * 134.49243 * 174.90728 * 9 7 5 11 11 C 1.53942 * 86.11393 * 204.63428 * 10 9 7 12 12 O 1.42898 * 113.74145 * 90.73916 * 11 10 9 13 13 C 1.50700 * 113.73776 * 221.93700 * 11 10 9 14 14 H 1.08001 * 120.00119 * 358.07540 * 13 11 10 15 15 C 1.37887 * 119.99726 * 178.07725 * 13 11 10 16 16 N 1.31510 * 120.00186 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99548 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47255 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46872 * 120.00014 * 17 15 13 20 20 H 1.48496 * 109.46867 * 239.99602 * 17 15 13 21 21 C 1.47578 * 134.49471 * 354.89768 * 9 7 5 22 22 C 1.53171 * 109.11017 * 56.84655 * 5 4 2 23 23 C 1.53091 * 109.16614 * 303.06183 * 22 5 4 24 24 O 1.42904 * 109.47814 * 120.02573 * 2 1 3 25 25 H 1.09003 * 109.47195 * 299.98188 * 1 2 3 26 26 H 1.09003 * 109.47041 * 59.96910 * 1 2 3 27 27 H 1.08996 * 109.47468 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47130 * 180.02562 * 3 2 1 29 29 H 1.08991 * 109.47342 * 300.02218 * 3 2 1 30 30 H 1.09004 * 109.47188 * 60.02701 * 3 2 1 31 31 H 1.08996 * 109.59691 * 62.55330 * 4 2 1 32 32 H 1.09001 * 109.45121 * 302.35799 * 4 2 1 33 33 H 1.08994 * 113.77118 * 90.32675 * 10 9 7 34 34 H 1.09000 * 113.76213 * 318.93180 * 10 9 7 35 35 H 0.96711 * 114.00082 * 179.97438 * 12 11 10 36 36 H 0.96997 * 119.99829 * 180.02562 * 16 15 13 37 37 H 1.08998 * 113.77120 * 41.06275 * 21 9 7 38 38 H 1.09002 * 113.77014 * 269.66764 * 21 9 7 39 39 H 1.08997 * 109.52493 * 62.97047 * 22 5 4 40 40 H 1.09004 * 109.52091 * 183.09509 * 22 5 4 41 41 H 1.08998 * 109.48133 * 177.58886 * 23 22 5 42 42 H 1.08994 * 109.48094 * 297.61950 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4423 0.0000 4 6 2.0406 -0.7205 -1.2507 5 6 3.5711 -0.7712 -1.2121 6 1 3.9702 0.2427 -1.2415 7 6 4.0798 -1.5480 -2.3989 8 8 4.1595 -2.7569 -2.3435 9 7 4.4465 -0.8993 -3.5220 10 6 5.0592 -1.3098 -4.8003 11 6 5.5610 0.1417 -4.9055 12 8 6.8516 0.3476 -4.3275 13 6 5.4362 0.7281 -6.2881 14 1 5.0534 0.1248 -7.0980 15 6 5.8109 2.0348 -6.5192 16 7 6.2767 2.7695 -5.5329 17 14 5.6569 2.7613 -8.2332 18 1 5.1096 1.7364 -9.1580 19 1 4.7429 3.9312 -8.1946 20 1 6.9952 3.1943 -8.7093 21 6 4.3963 0.5068 -3.9674 22 6 4.0175 -1.4602 0.0810 23 6 3.4307 -0.7093 1.2791 24 8 2.0065 -0.6741 1.1665 25 1 -0.3634 0.5136 0.8902 26 1 -0.3633 0.5143 -0.8897 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1303 1.4421 -0.0005 29 1 1.6768 1.9564 -0.8897 30 1 1.6775 1.9561 0.8903 31 1 1.7163 -0.1818 -2.1410 32 1 1.6430 -1.7352 -1.2728 33 1 4.3344 -1.5809 -5.5679 34 1 5.8574 -2.0437 -4.6891 35 1 7.1707 1.2582 -4.3918 36 1 6.5399 3.6888 -5.6954 37 1 4.6653 1.2233 -3.1914 38 1 3.4768 0.7695 -4.4904 39 1 3.6611 -2.4903 0.0867 40 1 5.1058 -1.4510 0.1417 41 1 3.7099 -1.2203 2.2006 42 1 3.8194 0.3088 1.2959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353643616.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:05 Heat of formation + Delta-G solvation = -109.836046 kcal Electronic energy + Delta-G solvation = -23713.886108 eV Core-core repulsion = 20273.737388 eV Total energy + Delta-G solvation = -3440.148720 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.40969 -39.12374 -37.31791 -33.99087 -33.72383 -33.29448 -32.25726 -29.05836 -28.00542 -27.37737 -25.63456 -25.28481 -24.22878 -22.23743 -20.02838 -19.14221 -18.24089 -17.43610 -16.51053 -16.23971 -16.05517 -15.30760 -15.02680 -14.73683 -14.54761 -14.19428 -14.07794 -13.56293 -13.12303 -12.92748 -12.57452 -12.50254 -12.33811 -12.17511 -12.04805 -11.84961 -11.70705 -11.63270 -11.26331 -11.13564 -11.09108 -11.03033 -10.65420 -10.54247 -10.32274 -10.17503 -9.74100 -9.47127 -9.06464 -8.79733 -8.42262 -7.86233 -6.43264 -4.53638 3.10635 3.15387 3.20606 3.24416 3.51351 3.72929 4.15519 4.66075 4.69881 4.79622 4.80206 4.87940 5.01087 5.24454 5.33205 5.37710 5.41580 5.52160 5.57603 5.59838 5.69099 5.72439 5.81445 5.89512 5.94114 5.98812 6.04614 6.14771 6.17282 6.20353 6.34321 6.39174 6.48280 6.60409 6.67386 7.07010 7.25138 7.59194 7.77899 8.47697 8.50344 8.75975 9.17903 9.38498 10.63335 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.022945 B = 0.004586 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.014246 B = 6104.125082 C = 6584.646142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.114 3.886 3 C -0.181 4.181 4 C -0.127 4.127 5 C -0.102 4.102 6 H 0.090 0.910 7 C 0.534 3.466 8 O -0.565 6.565 9 N -0.631 5.631 10 C 0.110 3.890 11 C 0.239 3.761 12 O -0.573 6.573 13 C -0.537 4.537 14 H 0.072 0.928 15 C 0.072 3.928 16 N -0.898 5.898 17 Si 0.907 3.093 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.280 1.280 21 C 0.080 3.920 22 C -0.138 4.138 23 C 0.061 3.939 24 O -0.375 6.375 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.842 0.029 9.422 12.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.075 3.925 3 C -0.239 4.239 4 C -0.165 4.165 5 C -0.123 4.123 6 H 0.108 0.892 7 C 0.323 3.677 8 O -0.445 6.445 9 N -0.364 5.364 10 C -0.012 4.012 11 C 0.197 3.803 12 O -0.385 6.385 13 C -0.575 4.575 14 H 0.090 0.910 15 C -0.130 4.130 16 N -0.538 5.538 17 Si 0.734 3.266 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.206 1.206 21 C -0.043 4.043 22 C -0.176 4.176 23 C -0.016 4.016 24 O -0.294 6.294 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.247 0.753 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.955 -1.224 9.922 12.776 hybrid contribution 0.220 1.296 -1.227 1.798 sum -7.735 0.072 8.696 11.638 Atomic orbital electron populations 1.21745 0.92310 1.02844 1.02459 1.21453 0.94743 0.91176 0.85159 1.22475 1.02301 0.96228 1.02866 1.22093 0.93593 1.02298 0.98542 1.21247 0.96724 1.00548 0.93782 0.89199 1.20078 0.77032 0.87318 0.83281 1.90617 1.56320 1.14291 1.83296 1.50231 1.59852 1.12208 1.14149 1.23457 0.95337 0.99525 0.82856 1.19848 0.81031 0.89057 0.90371 1.86060 1.33806 1.36684 1.81917 1.21549 1.44015 0.97294 0.94639 0.91003 1.25070 0.93424 0.96597 0.97938 1.69406 1.43255 1.09558 1.31615 0.86297 0.78060 0.79001 0.83285 1.19426 1.20676 1.20612 1.24266 1.01813 0.80997 0.97243 1.22051 1.01404 1.01138 0.93028 1.22586 0.81163 0.99674 0.98130 1.87936 1.20997 1.77485 1.42987 0.91813 0.91009 0.91811 0.91687 0.91158 0.91832 0.90499 0.90484 0.89747 0.91244 0.75347 0.91736 0.91462 0.90082 0.89858 0.90676 0.88729 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.85 37.16 0.33 -1.06 16 2 C 0.11 1.39 1.11 -90.57 -0.10 1.29 16 3 C -0.18 -2.02 7.93 37.15 0.29 -1.73 16 4 C -0.13 -1.79 4.19 -26.58 -0.11 -1.90 16 5 C -0.10 -1.63 2.15 -91.59 -0.20 -1.82 16 6 H 0.09 1.41 6.00 -51.93 -0.31 1.10 16 7 C 0.53 10.84 7.07 -10.99 -0.08 10.76 16 8 O -0.56 -13.10 16.94 5.56 0.09 -13.00 16 9 N -0.63 -13.28 3.61 -178.34 -0.64 -13.92 16 10 C 0.11 2.41 8.23 -2.97 -0.02 2.38 16 11 C 0.24 5.62 1.41 -90.85 -0.13 5.49 16 12 O -0.57 -14.47 13.50 -35.23 -0.48 -14.94 16 13 C -0.54 -13.22 8.62 -34.44 -0.30 -13.51 16 14 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 15 C 0.07 1.76 5.39 -17.82 -0.10 1.66 16 16 N -0.90 -22.20 11.19 55.43 0.62 -21.58 16 17 Si 0.91 19.09 29.54 -169.99 -5.02 14.07 16 18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 21 C 0.08 1.67 7.82 -2.98 -0.02 1.64 16 22 C -0.14 -2.00 5.13 -26.60 -0.14 -2.14 16 23 C 0.06 0.74 6.52 37.20 0.24 0.98 16 24 O -0.37 -5.00 10.24 -35.23 -0.36 -5.36 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.76 4.98 -51.93 -0.26 0.50 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.08 1.70 8.09 -51.93 -0.42 1.28 16 34 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.39 9.95 6.56 45.56 0.30 10.25 16 36 H 0.27 6.39 8.31 -40.82 -0.34 6.06 16 37 H 0.07 1.39 7.81 -51.93 -0.41 0.99 16 38 H 0.08 1.63 8.09 -51.93 -0.42 1.21 16 39 H 0.08 1.32 7.76 -51.93 -0.40 0.92 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.05 0.60 6.34 -51.93 -0.33 0.27 16 LS Contribution 333.92 15.07 5.03 5.03 Total: -1.00 -28.09 333.92 -7.10 -35.19 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -6.02 Total: 12.46 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -0.33 Total: 2.04 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: -0.02 Total: -35.49 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -0.74 Total: -33.31 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.09 -7.10 -35.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353643616.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.641 kcal (2) G-P(sol) polarization free energy of solvation -28.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds